BAC Information

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BAC

Clone NameB6Ng01-141N17
Chromosome3 (Build37)
Map Location 117,879,213 - 118,028,527
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141N17.bB6Ng01-141N17.g
ACCDH940204DH940205
length473847
definitionDH940204|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N17, 5' end.DH940205|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,879,213 - 117,879,685)(118,027,680 - 118,028,527)
sequence
gaattcttctgagagcacgaacagtcgaacctgggctcataacacagaga
tgaaacactctttatggccgcattcattaaactactcgacagagtacaaa
gagcagctacagggagcttcccctaaaagcttttagtacaactctttcca
agacccattaaaccggcccagcactaaagtctctggcctcccccatatat
cgatctctatctctatggagccccctcttctgttcaactgaagtctgaga
taatttatctcttatgaacagtctatgaaaatgtcactaatactaaaatg
gcaagccaaaatgcaaaatgtgaggccattgtcttgtgttgtctgtacat
ctctgaagagtctagaagtataaatgcctataaactctatccctagattg
ccatttttaaagatttacttatttttcttcacatgtacgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtg
gaattcagcgtgaggtctacatctgtagaaagagctcatgctctggatta
gcttcattacacagctggacttgcatagacatggcaggagaacagcgagg
actctctcaggaatgggcacagaaagatgtagtgcgctgagatgaattct
cctttaaataaaaacgaagtcagattttagaatgaaattctctagtgctg
tcaaactgtttgaaactggatttggcagttgtcctttcaaactgttattt
cagagcacgtgtcccagaagggacagctaagaatgcttgtcatatttgaa
ctctttccagaaccattcagcaggatactggcagtccacttgttcgtgtt
aattatttctgccctgattgcctggcaacacataacatgggaagtattat
attttgctatttgagaatgcttccagcagaatgcagggagaaaatggaat
acaaagtcggctggaaatgtaacttaataagttaggtgtgtattttgatt
gaaaatttgttacagatgaagtggtttgtaatcccatgattgtgttaacc
acagtttcagagagcttgagggtgtctcagtggatattggtagaatgaaa
ctaatgatagatcttaatggccagcacaccacaatcgatgaacatgaatg
gtctcccttgtaggcagaatggatgcatatgtgtgtgtgaccatgtgtta
cacataggtatgatgggcagctgctcatgcaatgggatttgtttacctgt
gcctctctggtggggttgggaagaagagagcttgaatgacagactttata
gcactctataatggtttttttgtgtgtgtgtgtgtgtgaaaatgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117879213_117879685
seq2: B6Ng01-141N17.b_49_521

seq1  GAATTCTTCTGAGAGCACGAACAGTCGAACCTGGGCTCATAACACAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGAGAGCACGAACAGTCGAACCTGGGCTCATAACACAGAGA  50

seq1  TGAAACACTCTTTATGGCCGCATTCATTAAACTACTCGACAGAGTACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACACTCTTTATGGCCGCATTCATTAAACTACTCGACAGAGTACAAA  100

seq1  GAGCAGCTACAGGGAGCTTCCCCTAAAAGCTTTTAGTACAACTCTTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCTACAGGGAGCTTCCCCTAAAAGCTTTTAGTACAACTCTTTCCA  150

seq1  AGACCCATTAAACCGGCCCAGCACTAAAGTCTCTGGCCTCCCCCATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCATTAAACCGGCCCAGCACTAAAGTCTCTGGCCTCCCCCATATAT  200

seq1  CGATCTCTATCTCTATGGAGCCCCCTCTTCTGTTCAACTGAAGTCTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTCTATCTCTATGGAGCCCCCTCTTCTGTTCAACTGAAGTCTGAGA  250

seq1  TAATTTATCTCTTATGAACAGTCTATGAAAATGTCACTAATACTAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATCTCTTATGAACAGTCTATGAAAATGTCACTAATACTAAAATG  300

seq1  GCAAGCCAAAATGCAAAATGTGAGGCCATTGTCTTGTGTTGTCTGTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCAAAATGCAAAATGTGAGGCCATTGTCTTGTGTTGTCTGTACAT  350

seq1  CTCTGAAGAGTCTAGAAGTATAAATGCCTATAAACTCTATCCCTAGATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAGAGTCTAGAAGTATAAATGCCTATAAACTCTATCCCTAGATTG  400

seq1  CCATTTTTAAAGATTTACTTATTTTTCTTCACATGTACGTGTGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTAAAGATTTACTTATTTTTCTTCACATGTACGTGTGTGTGTGT  450

seq1  GTGTGTGTGTGTGTGTGTGTGTG  473
      |||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTG  473

seq1: chr3_118027680_118028527
seq2: B6Ng01-141N17.g_68_914 (reverse)

seq1  AAACATTATCACACACACACACACACAAAAAAACCATTATAGAGTGCTAT  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTCACACACACACACACACAAAAAAACCATTATAGAGTGCTAT  50

seq1  AAAGTCTGTCATTCAAAGCTCTCTTCTTCCCAACCCCACCAGAGAGGCAC  100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGTCATTC-AAGCTCTCTTCTTCCCAACCCCACCAGAGAGGCAC  99

seq1  AGGTAAACAAATCCCATTGCATGAGCAGCTGCCCATCATACCTATGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAACAAATCCCATTGCATGAGCAGCTGCCCATCATACCTATGTGTA  149

seq1  ACACATGGTCACACACACATATGCATCCATTCTGCCTACAAGGGAGACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGTCACACACACATATGCATCCATTCTGCCTACAAGGGAGACCA  199

seq1  TTCATGTTCATCGATTGTGGTGTGCTGGCCATTAAGATCTATCATTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTCATCGATTGTGGTGTGCTGGCCATTAAGATCTATCATTAGTT  249

seq1  TCATTCTACCAATATCCACTGAGACACCCTCAAGCTCTCTGAAACTGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTACCAATATCCACTGAGACACCCTCAAGCTCTCTGAAACTGTGG  299

seq1  TTAACACAATCATGGGATTACAAACCACTTCATCTGTAACAAATTTTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACAATCATGGGATTACAAACCACTTCATCTGTAACAAATTTTCAA  349

seq1  TCAAAATACACACCTAACTTATTAAGTTACATTTCCAGCCGACTTTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATACACACCTAACTTATTAAGTTACATTTCCAGCCGACTTTGTAT  399

seq1  TCCATTTTCTCCCTGCATTCTGCTGGAAGCATTCTCAAATAGCAAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTCTCCCTGCATTCTGCTGGAAGCATTCTCAAATAGCAAAATAT  449

seq1  AATACTTCCCATGTTATGTGTTGCCAGGCAATCAGGGCAGAAATAATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTCCCATGTTATGTGTTGCCAGGCAATCAGGGCAGAAATAATTAA  499

seq1  CACGAACAAGTGGACTGCCAGTATCCTGCTGAATGGTTCTGGAAAGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAACAAGTGGACTGCCAGTATCCTGCTGAATGGTTCTGGAAAGAGTT  549

seq1  CAAATATGACAAGCATTCTTAGCTGTCCCTTCTGGGACACGTGCTCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGACAAGCATTCTTAGCTGTCCCTTCTGGGACACGTGCTCTGAA  599

seq1  ATAACAGTTTGAAAGGACAACTGCCAAATCCAGTTTCAAACAGTTTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGTTTGAAAGGACAACTGCCAAATCCAGTTTCAAACAGTTTGACA  649

seq1  GCACTAGAGAATTTCATTCTAAAATCTGACTTCGTTTTTATTTAAAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAGAGAATTTCATTCTAAAATCTGACTTCGTTTTTATTTAAAGGAG  699

seq1  AATTCATCTCAGCGCACTACATCTTTCTGTGCCCATTCCTGAGAGAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATCTCAGCGCACTACATCTTTCTGTGCCCATTCCTGAGAGAGTCC  749

seq1  TCGCTGTTCTCCTGCCATGTCTATGCAAGTCCAGCTGTGTAATGAAGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGTTCTCCTGCCATGTCTATGCAAGTCCAGCTGTGTAATGAAGCTA  799

seq1  ATCCAGAGCATGAGCTCTTTCTACAGATGTAGACCTCACGCTGAATTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAGCATGAGCTCTTTCTACAGATGTAGACCTCACGCTGAATTC  847