BAC Information

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BAC

Clone NameB6Ng01-141D23
Chromosome3 (Build37)
Map Location 13,811,352 - 13,956,955
singlet/doubletdoublet
Overlap gene0710005M24Rik
Upstream geneEG668033, LOC668037, LOC100039823, LOC100039861, LOC100041679, LOC100041667, LOC100039882
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141D23.bB6Ng01-141D23.g
ACCDH939752DH939753
length1,001943
definitionDH939752|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D23, 5' end.DH939753|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,811,352 - 13,811,931)(13,956,291 - 13,956,955)
sequence
gaattcctttacctacaggctaagagcagcagaagtttgttttttgtttg
tttgtttgtttgtttcagttttacaaatactcttttttattggatatttt
atgtatttacatttcaaatgttatcccctttccaggtttcccctccagag
ccctttctcccattccctctacccttgcatctaagaggatgctccccctc
ccacccccctactcctacctccccaccctggcattcccctatactgggcc
atcaaatcttcacaggaccaaggacttctcctcctattgatgccagtcaa
tgccatcctctgctacatatgcagctggagccatgggtccctccatgtgt
actccttggttgacagcatagttcctgggagctctggggagtattgttgg
ttaatactgttgttctttctagggagttgtaaactccttcagctcctcca
gtcctttctcttactcttcctttggggaccctatggtaagttggcttcta
gcatctgcctctgtatttgtctgggtctggcaaagcctctcagatgacag
ctataacaggctactgtcagcaagcatttcttggcctccacaatagtgtt
tgggtttggtgactgtgtatgggatgaatccccaggtggggcagtctctg
gatggtcttttcttcacagtctctgctccacactttgtcctggtatttcc
tttagacaggagcccttctgggttaagaatttggagatgagtgggtggcc
ccatccccctacctatggtcttgcctaactgctggatattgtctctacag
gttctcccctccaatgtcatccctgttggggcctgagagcctcttgtttt
tctggcatctgggacttgctggtggctactcccagttacccatcccccat
tgctgcacacctctattcaaattcctgaccctctgtttatcttccctatt
ctcctcttataactgctccctttttccctcttccccttctctactttctc
c
gaattctacatctatgtccacaggctggaggaaaagagagccacagggcc
tggcttcagcttttgaaacccaaagccaacccctagcaacaaacttcctt
caataatgctgctacttctctaaccagatcataccttctaatagtgaggg
gatttttcattcaaaacaatattacatataactttaaacctatggacacc
aggtattggaatgtggcagtttgagtaggaatggcccctataggctcata
tgtctgaatgcttgattattagggagaggtgacacccgacagatattagg
aggtgttactttcttggagtgggtgtagccctattggagaaagtgtgtca
ccactgagggtggcctttggtgtttcaaaagatgaaggcaggcccagtag
ctatctcttcttgatgtctggaaatcaggatgtaaaattctcaactacat
gcctggatgctactgtgcttcctgacatgagcataatagactatatccta
gaaactacaaaaaatacccaagtaaaggcttttttaaaataagagttgcc
ataatcatggtatctcttacagcaatagaacactaagacacaaaggataa
cacgcatgtaaccataaaattttgcttcttgtcaattctcatctttcttc
tgaatgatcatcttttcttataaacttaccagagtacttttgcgcatgga
agcattgtcattgaattctgatttatgtatttttgatatatgagaatggt
aggatgtgccattgcatcatgcaaggctttgacatgtgtatacactgtga
gttgattattggggcaagtgatatgcttattccacacacatttgtcatat
cctttgttgtaagaacatttcacaatctactcagattttttcaagcaata
taataataactgtagtcattatgttttatagtagaccttaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13811352_13811931
seq2: B6Ng01-141D23.b_47_626

seq1  GAATTCCTTTACCTACAGGCTAAGAGCAGCAGAAGTTTGTTTTTTGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTACCTACAGGCTAAGAGCAGCAGAAGTTTGTTTTTTGTTTG  50

seq1  TTTGTTTGTTTGTTTCAGTTTTACAAATACTCTTTTTTATTGGATATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTCAGTTTTACAAATACTCTTTTTTATTGGATATTTT  100

seq1  ATGTATTTACATTTCAAATGTTATCCCCTTTCCAGGTTTCCCCTCCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTACATTTCAAATGTTATCCCCTTTCCAGGTTTCCCCTCCAGAG  150

seq1  CCCTTTCTCCCATTCCCTCTACCCTTGCATCTAAGAGGATGCTCCCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTCCCATTCCCTCTACCCTTGCATCTAAGAGGATGCTCCCCCTC  200

seq1  CCACCCCCCTACTCCTACCTCCCCACCCTGGCATTCCCCTATACTGGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCCTACTCCTACCTCCCCACCCTGGCATTCCCCTATACTGGGCC  250

seq1  ATCAAATCTTCACAGGACCAAGGACTTCTCCTCCTATTGATGCCAGTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCTTCACAGGACCAAGGACTTCTCCTCCTATTGATGCCAGTCAA  300

seq1  TGCCATCCTCTGCTACATATGCAGCTGGAGCCATGGGTCCCTCCATGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCCTCTGCTACATATGCAGCTGGAGCCATGGGTCCCTCCATGTGT  350

seq1  ACTCCTTGGTTGACAGCATAGTTCCTGGGAGCTCTGGGGAGTATTGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTGGTTGACAGCATAGTTCCTGGGAGCTCTGGGGAGTATTGTTGG  400

seq1  TTAATACTGTTGTTCTTTCTAGGGAGTTGTAAACTCCTTCAGCTCCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACTGTTGTTCTTTCTAGGGAGTTGTAAACTCCTTCAGCTCCTCCA  450

seq1  GTCCTTTCTCTTACTCTTCCTTTGGGGACCCTATGGTAAGTTGGCTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTCTCTTACTCTTCCTTTGGGGACCCTATGGTAAGTTGGCTTCTA  500

seq1  GCATCTGCCTCTGTATTTGTCTGGGTCTGGCAAAGCCTCTCAGATGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGCCTCTGTATTTGTCTGGGTCTGGCAAAGCCTCTCAGATGACAG  550

seq1  CTATAACAGGCTACTGTCAGCAAGCATTTC  580
      ||||||||||||||||||||||||||||||
seq2  CTATAACAGGCTACTGTCAGCAAGCATTTC  580

seq1: chr3_13956291_13956955
seq2: B6Ng01-141D23.g_66_730 (reverse)

seq1  AAAGATGATCATTCAGAAGAAAGATGAGAATTGACAAGAAGCAAAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGATCATTCAGAAGAAAGATGAGAATTGACAAGAAGCAAAATTTT  50

seq1  ATGGTTACATGCGTGTTATCCTTTGTGTCTTAGTGTTCTATTGCTGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTACATGCGTGTTATCCTTTGTGTCTTAGTGTTCTATTGCTGTAAG  100

seq1  AGATACCATGATTATGGCAACTCTTATTTTAAAAAAGCCTTTACTTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCATGATTATGGCAACTCTTATTTTAAAAAAGCCTTTACTTGGGT  150

seq1  ATTTTTTGTAGTTTCTAGGATATAGTCTATTATGCTCATGTCAGGAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGTAGTTTCTAGGATATAGTCTATTATGCTCATGTCAGGAAGCA  200

seq1  CAGTAGCATCCAGGCATGTAGTTGAGAATTTTACATCCTGATTTCCAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCATCCAGGCATGTAGTTGAGAATTTTACATCCTGATTTCCAGAC  250

seq1  ATCAAGAAGAGATAGCTACTGGGCCTGCCTTCATCTTTTGAAACACCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAAGAGATAGCTACTGGGCCTGCCTTCATCTTTTGAAACACCAAA  300

seq1  GGCCACCCTCAGTGGTGACACACTTTCTCCAATAGGGCTACACCCACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCCTCAGTGGTGACACACTTTCTCCAATAGGGCTACACCCACTCC  350

seq1  AAGAAAGTAACACCTCCTAATATCTGTCGGGTGTCACCTCTCCCTAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTAACACCTCCTAATATCTGTCGGGTGTCACCTCTCCCTAATAA  400

seq1  TCAAGCATTCAGACATATGAGCCTATAGGGGCCATTCCTACTCAAACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCATTCAGACATATGAGCCTATAGGGGCCATTCCTACTCAAACTGC  450

seq1  CACATTCCAATACCTGGTGTCCATAGGTTTAAAGTTATATGTAATATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCCAATACCTGGTGTCCATAGGTTTAAAGTTATATGTAATATTGT  500

seq1  TTTGAATGAAAAATCCCCTCACTATTAGAAGGTATGATCTGGTTAGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGAAAAATCCCCTCACTATTAGAAGGTATGATCTGGTTAGAGAA  550

seq1  GTAGCAGCATTATTGAAGGAAGTTTGTTGCTAGGGGTTGGCTTTGGGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGCATTATTGAAGGAAGTTTGTTGCTAGGGGTTGGCTTTGGGTTT  600

seq1  CAAAAGCTGAAGCCAGGCCCTGTGGCTCTCTTTTCCTCCAGCCTGTGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTGAAGCCAGGCCCTGTGGCTCTCTTTTCCTCCAGCCTGTGGAC  650

seq1  ATAGATGTAGAATTC  665
      |||||||||||||||
seq2  ATAGATGTAGAATTC  665