BAC Information

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BAC

Clone NameB6Ng01-142B06
Chromosome3 (Build37)
Map Location 6,088,869 - 6,090,075
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165
Downstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142B06.bB6Ng01-142B06.g
ACCDH940366DH940367
length1,1981,221
definitionDH940366|Mus musculus domesticus DNA, BAC clone: B6Ng01-142B06, 5' end.DH940367|Mus musculus domesticus DNA, BAC clone: B6Ng01-142B06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatacatgtttttgaggtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtaccgggtaattctaattgaagccatcatagcatgtaaaat
gatattccggagtgcagcttttctgtaatgtacacatgatatctgtggca
ggattttccctgtccaattacattaaaatattagtgcagcaagagttcat
ccatttgcctacaaaattcaagatgtccttgtttttaatgactaaataat
attccattgtgttagtgacccaaattttctgtgtccattcatgaattgag
gaacatctgggttgcttcaagtttccggctgttatgaataagacttctat
gaacatagtggagcaggtgtccttttggtatggtagagcatcttttggat
atatgacaaagagtgctatagctaagtcttcagatagaattatatattta
tgcagtgaacacaggcatgcccaatgttataaaaacaaacaaaagcagta
taaaagacaaagtgtcatgaacaaaataaaagtaaccaacacctcactct
catcaaaaaattattctataaaatagaacatgagagaataatatcgaact
catatatgaagtctgtataatcccgagaataccttgaataaaagcacaga
aatgaaacacaattataaaacaatatctctgataaaagtagatacatatt
tttcaatattacattgcaagtcacattaaatagatattagtagatcattg
accctcagggtctcttagaggaatggttcaaggacacacaccacataatt
gccattgagattcaagaatggactttgtcatttttcaagaatttgttatg
ataaaacatattactaaactactaatttgaattatttataaatacacaaa
aatcttgggaaaatagatttgtgtatgtatatatctatatatgcatatgt
acatatacacatagtttgtggtagacatttaaattgctacatatacctaa
agtaatatattaaaagttaagttgtcaaaatatatgcatacatataagat
tagaagactattctttagcataataaatgtacatgaaataatgctttagg
cacacctatgctaaagaacaaaatttctatagcatttcatctaatcggaa
atgaagataagggatgatcatcccagcttattaaattagtggcttgaa
gaattctttaactctgtaaccccatcttcaatagggttattttttttcct
agactccaatttcttgggtgatatatatatatatatatatatatatatat
atatatatatcccctatcagatttaagattggcaaagatttttttttccc
aatctgttggtggcgtttttgtattattgacagtgttctttgccttacag
aagctttgcaattttatgaggtcccatttttcagttcttgatatatagca
aaccagtagccaacatcaaactaaatggagagaaactggaagcaatctca
ctaaaattagggactagacaaggctgcccagtttctccctacatattcaa
tataatacctgaattcctagccagagcaattagacaacaaaaggagatca
aggggatacaatttggaaaggaagaagtcaaaatatcactatttgcagat
gatatgaccctaaaaactccactagagaactcctaaagctgataaacaac
ttcctcaagtggcttgatataagattaacaaatcggtggcttctgtctac
acagaggataaacaggctgagaaagaaattagggaaacaacacccttcac
aatagtcacaaataatataaaataccttggcatgactctaactaagggag
tgaaagatcagcatgataagaatttccaagtctctgaagaaagaaatcaa
agatctcagaagatggaaagatcccccatgcacatagatgccaggattaa
tataataaaaatggctttatttctgaaagtagtctgcagattcaatccaa
ttcccatcaaaattccaaagcaattcttcaccaagttagaaagggcaatt
tgcaaattaatctggaataacaaaaaacctaggttagcaaaaattactct
caacagtaaaggacctctggcagatcaccatgcctgacctcaagctgcac
tacaaagcaattgttgataaaactgcatggtactgtacatgacagatagt
tgatcattggaatagatccgagaccagaaatgaccataccctatggtcct
gatctttgacaaggaatctaaacaacccgtggtaaaaattacgctatcac
aaatgtgctggccatcagccgtttatgaaagaaagtgaatgattcatctg
atctcggtcagtcagtctagaatcatggcatccattaactacctgcactc
ataggggacagcgataggtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6088869_6090075
seq2: B6Ng01-142B06.b_45_1242

seq1  GAATTCAATACATGTTTTTGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATACATGTTTTTGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGT  50

seq1  GTGTGTGTGTACCGGGTAATTCTAATTGAAGCCATCATAGCATGTAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTACCGGGTAATTCTAATTGAAGCCATCATAGCATGTAAAAT  100

seq1  GATATTCCGGAGTGCAGCTTTTCTGTAATGTACACATGATATCTGTGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCCGGAGTGCAGCTTTTCTGTAATGTACACATGATATCTGTGGCA  150

seq1  GGATTTTCCCTGTCCAATTACATTAAAATATTAGTGCAGCAAGAGTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTCCCTGTCCAATTACATTAAAATATTAGTGCAGCAAGAGTTCAT  200

seq1  CCATTTGCCTACAAAATTCAAGATGTCCTTGTTTTTAATGACTAAATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGCCTACAAAATTCAAGATGTCCTTGTTTTTAATGACTAAATAAT  250

seq1  ATTCCATTGTGTTAGTGACCCAAATTTTCTGTGTCCATTCATGAATTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATTGTGTTAGTGACCCAAATTTTCTGTGTCCATTCATGAATTGAG  300

seq1  GAACATCTGGGTTGCTTCAAGTTTCCGGCTGTTATGAATAAGACTTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCTGGGTTGCTTCAAGTTTCCGGCTGTTATGAATAAGACTTCTAT  350

seq1  GAACATAGTGGAGCAGGTGTCCTTTTGGTATGGTAGAGCATCTTTTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAGTGGAGCAGGTGTCCTTTTGGTATGGTAGAGCATCTTTTGGAT  400

seq1  ATATGACAAAGAGTGCTATAGCTAAGTCTTCAGATAGAATTATATATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACAAAGAGTGCTATAGCTAAGTCTTCAGATAGAATTATATATTTA  450

seq1  TGCAGTGAACACAGGCATGCCCAATGTTATAAAAACAAACAAAAGCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGAACACAGGCATGCCCAATGTTATAAAAACAAACAAAAGCAGTA  500

seq1  TAAAAGACAAAGTGTCATGAACAAAATAAAAGTAACCAACACCTCACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGACAAAGTGTCATGAACAAAATAAAAGTAACCAACACCTCACTCT  550

seq1  CATCAAAAAATTATTCTATAAAATAGAACATGAGAGAATAATATCGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAAAATTATTCTATAAAATAGAACATGAGAGAATAATATCGAACT  600

seq1  CATATATGAAGTCTGTATAATCCCGAGAATACCTTGAATAAAAGCACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGAAGTCTGTATAATCCCGAGAATACCTTGAATAAAAGCACAGA  650

seq1  AATGAAACACAATTATAAAACAATATCTCTGATAAAAGTAGATACATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACACAATTATAAAACAATATCTCTGATAAAAGTAGATACATATT  700

seq1  TTTCAATATTACATTGCAAGTCACATTAAATAGATATTAGTAGATCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATATTACATTGCAAGTCACATTAAATAGATATTAGTAGATCATTG  750

seq1  ACCCTCAGGGTCTCTTAGAGGAATGGTTCAAGGACACACACCACATAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGGGTCTCTTAGAGGAATGGTTCAAGGACACACACCACATAATT  800

seq1  GCCATTGAGATTCAAGAATGGACTTTGTCAATTTTTCAAGAATTTGTTAT  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCCATTGAGATTCAAGAATGGACTTTGTC-ATTTTTCAAGAATTTGTTAT  849

seq1  GATAAAACATATTACTAAACTACTAATTTGAATTATTTATAAAATACACA  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GATAAAACATATTACTAAACTACTAATTTGAATTATTTAT-AAATACACA  898

seq1  AAAATCTTGGGAAAATAGATTTGTGTATGTATATATCTATATATGCATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTGGGAAAATAGATTTGTGTATGTATATATCTATATATGCATAT  948

seq1  GTACATATACACATAGTTTGTGGTAGACATTTAAATTGCTACATATACCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATACACATAGTTTGTGGTAGACATTTAAATTGCTACATATACCT  998

seq1  AAAGT-ATATATTAAAAGTTTAGTGGTCATAAATATATGCATACATATAA  1049
      ||||| |||||||||||||| ||| |||| ||||||||||||||||||||
seq2  AAAGTAATATATTAAAAGTTAAGTTGTCA-AAATATATGCATACATATAA  1047

seq1  GATTAGGAAGACTATTCTTTAGCATAATAAATGGTACATGAAATAATGCT  1099
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  GATTA-GAAGACTATTCTTTAGCATAATAAAT-GTACATGAAATAATGCT  1095

seq1  ATAGGCAACACTATGCTAAAAGACAAAATTCTAAAAGCATTTCATCTAAA  1149
       ||||||   ||||||||||  ||||||||   | ||||||||||||  |
seq2  TTAGGCACACCTATGCTAAAGAACAAAATTTCTATAGCATTTCATCT--A  1143

seq1  ATCAGAAATG-AGATAA-GGATGATCATTCCCAATGCTTTTATTAAATAT  1197
      ||| |||||| |||||| ||||||||| |||||  ||  ||||||||| |
seq2  ATCGGAAATGAAGATAAGGGATGATCA-TCCCA--GC--TTATTAAAT-T  1187

seq1  AGT-GCTTGAA  1207
      ||| |||||||
seq2  AGTGGCTTGAA  1198