BAC Information

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BAC

Clone NameB6Ng01-142F04
Chromosome3 (Build37)
Map Location 113,533,060 - 113,534,025
singlet/doubletsinglet
Overlap genenone
Upstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1, Rnpc3
Downstream geneCol11a1, LOC100043220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142F04.bB6Ng01-142F04.g
ACCDH940548DH940549
length1,260962
definitionDH940548|Mus musculus domesticus DNA, BAC clone: B6Ng01-142F04, 5' end.DH940549|Mus musculus domesticus DNA, BAC clone: B6Ng01-142F04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaaactgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattgtattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccaccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagacg
aatttgcaaattgctccttctaattcattgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcctctttaatttctttcttcagagatttgaagtttttatcata
cagatcttggttacccctctaccaagcccctagtccattactgctttccc
tatcccatttgcctgtatgagagtgctccccaacctgcctacactctcct
gcccaccacttcagcatccccttactctgggtcatcaaatagcccaaggg
accaggctctccttcagctgctaatcaggcaaaacaattctctgctacat
tatatgtgggagcatggaatccctcagtaacattcttggaaggtgctaga
acttggggtgactgggaagggatgccagttgtctttcaatggcaattccc
tgtcctgtccttttgcgcagattcccacaggagcaccctagatgtacaag
tgatagagtg
gaattcaaagcttatgaaaaatagactcaagttgaaaatctgaaagggta
atgtcagaagtattggcaactcagtattgtgtgaagaacagaaaaaagta
gttactaagacagtaagccacaatcatgtcatttcccacatggaaataag
aattaatcataaaatgatctaagttgttgtgctatatttacagtaaaatg
aaaagataatccatcttcatagtaggcaaactttacaggaaagaattttc
agaccatgtgggttttggttttcattttggggttgtgatttattcttttt
ggtttgttttccactcttcacagaggtgtccagaataccagggtggaaga
gcattcctggccaggaacatagaaagaaatattttctaaactattattaa
aaggaaaaaagttcataagattaataagtaaaacaaatctgatccttctc
taagaagtatttggctttattctacaaaacaaatacatagacaaagtctt
ttcttcattcaccaggcagcttttattgaataatagagaattaaaatatg
gacaattcacatatatataaaaaagcagagttctttgacctaaacctgca
aaaactaatgtaatgaaggcaactttcaacttagttatttagaccttact
ggtgtatctcatttccaaagtattcatgaaagtagctaaaaaatttttaa
taaatatacaaaatttacaagaaagataaatatttaggatgcccaattta
attatatttgtgtattatgctttaccatttacattttacagaacagatgt
aagactctcgtttaacttatgtaaaatttcatagacatcagttcctaccc
ctgcatgtattttataaatacactttcatactgaatgatgggagtatata
agacataggggatgaaaggtgcctgtgtataactatttgttctgtgattt
ctttcttctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_113533060_113534025
seq2: B6Ng01-142F04.g_68_1029

seq1  GAATTCAAAGCTTATGAAAAATAGACTCAAGTTGAAAATCTGAAAGGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCTTATGAAAAATAGACTCAAGTTGAAAATCTGAAAGGGTA  50

seq1  ATGTCAGAAGTATTGGCAACTCAGTATTGTGTGAAGAACAGAAAAAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGAAGTATTGGCAACTCAGTATTGTGTGAAGAACAGAAAAAAGTA  100

seq1  GTTACTAAGACAGTAAGCCACAATCATGTCATTTCCCACATGGAAATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTAAGACAGTAAGCCACAATCATGTCATTTCCCACATGGAAATAAG  150

seq1  AATTAATCATAAAATGATCTAAGTTGTTGTGCTATATTTACAGTAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATCATAAAATGATCTAAGTTGTTGTGCTATATTTACAGTAAAATG  200

seq1  AAAAGATAATCCATCTTCATAGTAGGCAAACTTTACAGGAAAGAATTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATAATCCATCTTCATAGTAGGCAAACTTTACAGGAAAGAATTTTC  250

seq1  AGACCATGTGGGTTTTGGTTTTCATTTTGGGGTTGTGATTTATTCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATGTGGGTTTTGGTTTTCATTTTGGGGTTGTGATTTATTCTTTTT  300

seq1  GGTTTGTTTTCCACTCTTCACAGAGGTGTCCAGAATACCAGGGTGGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTTTTCCACTCTTCACAGAGGTGTCCAGAATACCAGGGTGGAAGA  350

seq1  GCATTCCTGGCCAGGAACATAGAAAGAAATATTTTCTAAACTATTATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCTGGCCAGGAACATAGAAAGAAATATTTTCTAAACTATTATTAA  400

seq1  AAGGAAAAAAGTTCATAAGATTAATAAGTAAAACAAATCTGATCCTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAAAGTTCATAAGATTAATAAGTAAAACAAATCTGATCCTTCTC  450

seq1  TAAGAAGTATTTGGCTTTATTCTACAAAACAAATACATAGACAAAGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGTATTTGGCTTTATTCTACAAAACAAATACATAGACAAAGTCTT  500

seq1  TTCTTCATTCACCAGGCAGCTTTTATTGAATAATAGAGAATTAAAATATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTCACCAGGCAGCTTTTATTGAATAATAGAGAATTAAAATATG  550

seq1  GACAATTCACATATATATAAAAAAGCAGAGTTCTTTGACCTAAACCTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTCACATATATATAAAAAAGCAGAGTTCTTTGACCTAAACCTGCA  600

seq1  AAAACTAATGTAATGAAGGCAACTTTCAACTTAGTTATTTAGACCTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAATGTAATGAAGGCAACTTTCAACTTAGTTATTTAGACCTTACT  650

seq1  GGTGTATCTCATTTCCAAAGTATTCATGAAAGTAGCTAAAAAATTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATCTCATTTCCAAAGTATTCATGAAAGTAGCTAAAAAATTTTTAA  700

seq1  TAAATATACAAAATTTACAAGAAAGATAAATATTTAGGATGCCCAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATACAAAATTTACAAGAAAGATAAATATTTAGGATGCCCAATTTA  750

seq1  ATTATATTTGTGTATTATGCTTTACCATTTACATTTTACAGAACAGATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTGTGTATTATGCTTTACCATTTACATTTTACAGAACAGATGT  800

seq1  AAGACTCTCGTTTAACTTATGTAAAATTTCATAGACATCAGTTCCTACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTCGTTTAACTTATGTAAAATTTCATAGACATCAGTTCCTACCC  850

seq1  CTGCATGTATTTTATAAATACACTTTCATACTGAATGATGGGAGTATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTATTTTATAAATACACTTTCATACTGAATGATGGGAGTATATA  900

seq1  AGACATAGGGGATGAAAGGTGCCTGTGTATAACTATTTGTTCTGTGATTT  950
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  AGACATAGGGGATGAAAGGTGCCTGTGTATAACTATTTGTTCTGTGA---  947

seq1  CTTTCTTTCTTCTCTC  966
       |||||||||||||||
seq2  -TTTCTTTCTTCTCTC  962