BAC Information

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BAC

Clone NameB6Ng01-142F03
Chromosome3 (Build37)
Map Location 159,312,567 - 159,313,521
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041008, LOC668905, LOC668907, Depdc1a, Rpe65
Downstream geneGpr177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142F03.bB6Ng01-142F03.g
ACCDH940546DH940547
length1,2051,002
definitionDH940546|Mus musculus domesticus DNA, BAC clone: B6Ng01-142F03, 5' end.DH940547|Mus musculus domesticus DNA, BAC clone: B6Ng01-142F03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatctgtgtgccagtcctcttgtatctagaaggtctttattcttt
actgttctccatctcatctggctcatacactctttcaccttctcttcagt
ttttttctgagacctgagaggagggatttgatggagacattccatttaca
tttacaagtgttccaagatctctcactcagcataatgtctagctgtgtgg
gtctccgtacattattcctacctgctgcagagaaaagcttctctgatgat
ggctgagcatgacactgatttatgagtatagcagaatgtcattaagtgtc
attgctatgttttgttttgttttaaaatagtaatgtttggttttagccta
gtttatctagtccaggttcttggtcagccaagcagtattgggtatcaatt
ccatctcattgggtggacttaagtcaaatcagatattggttggttacctc
tatcagctttgtacccccatttcattagtatatcttgtaggcaggacgct
attgtagatcaaagggtttatggctaggttagtgtttacatttctctttt
catagtgttcagagtaacttcctgtattaaagatgttagcaaatagggtt
gaaggctttatgtaggcaccatgttttttcatgtttaatgagttgtgttg
gtgttgtcttcagcagcagggttttaccataggtttgtggagagctacca
atagtcttggcattaacttgggttgtttgggattcttatgggtcctcttt
gaccaacaactcaattagatgtgacccattgctggtactggaagcttcat
tgttgatgaaagatatccagttggggctttgtctcactagttatttggtg
atttttatttagatttttttcatatatgtatatattaaagagtttttact
atattactatattaggttccaaatggcccttagttttagatgtcttctca
gatcacttgcttgcccacactcacttccccttctttccacttgattgtct
gtctagccccctccccacaaccacccacatacactcattcttcatcatag
ctatcagtctatttccctttctgggaatctattctcacctagcccttatt
tcttaactcgtggtctatggatggaactgtaatacatgactaacgctaca
accaattaagtgatactatccatatattgctctttgggtgagatgactct
cactg
gaattctttgtttagctctgcaccccatttttaatggggttatttgactt
tctggagtccaccttcttgagctctttatatatattggatattagtcccc
tatcagatttaggattggtaaaaaaatcccttcccaatctgttggtggcc
ttttttttttttgtcttttttttttgtctttttttttttttttttgtggg
tgtgtcttattgacagtatcttttgccttacagaagccttgcaattttat
gaggtcccatttggcaattcttgatcttacagcacagaccatttctgttc
tgttaaggaatttttcccctgtgcccgtatctttgaggcctttccccact
ttctcctctattaatttcagtgtctctggttttatgtggaggtctttgat
ccacttagacttgaactttgtacaaggatataagaatggatcaattcaca
ttcttctacttgataaccgccagttgtgctagcaacatttgttgaaaatg
ctgtcttttttcccactggatggttttagctcccttgtcaaagatcaagt
ggcaatgttttagaatgagtgaatacgtctattaagcattaaaaataaag
cataattttagtacaatgcaaataattttttgaatgtatagaagaacaat
ttgtatatatacttctagagggatggggaatatgagttttgacaaaaata
gcaagaggtatataagataaaaacatgtacaaagagccttcttgatgata
gaaatcaagaagcaaagatatatgcgaaattgtcacaaacagaaaaacta
tcagaggatttttttttccttttagtgtaagttactctgcaatgtcttct
tattactgaggtagacttttagcacttcatgaagtttccaacaaaaagta
actttaagtttaattgtttgatcactagcactgcataaatgaggtctata
agcaagtgtatctagcactttttctaaagaggcaggtagacagagtcagg
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_159312567_159313521
seq2: B6Ng01-142F03.g_123_1069 (reverse)

seq1  GTCCTGAACTCCTGGTCTACCTGCCTCTATTAG-AAAAGTGCTAGGATTA  49
      |||||| ||||   |||||||||||||| |||| |||||||||||   ||
seq2  GTCCTG-ACTC--TGTCTACCTGCCTCT-TTAGAAAAAGTGCTAG--ATA  44

seq1  CACTGGGCCTTATTAGACCTCATTTATGCAGTGCTAGTGATCAAACAATT  99
      |||| |  |||| |||||||||||||||||||||||||||||||||||||
seq2  CACTTG--CTTA-TAGACCTCATTTATGCAGTGCTAGTGATCAAACAATT  91

seq1  AAACTTTAAAGTTACTTTTTGTTGGAAACTTCATGAAGTGCTAAAAGTCT  149
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAC-TTAAAGTTACTTTTTGTTGGAAACTTCATGAAGTGCTAAAAGTCT  140

seq1  ACCTCAGTAATAAGAAGACATTGCAGAGTAACTTACACTAAAAGGAAAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGTAATAAGAAGACATTGCAGAGTAACTTACACTAAAAGGAAAAA  190

seq1  AAAATCCTCTGATAGTTTTTCTGTTTGTGACAATTTCGCATATATCTTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTCTGATAGTTTTTCTGTTTGTGACAATTTCGCATATATCTTTG  240

seq1  CTTCTTGATTTCTATCATC-AGAAGGCTCTTTGTACATGTTTTTATCTTA  298
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTCTTGATTTCTATCATCAAGAAGGCTCTTTGTACATGTTTTTATCTTA  290

seq1  TATACCTCTTGCTATTTTTGTCAAAACTCATATTCCCCATCCCTCTAGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTCTTGCTATTTTTGTCAAAACTCATATTCCCCATCCCTCTAGAA  340

seq1  GTATATATACAAATTGTTCTTCTATACATTCAAAAAATTATTTGCATTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATACAAATTGTTCTTCTATACATTCAAAAAATTATTTGCATTGT  390

seq1  ACTAAAATTATGCTTTATTTTTAATGCTTAATAGACGTATTCACTCATTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATTATGCTTTATTTTTAATGCTTAATAGACGTATTCACTCATTC  440

seq1  TAAAACATTGCCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATTGCCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGG  490

seq1  GAAAAAAGACAGCATTTTCAACAAATGTTGCTAGCACAACTGGCGGTTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGACAGCATTTTCAACAAATGTTGCTAGCACAACTGGCGGTTAT  540

seq1  CAAGTAGAAGAATGTGAATTGATCCATTCTTATATCCTTGTACAAAGTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGAAGAATGTGAATTGATCCATTCTTATATCCTTGTACAAAGTTC  590

seq1  AAGTCTAAGTGGATCAAAGACCTCCACATAAAACCAGAGACACTGAAATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTAAGTGGATCAAAGACCTCCACATAAAACCAGAGACACTGAAATT  640

seq1  AATAGAGGAGAAAGTGGGGAAAGGCCTCAAAGATACGGGCACAGGGGAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGGAGAAAGTGGGGAAAGGCCTCAAAGATACGGGCACAGGGGAAA  690

seq1  AATTCCTTAACAGAACAGAAATGGTCTGTGCTGTAAGATCAAGAATTGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTTAACAGAACAGAAATGGTCTGTGCTGTAAGATCAAGAATTGCC  740

seq1  AAATGGGACCTCATAAAATTGCAAGGCTTCTGTAAGGCAAAAGATACTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGACCTCATAAAATTGCAAGGCTTCTGTAAGGCAAAAGATACTGT  790

seq1  CAATAAGACACACACACAAAAAAAAAAAAAAAAAGACAAAAAAAAAAGAC  848
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAATAAGACACACCCACAAAAAAAAAAAAAAAAAGACAAAAAAAAAAGAC  840

seq1  AAAAAAAAAAAAGGCCACCAACAGATTGGGAAGGGATTTTTTTACCAATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGGCCACCAACAGATTGGGAAGGGATTTTTTTACCAATC  890

seq1  CTAAATCTGATAGGGGACTAATATCCAATATATATAAAGAGCTCAAGAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTGATAGGGGACTAATATCCAATATATATAAAGAGCTCAAGAAG  940

seq1  GTGGACT  955
      |||||||
seq2  GTGGACT  947