BAC Information

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BAC

Clone NameB6Ng01-142F14
Chromosome3 (Build37)1 (Build37)
Map Location 41,059,224 - 41,059,7376,763,560 - 6,764,667
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142F14.bB6Ng01-142F14.g
ACCDH940568DH940569
length9731,104
definitionDH940568|Mus musculus domesticus DNA, BAC clone: B6Ng01-142F14, 5' end.DH940569|Mus musculus domesticus DNA, BAC clone: B6Ng01-142F14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(6,763,560 - 6,764,667)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttccttatatatattggatattagtccc
ctatctgatttaggattggtaaagatcctttcccaatctgttggtggcct
atttgccttcttgacagtgtcctttgctttacagaagctttgcaatttta
tgagatcccatttgtcagttctcgatcttacagcaccagccattgctgtt
ctgttaaagaatttttcccctgtgcccatatctttgaggctttccccaac
tttctcctctataagtttaagtgtctctggttttatgtggtgttccttga
tccacttagctttgtacaaggagataagaatggatcaattcacattcttc
tacatgataaccaccagttgagtcaacacaatttgttgaaaatactgtct
tttttccactggatggttttagctactttgtgaaagatcaagtgaccata
ggtgggtgggttcatttctgggtctaattctattccattcatctacctgt
ttgtctttgtaccatgcagctgttatcacaattgttctatagtgcagctt
gagttcaggcattctatcagaggttcttcttttatttttgagaatagttt
ttgctctcctaggttttttgttattccaggtgaatttgcaaattgcccct
tctaacttggtgaagaattgagttggaattttgatggggattgcattgaa
tctgtagattgcttttggcaagatagtcatttttattatattaatcctgc
caatccatgagcatgggagatcattccatcttctgagatctttttcaatt
tctttcttcatagacttgaaattctaatcatacagatctttcacttcctt
agttaaagtcacactaaggtattttatattatttgtgattatgtgaaggt
gtgtttccctaatttctttctca
gaattcttttcccaacataggagttatgattactttgcagagaaggctag
tgactttatagaatacactttaaaatgaactgtgcatgttactgctttca
gagtgactactttcaaaaaaggactaatacaaatgaagctaatttcaata
tattgtatattgttcatggcactaataaaaattgatactgacagtctcat
cttcttattattctgtgtgccagctactatcatcaccattaaaaaagcaa
tttataaccactggcccatctttaatcatcttccttgttagcatttccac
ttttcctctaacatgttcaggttacaggtagtgtagagaaagctctgctg
tcgtcctcagtcacagccagaacatcacctcagctctcttcctactacca
ctgtctgacattgaaaccccaggccattgtatctactcattctggtaact
ggctcatgtgttggcaaccagtccacactcatcctctagttaggaaaaca
tattcttctgacctctgaaataactttcttatgtgactccttagagagac
aaataaacacaaggccctgaggtacatcattgtccttatgtgatctatta
ctgttaccaatttgttggctcaagtgaagtgtctactttgatgtctcttc
atactttcttttcttgaatattttactttacttaaaaccccaccttttga
cattttaagtattaaactgctgaatcttttatgaattctaaccaataagt
taaaaacctaatgctgtaaacatacatgaaaactttcctaacttacaaag
ttaaatggtgtccagtttttcttatgtttcctcatgttaatactttatac
attccagtttaataaaataaagtttccattagtagtcatgatgatattaa
aaactgcatgaatatttctaataacttggtaactaacaactaagaaatat
taccagaaactacttggtagagagcaccttaaattctatccaggagcctt
ttacaggaatgaaaacaagtgaagtttgctgtagcaaaccctcattgaac
tattttatacctatcgtgtatttgtgattgcataaatctgatgccactag
cact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-142F14.b_47_554 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||| |||||||||||||||||||||  |||| | |||||||||||||||
seq2  CCACCCACCTATGGTCACTTGATCTTTCACAAAGTAGCTAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      ||||||||||||||| ||||||||||||| ||| || | |||||||| ||
seq2  GTGGAAAAAAGACAGTATTTTCAACAAATTGTGTTGACTCAACTGGTGGT  100

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      ||||||||||||||||| ||||||||||| || ||||||||||||     
seq2  TATCATGTAGAAGAATGTGAATTGATCCATTCTTATCTCCTTGTA-----  145

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
        |||| |||||||||||||||||| ||||||||||||||||||||| ||
seq2  --CAAAGCTAAGTGGATCAAGGAACACCACATAAAACCAGAGACACTTAA  193

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      |||||||||||||||||| ||| |||||||  ||||||||| ||||||||
seq2  ACTTATAGAGGAGAAAGTTGGGGAAAGCCTCAAAGATATGGGCACAGGGG  243

seq1  AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATA  300
      |||||||| |  | ||||||||||||||| |||||||||||| |||||  
seq2  AAAAATTCTTTAACAGAACAGCAATGGCTGGTGCTGTAAGATCGAGAACT  293

seq1  GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACAC  350
      ||||||||||| ||||| ||| ||||||||||||| || ||||| |||||
seq2  GACAAATGGGATCTCATAAAATTGCAAAGCTTCTGTAAAGCAAAGGACAC  343

seq1  CGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCT  399
       ||||| ||| |||| ||| ||||||||||||||||||||||||||||| 
seq2  TGTCAAGAAGGCAAATAGGCCACCAACAGATTGGGAAAGGATCTTTACCA  393

seq1  ATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAG  449
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  ATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAGGAACTCAAG  443

seq1  AAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  499
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  493

seq1  GCTAAACAAAGAATT  514
      |||||||||||||||
seq2  GCTAAACAAAGAATT  508

seq1: chr1_6763560_6764667
seq2: B6Ng01-142F14.g_67_1170

seq1  GAATTCTTTTCCCAACATAGGAGTTATGATTACTTTGCAGAGAAGGCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCCAACATAGGAGTTATGATTACTTTGCAGAGAAGGCTAG  50

seq1  TGACTTTATAGAATACACTTTAAAATGAACTGTGCATGTTACTGCTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTATAGAATACACTTTAAAATGAACTGTGCATGTTACTGCTTTCA  100

seq1  GAGTGACTACTTTCAAAAAAGGACTAATACAAATGAAGCTAATTTCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACTACTTTCAAAAAAGGACTAATACAAATGAAGCTAATTTCAATA  150

seq1  TATTGTATATTGTTCATGGCACTAATAAAAATTGATACTGACAGTCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATATTGTTCATGGCACTAATAAAAATTGATACTGACAGTCTCAT  200

seq1  CTTCTTATTATTCTGTGTGCCAGCTACTATCATCACCATTAAAAAAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTATTATTCTGTGTGCCAGCTACTATCATCACCATTAAAAAAGCAA  250

seq1  TTTATAACCACTGGCCCATCTTTAATCATCTTCCTTGTTAGCATTTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACCACTGGCCCATCTTTAATCATCTTCCTTGTTAGCATTTCCAC  300

seq1  TTTTCCTCTAACATGTTCAGGTTACAGGTAGTGTAGAGAAAGCTCTGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTAACATGTTCAGGTTACAGGTAGTGTAGAGAAAGCTCTGCTG  350

seq1  TCGTCCTCAGTCACAGCCAGAACATCACCTCAGCTCTCTTCCTACTACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCTCAGTCACAGCCAGAACATCACCTCAGCTCTCTTCCTACTACCA  400

seq1  CTGTCTGACATTGAAACCCCAGGCCATTGTATCTACTCATTCTGGTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGACATTGAAACCCCAGGCCATTGTATCTACTCATTCTGGTAACT  450

seq1  GGCTCATGTGTTGGCAACCAGTCCACACTCATCCTCTAGTTAGGAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATGTGTTGGCAACCAGTCCACACTCATCCTCTAGTTAGGAAAACA  500

seq1  TATTCTTCTGACCTCTGAAATAACTTTCTTATGTGACTCCTTAGAGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCTGACCTCTGAAATAACTTTCTTATGTGACTCCTTAGAGAGAC  550

seq1  AAATAAACACAAGGCCCTGAGGTACATCATTGTCCTTATGTGATCTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACACAAGGCCCTGAGGTACATCATTGTCCTTATGTGATCTATTA  600

seq1  CTGTTACCAATTTGTTGGCTCAAGTGAAGTGTCTACTTTGATGTCTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTACCAATTTGTTGGCTCAAGTGAAGTGTCTACTTTGATGTCTCTTC  650

seq1  ATACTTTCTTTTCTTGAATATTTTACTTTACTTAAAACCCCACC-TTTGA  699
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATACTTTCTTTTCTTGAATATTTTACTTTACTTAAAACCCCACCTTTTGA  700

seq1  CATTTTAAGTATTAAACTGCTGAATCTTTTATGAATTCTAACCAATAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAGTATTAAACTGCTGAATCTTTTATGAATTCTAACCAATAAGT  750

seq1  TAAAAACCTAATGCTGTAAACATACATGAAAACTTTCCTAACTTACAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCTAATGCTGTAAACATACATGAAAACTTTCCTAACTTACAAAG  800

seq1  TTAAATGGTGTCCAGTTTTTCTTATGTTTCCTCATGTTAATACTTTATAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGGTGTCCAGTTTTTCTTATGTTTCCTCATGTTAATACTTTATAC  850

seq1  ATTCAAGTTTAATAAAATAAAGTTTCCATTAGTAGTCATGATGATATT-A  898
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTCCAGTTTAATAAAATAAAGTTTCCATTAGTAGTCATGATGATATTAA  900

seq1  AAACTGCATGAATATTTCTAATAACTTGGTAACTAACAACTAAGAAAATA  948
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAACTGCATGAATATTTCTAATAACTTGGTAACTAACAACTAAG-AAATA  949

seq1  TTACCAGAAACTTACTTGGTAGAGAAGCACCTTAAAATCTATCCAGGAAG  998
      ||||||||||| |||||||||||| ||||||||||| |||||||||| ||
seq2  TTACCAGAAAC-TACTTGGTAGAG-AGCACCTTAAATTCTATCCAGG-AG  996

seq1  CCTTTTACAGGAATGAAAACAAAGTGAAGTTTGCTGTTTAGCAAAAACAC  1048
      |||||||||||||||||||| |||||||||||||||  ||||  |||| |
seq2  CCTTTTACAGGAATGAAAAC-AAGTGAAGTTTGCTG--TAGC--AAACCC  1041

seq1  TCAATGAACTATTATAATACTATCGTGTATTTGTGTATTTGCATAAAATC  1098
      ||| ||||||||| ||   ||||||||||||||||   |||||| |||||
seq2  TCATTGAACTATTTTATACCTATCGTGTATTTGTG--ATTGCAT-AAATC  1088

seq1  TGA------TAGCACT  1108
      |||      |||||||
seq2  TGATGCCACTAGCACT  1104