BAC Information

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BAC

Clone NameB6Ng01-141D08
Chromosome3 (Build37)3 (Build37)
Map Location 41,059,354 - 41,059,737106,220,632 - 106,221,206
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141D08.bB6Ng01-141D08.g
ACCDH939722DH939723
length879912
definitionDH939722|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D08, 5' end.DH939723|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,354 - 41,059,737)(106,220,632 - 106,221,206)
sequence
gaattctttgtttagctctgagccacattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatccttttccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgccttacagaagctttacagtttca
tgaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcgagacttttccccac
tttctcctctataagtttctgtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataggaatgcagatgctggc
gaggatgtggagaaagaggaacactccttcattgttggtgggattgcaag
cttgtacaaccactctggaaatcagtctggtggttcctcaaaaaattgga
catactactactggaggatcccgcaatacctctcctgggcatatatccag
aagatgtcccaactggtaagaagtacacatgctccactatgttcatagca
gccttatttataatagccaaaagctggaaagaacccagatgcccctcaac
agaggaatggatacaaaaatgtgttacatttacacaatgtactcagctac
taaaaagaatgaatttatgaaatttctaggcaaatggatggacctggagg
gcatcatcctgagtgaggtaacagaatcacaaagaactcaatgatatgta
ctcattgataagtggatatagcccagaaacttagtatacccgagatatag
atacacttgcaaaacacatgaaaatgaga
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattgcattgatggattttcgtttattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcattattcataagagaaattggtctgagttctctatctttgttggatc
tttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttgg
gtagagtaccttctacttctatcttgtgaaaaagtttgtgcagaactgga
attagatcttatttgaaggtctgatagaactcggcactaaacccatctgg
tcctgggctttttttttggctgggagactttttataactgcttctatttc
tttaggggatatgggactgtttagaaggtcaacttgatcctgattcaact
ttggtacctggtatctgtccagaaatttgtccatttcgtccagattttcc
agttttgttgagtatagccttttgtagaaggatctgatggtgttttggat
ttcttcaggatctgttgttatgtctcccttttcagttctgattttgttaa
ttaggattttgtctctgtgccctctagtgagtctagctaagggttatcta
tcttgttgattttctcaaagaaccaactcctcctttggttattcttgaat
agtcttgtttcacttggtgatttcacccctgagtttgattatttcctgcc
gtctactctctgggtgaattgcttcctttttctaggctttagatgtgttg
tcaagctgctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059354_41059737
seq2: B6Ng01-141D08.b_48_432 (reverse)

seq1  TCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCAC  50
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  TCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCAC  50

seq1  ATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCT  100
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  ATAAAACCAGAGACACAGAAACTTATAGAGGAGAAAGTGGGGAAAAGTCT  100

seq1  TGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTT  150
       |||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  CGAAGATATGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTT  150

seq1  GTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGC  200
      ||||||||||||  ||||| |||||||||||||||||||||||| |||||
seq2  GTGCTGTAAGATCAAGAATTGACAAATGGGACCTCATGAAACTGTAAAGC  200

seq1  TTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGA  249
      ||||| |||||||||||||| |||||||||||||||||| ||||||||||
seq2  TTCTGTAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCACCAACAGA  250

seq1  TTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCA  299
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCA  300

seq1  ATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCC  349
      |||||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  ATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCC  350

seq1  ATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  384
      ||||||||||| |||||||||||||||||||||||
seq2  ATTAAAAAATGTGGCTCAGAGCTAAACAAAGAATT  385

seq1: chr3_106220632_106221206
seq2: B6Ng01-141D08.g_69_644 (reverse)

seq1  ATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACC  50

seq1  TTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATAAATAGT  100
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATAAAAAGT  100

seq1  CTCCCAGCC--AAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTC  148
      |||||||||  |||||||||||||||||||| ||||||||||| ||||||
seq2  CTCCCAGCCAAAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCCGAGTTC  150

seq1  TATCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTTTTTCA  198
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATCAGACCTTCAAATAAGATCTAATTCCAGTTCTGCACAAACTTTTTCA  200

seq1  CAAGATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTA  250

seq1  TTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGGGAACTTC  298
      |||||||||||||||||||||||||||||||||||||||||| |||| ||
seq2  TTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAAC-TC  299

seq1  AGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCT  348
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  AGACCAATTTCTCTTATGAATAATGATGCAAAAATCCTCAATAAAATTCT  349

seq1  CGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAG  399

seq1  TAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATC  448
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATAAACGAAAATCCATC  449

seq1  AATGTAATCAACTATATAAACAAACTCAAAGACAAAAACCACATGATCAT  498
      |||| |||| | ||||||||||||||||||||||||||||||||||||||
seq2  AATGCAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCAT  499

seq1  CTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA  549

seq1  TAAAAGTTCTGGAAAGATCAGGAATTC  575
      |||||||||||||||||||||||||||
seq2  TAAAAGTTCTGGAAAGATCAGGAATTC  576