BAC Information

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BAC

Clone NameB6Ng01-142A12
Chromosome3 (Build37)2 (Build37)
Map Location 41,059,066 - 41,059,73795,979,712 - 95,980,451
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142A12.bB6Ng01-142A12.g
ACCDH940334DH940335
length949740
definitionDH940334|Mus musculus domesticus DNA, BAC clone: B6Ng01-142A12, 5' end.DH940335|Mus musculus domesticus DNA, BAC clone: B6Ng01-142A12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,066 - 41,059,737)(95,979,712 - 95,980,451)
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccaccctcataagttctttatatgtattagatattagtctcc
tgtctgatttcagataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgcattgcagaagctttgcaattttat
gaggtcccatctgtcgattctcgatcttatagcacaagccattgctgttc
tattcaagaatatttcccctgtgcccatatatttgaggcttttccccact
ttctcctctataagtttcagtgcctctggttttatgtggagttccttaat
ccacttacatttaaccttagtacaaggagataggaatggatcaattcgca
ttcttctacatgataattgccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcctttgtccaagaccaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtcactataccagtaccatgcagtttttatcacaattgct
ctgtagtacagttttaggtcaggcatggtgattccaccagacgttcattt
atccttgagaagagtttttgctatcctaggttttttgttattccagatga
atttgcagattaccctttctaattcattgaagaattgagttgggattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tactatatttatcctgccaatccatgagcatgggagatctttccatcttt
tgagatattctttaatttctttcttcagagacttgaagttcttatcatac
agatctttcacttccttagttagaatcactccagacattttatatattt
gaattcaatttctgaagcttagtaaagatggaagaagagaattgttttca
ctgtattgcgttctgactgcaacctgcacaatttggcatatatcattacc
atatgcacatacattgatgataaataaagtaatctgaaatgattcatgaa
ggtgatattcacaaaagtattttgggttatagtccgaagcatccactagt
tacttagtatggccatagagctggggggaatgctcttcttgcttagacaa
caaggatgaaggttgtttttgtttttgtttttgttttgttttgttttgtt
ttgttttgttttgtttttgagacagggtttctctgtgtagccttggctgt
cctggaactcactctgtagaccaggctggccttgaactcagaaatccacc
tgtctctgcctcccaagggctgggattaaagacatgcaccaccactgcct
ggcaaggatgaaggttttagctgagtaattctgtaggcatcccgaacttc
tcaatcttggtgggaatgatagctgtacatgtacactagttcactgcaca
ataattgcctgatattttattgagtgaaacaaactcttgtctgtgcttaa
aaacagtaacacccattagtactaaataatatgtagtgtatccctatgta
gagagatctataaaatgcatatttatgtatatatgtatgtatatgtgtgt
atatatatatatatatatatatatatatatacatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059066_41059737
seq2: B6Ng01-142A12.b_47_718 (reverse)

seq1  TAGCAAAAACTCTTCTCAAGGATAACAGAACCTCTGGTGGAATCACCATG  50
      |||||||||||||||||||||||||  |||| ||||||||||||||||||
seq2  TAGCAAAAACTCTTCTCAAGGATAAATGAACGTCTGGTGGAATCACCATG  50

seq1  CCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTA  100
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  CCTGACCTAAAACTGTACTACAGAGCAATTGTGATAAAAACTGCATGGTA  100

seq1  CTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAG  150
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  CTGGTATAGTGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAG  150

seq1  AAACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAA  200
      ||| ||| ||||||||||||||||||||| |||| ||||| |||||||||
seq2  AAATGAACCCACACACCTATGGTCACTTGGTCTTGGACAAAGGAGCTAAA  200

seq1  ACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAA  250

seq1  CTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTT  300
      ||||   |||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGGCAATTATCATGTAGAAGAATGCGAATTGATCCATTCCTATCTCCTT  300

seq1  GTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAG  350
      |||||||||| |||| ||||||||| ||||||| ||||||||||||||||
seq2  GTACTAAGGTTAAATGTAAGTGGATTAAGGAACTCCACATAAAACCAGAG  350

seq1  ACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGT  400
       |||||||||||||||||||||||||||||||||||||  || |||||| 
seq2  GCACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTCAAATATATGGG  400

seq1  CACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGAT  450
      ||||||||||| |||| || ||||||||||||||||||||||| ||||||
seq2  CACAGGGGAAATATTCTTGAATAGAACAGCAATGGCTTGTGCTATAAGAT  450

seq1  TGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCA  500
       |||||| |||| |||||||||||| ||| |||||||||||||||| |||
seq2  CGAGAATCGACAGATGGGACCTCATAAAATTGCAAAGCTTCTGCAATGCA  500

seq1  AAAGACACCGTCAATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGAT  549
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  AAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGAT  550

seq1  CTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAG  599
      |||||||||||  |||||||| ||| |||||||||| |||| |||| |||
seq2  CTTTACCTATCTGAAATCAGACAGGAGACTAATATCTAATACATATAAAG  600

seq1  AACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGG  649
      |||| | || |||||| |||||||||||||||||||||||| ||||||||
seq2  AACTTATGAGGGTGGACTCCAGAAAATCAAATAACCCCATT-AAAAATGG  649

seq1  GGCTCAGAGCTAAACAAAGAATT  672
      |||||||||||||||||||||||
seq2  GGCTCAGAGCTAAACAAAGAATT  672

seq1: chr2_95979712_95980451
seq2: B6Ng01-142A12.g_69_808

seq1  GAATTCAATTTCTGAAGCTTAGTAAAGATGGAAGAAGAGAATTGTTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTCTGAAGCTTAGTAAAGATGGAAGAAGAGAATTGTTTTCA  50

seq1  CTGTATTGCGTTCTGACTGCAACCTGCACAATTTGGCATATATCATTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTGCGTTCTGACTGCAACCTGCACAATTTGGCATATATCATTACC  100

seq1  ATATGCACATACATTGATGATAAATAAAGTAATCTGAAATGATTCATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCACATACATTGATGATAAATAAAGTAATCTGAAATGATTCATGAA  150

seq1  GGTGATATTCACAAAAGTATTTTGGGTTATAGTCCGAAGCATCCACTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATATTCACAAAAGTATTTTGGGTTATAGTCCGAAGCATCCACTAGT  200

seq1  TACTTAGTATGGCCATAGAGCTGGGGGGAATGCTCTTCTTGCTTAGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTATGGCCATAGAGCTGGGGGGAATGCTCTTCTTGCTTAGACAA  250

seq1  CAAGGATGAAGGTTGTTTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATGAAGGTTGTTTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTGTT  300

seq1  TTGTTTTGTTTTGTTTTTGAGACAGGGTTTCTCTGTGTAGCCTTGGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTTGAGACAGGGTTTCTCTGTGTAGCCTTGGCTGT  350

seq1  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACC  400

seq1  TGTCTCTGCCTCCCAAGGGCTGGGATTAAAGACATGCACCACCACTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGCCTCCCAAGGGCTGGGATTAAAGACATGCACCACCACTGCCT  450

seq1  GGCAAGGATGAAGGTTTTAGCTGAGTAATTCTGTAGGCATCCCGAACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGATGAAGGTTTTAGCTGAGTAATTCTGTAGGCATCCCGAACTTC  500

seq1  TCAATCTTGGTGGGAATGATAGCTGTACATGTACACTAGTTCACTGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTTGGTGGGAATGATAGCTGTACATGTACACTAGTTCACTGCACA  550

seq1  ATAATTGCCTGATATTTTATTGAGTGAAACAAACTCTTGTCTGTGCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGCCTGATATTTTATTGAGTGAAACAAACTCTTGTCTGTGCTTAA  600

seq1  AAACAGTAACACCCATTAGTACTAAATAATATGTAGTGTATCCCTATGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTAACACCCATTAGTACTAAATAATATGTAGTGTATCCCTATGTA  650

seq1  GAGAGATCTATAAAATGCATATTTATGTATATATGTATGTATATGTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATCTATAAAATGCATATTTATGTATATATGTATGTATATGTGTGT  700

seq1  ATATATATATATATATATATATATATATATATATATATAT  740
      ||||||||||||||||||||||||||||||| ||||||||
seq2  ATATATATATATATATATATATATATATATACATATATAT  740