BAC Information

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BAC

Clone NameB6Ng01-141H04
Chromosome3 (Build37)
Map Location 11,985,744 - 11,986,237
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383826, EG667978, LOC667999
Downstream geneEG621965, LOC100039798, EG668033, LOC668037
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141H04.bB6Ng01-141H04.g
ACCDH939904DH939905
length811855
definitionDH939904|Mus musculus domesticus DNA, BAC clone: B6Ng01-141H04, 5' end.DH939905|Mus musculus domesticus DNA, BAC clone: B6Ng01-141H04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaaaataggaagaatgaagtatggatgcttcagtcctatgtag
aaggaggggggggacaatataatcaagtaaagtagaggaggggcagggaa
ttgggaggagaaggagaaaaagaagggccaaattaggtatgggaagagat
gaaggagatgtacagagggtcagaaaattgaacagagttgtgtagcaatg
ggggatggggaactgtgggtagcaactagaaagtcccagatgctaggaac
acaagagcctcccaggactccacagggatgacattagctgaaatactcta
caaaggggagggtatgttgagaccatatccagaggttaggcatagccccc
tgcttgagggatggggccacccacccatctccaaaattttaacccaggat
agctcttgtctaaaagaaatacagggacaaagagtggaacagagactgaa
ggaaaggccgccccacctggggatccatcccacatgcagacaccaaaccc
agatactattgctgatgccaagaagtatctgctgacaggagcatgataca
tgctgtctcctgagaggctctgccagatcctgactaacacagatgtggat
gcttgcagccaaccattgtactgtgcacagggacccaaaaggaggagtta
ggcaaagactgaaggagttgaaggaaatggaaggggaggcccttggtcct
gtgaaggcttgataccccagtgtagagtaaagctaagatgaaaagtgagt
gtatgagtgggagaaaaccctcatatacgcagggtgaggaggaatggtga
ttttggtttgt
gaattctttgttgggtctttaagtggtttaggtatcagagtaattctggc
taaattgaatgaattgggtagagtaccttctgtttctattttgtggagta
gttggaggagaattggaattaggtcttctttgaaggcctgataaaactct
ttactaaacccatctggtcctgggcttttttttttttttttctttttcgg
ttgggggatatttaatgaccacttctatttctttaggggaaatgggacag
tttaatctgatcctgatttaactgtggtacctggtatctgtctaggaaat
tgtccatttcatccaggttttccagttttgttgagtttagccttttatag
taggatctgatgatgttttagatttcctcaggttttgttgttatgtctcc
tttttcatttctgattttgttaattaggatgctgtccctgtgccctctag
ttagtctggctaagggtttatctatcttgttgattttctcaaagaaccag
ctcctggtttggttgcttcttttaatagttctttttggttccacctggtt
gatttcagccctaagtttgattatttcctgcagtctacttctcttgagtg
aatttgcttccttttgttctagagcatataggtgtgctgtcaagctacta
gtgtgtactctctctagtttcttttttggaggcactcagagtgatgaatg
ttcctcttaagaatgttttcactttgtcccaaagtttgcttatattgttg
cttcatttaattaaattctaaaaggtcttttatctctttctttatttctt
ctttgaccaggtatcacagagtagagtgttgttcagttttcatgtgaatg
ttggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_11985744_11986237
seq2: B6Ng01-141H04.g_71_587 (reverse)

seq1  AGAATCAACCAAACCAGGAGCTGGTTCTTTGAGAAAGTCAACAAAATAGA  50
      |||| ||||||||||||||||||||||||||||||| ||||||| |||||
seq2  AGAAGCAACCAAACCAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGA  50

seq1  TAAACCCTTAGCCAGACTAACTAGAGGGCACAGAGAGAGCATCCTAATTA  100
      ||||||||||||||||||||||||||||||||| || |||||||||||||
seq2  TAAACCCTTAGCCAGACTAACTAGAGGGCACAGGGACAGCATCCTAATTA  100

seq1  ACAAAATCAGAAGTGAAAAGGGAGAGATAACAATAGAACCCAAGGAAATA  150
      |||||||||||| |||||| ||||| ||||||| | ||||  ||||||| 
seq2  ACAAAATCAGAAATGAAAAAGGAGACATAACAACAAAACCTGAGGAAAT-  149

seq1  AAAAAAAAACCATCAGAAACTACTACAAACGCCTTTACTCAACAAAACTG  200
         |||| | |||||||  |||||| ||| | ||  ||||||||||||||
seq2  -CTAAAACATCATCAGATCCTACTATAAAAGGCTAAACTCAACAAAACTG  198

seq1  GAAAACTTGGATGAAATGGACAATTTTCTAGACAGATACCAGGTGCCAAA  250
      |||||| ||||||||||||||||||| ||||||||||||||||| ||| |
seq2  GAAAACCTGGATGAAATGGACAATTTCCTAGACAGATACCAGGTACCACA  248

seq1  GATAAATCAGTATCAGATTAATGATCTAAGCAGTCCCATTTCCCCTAAAG  300
      | |||||||| |||||||        ||| | ||||||||||||||||||
seq2  GTTAAATCAGGATCAGAT--------TAAACTGTCCCATTTCCCCTAAAG  290

seq1  AAATAGAAATAGTCATTAATAGTCTCTCAACC------CCCCCCCCCAAA  344
      |||||||| | ||||||||   || | |||||               |||
seq2  AAATAGAAGTGGTCATTAAATATCCCCCAACCGAAAAAGAAAAAAAAAAA  340

seq1  AAAAAGCCCAGTACCAGATGGGTTTAGTGCAGAGTTCTATCAAATCTTCA  394
      ||||||||||| ||||||||||||||||  |||||| |||||   |||||
seq2  AAAAAGCCCAGGACCAGATGGGTTTAGTAAAGAGTTTTATCAGGCCTTCA  390

seq1  AAGAAGACCTAATACCAATACTACTCAAACTATTCCACAAAATATAAACC  444
      ||||||||||||| ||||| || ||| ||||| ||||||||||| |||| 
seq2  AAGAAGACCTAATTCCAATTCTCCTCCAACTACTCCACAAAATAGAAACA  440

seq1  AAA--------------------------AGCCACAATTACTCTGATACC  468
       ||                          ||||| |||||||||||||||
seq2  GAAGGTACTCTACCCAATTCATTCAATTTAGCCAGAATTACTCTGATACC  490

seq1  TAAACCAC-AAAAGACCCAACAAAGAA  494
      ||||||||  |||||||||||||||||
seq2  TAAACCACTTAAAGACCCAACAAAGAA  517