BAC Information

Click to search

BAC

Clone NameB6Ng01-142G15
Chromosome3 (Build37)
Map Location 93,772,939 - 93,774,036
singlet/doubletsinglet
Overlap genenone
Upstream geneLce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5
Downstream geneEG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142G15.bB6Ng01-142G15.g
ACCDH940618DH940619
length1,0951,191
definitionDH940618|Mus musculus domesticus DNA, BAC clone: B6Ng01-142G15, 5' end.DH940619|Mus musculus domesticus DNA, BAC clone: B6Ng01-142G15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacaatggcctagggaataggtgggtttacctagaaagagttagg
gaattcccctgaaacaggtttcttcactaggcccaaagaaacagcataat
caggcatttactaagaacccctggtggtgggcttaacaatagactagcat
tacacctggctcccttcttagtggtagcagcctggtccctgcctactttt
gatgtatacattccttttgtattgtgtcactgtcactcaacagatgtatc
tcccttggtttcttgttgctcttctgtataaaaagtttgatgcttgactt
gaaaaattacactctgatactacacaatctctcctgtcgcttctgtctgt
tattcaccgactcctccacctgcaactagagactcattctacacagacag
agaccaaaaactcaataaagtcttagaaagaggtggcaaaaggtcaagag
acaaaacaacaggagattgtccccttagccttatgtaacttagtttgagt
tggaattaattcagtatttcaaccaaaacctgaggtttaggcccaaataa
gggttctttaaaatattttccatacttaacgaattcttgaaaaactaaaa
agatccttttatttttctttaatataagtaactagaaaaggacagtgcca
agataaaaaagctaaattagattaaaaattaaaagcaaggccaagcatga
tgacctttaattccagcactcgggaggcagaggaaggtaaatctctgagt
ttgaggccagcctgatctagagaatgagttcctggacagctggaccctgt
cttgctcatcttctgatcaagccagaggagagcatggttcttgacagcac
tctgcaatcaaaggtggcattatcctgtgctggtggacagtgtgccataa
agtggctgatcttgatgggctcatccaggtagacatgacgctcctgaatg
ggtgccactttagcaacacgtgaagatggctgagctgacgtgtcgggggt
tctggaacaggacatgaggagctcctcgggttgatgccttcacaagccga
ccctccattccacaacatttaatcaaactcactttatctaagcat
gaattctatgcatctcgacctttcgctgatgaaaggcttctccacctgga
tttcctctgcattttcctactttaaggagagggtgggggtaggcttgatt
gcaatgatcctatgcggtggagtgttgcttttgctctggatggtctgtaa
actcaaagcccaaacaaaaagggacaagatggtaatagcccaagcacttg
cagcattagaacatggtacctcccctgatatatggttatctatacttaag
caataagtcgctggccactcagttcttgcactgcaataggctcgtctcat
tgcacaggatagagtgagtgtgcttcagcagcccaatagagttgcatggc
taagcactgcagtagaaaggctctgcggcataatatgagcctgttcgagg
gagacatgtcatcttgtatgaagattgagtgtccaagtgtcctttccaca
ggaaaaacgacatgggagcggaccaagacccctccgcgtgacgagcctgg
gagaaggttttgtgtaatgcccctatttttgcacactggggatttgacct
ctatctccactctcagtactgggtggcctgttgccttttaaataaaagaa
aagggggagatgtgaggagctgcccttgcaatcgccattacaagatggcg
ctgacatccggtgttctaactgggtaaacaagtagtctgcgcatttgctg
gggtatttttccattccttgtgccctgcctgtcccgtggcatcatctggg
ctgatggtgagcaaccagtcagggtgaaacacgtctccaaccgctcttcg
tggcctatttaaggaccgagtttcctgtgttctgggtctcctccccagaa
gctgatcatcttctctcgagatgcattaaagctttgctgcagaaggatcc
gagtgtgtcctgtgtgtgtgtctcgcggcgagactcttatcacacaagac
acccttaggttgagtttcttggattgtcctatagttgcttaacaatatat
gcttaatcgaccttacagaaaaacctcactttcctacttgattgatggaa
gttgctggagtaaagctcggctgcattgagctttaaggtaagaacagtgc
cttgaccatgaaccgaaaacttcaacgtggaagtccagtacccacgtatt
acggagtctactgatccgagacagagcaggaccccgagtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93772939_93774036
seq2: B6Ng01-142G15.b_61_1140 (reverse)

seq1  ATGCTTAGATAAAGTGAAGTTTGATTTAAAAATGTTGTGGGAATGGGGGT  50
      |||||||||||||||| |||||||||   ||||||||| ||||||| || 
seq2  ATGCTTAGATAAAGTG-AGTTTGATT---AAATGTTGT-GGAATGGAGG-  44

seq1  GTCGGCTTGTGAAGTGCATTCAAACCCGGAGGAGCTCCTCATTGTCCCTG  100
      |||||||||||||| ||| ||||  || ||||||||||||| ||| ||||
seq2  GTCGGCTTGTGAAG-GCA-TCAA--CCCGAGGAGCTCCTCA-TGT-CCTG  88

seq1  GTCCAGAACCCCCCGACACGGTCAGCCTCAGCCATCTTCACGTGTTGCCT  150
       ||||||| |||||||||| ||||| ||||||||||||||||||||| ||
seq2  TTCCAGAA-CCCCCGACAC-GTCAG-CTCAGCCATCTTCACGTGTTG-CT  134

seq1  AAAGTGGCACCCATTTCAGGAGCGTCATGTCTACCTGGATGAGCCCATCA  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGCACCCA-TTCAGGAGCGTCATGTCTACCTGGATGAGCCCATCA  183

seq1  AGATCAGCCACTTTATGGCACACTGTCCACCAGCACAGGATAATGCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGCCACTTTATGGCACACTGTCCACCAGCACAGGATAATGCCACC  233

seq1  TTTGATTGCAGAGTGCTGTCAAGGAACCATGCTCTCCTCTGGCTTGATCA  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTGATTGCAGAGTGCTGTCAA-GAACCATGCTCTCCTCTGGCTTGATCA  282

seq1  GAAGATGAGCAAGACAGGGTCCAGCTGTCCAGGAACTCATTCTCTAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGAGCAAGACAGGGTCCAGCTGTCCAGGAACTCATTCTCTAGATC  332

seq1  AGGCTGGCCTCAAACTCAGAGATTTACCTTCCTCTGCCTCCCGAGTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTCAAACTCAGAGATTTACCTTCCTCTGCCTCCCGAGTGCTG  382

seq1  GAATTAAAGGTCATCATGCTTGGCCTTGCTTTTAATTTTTAATCTAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAGGTCATCATGCTTGGCCTTGCTTTTAATTTTTAATCTAATTT  432

seq1  AGCTTTTTTATCTTGGCACTGTCCTTTTCTAGTTACTTATATTAAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTTATCTTGGCACTGTCCTTTTCTAGTTACTTATATTAAAGAAA  482

seq1  AATAAAAGGATCTTTTTAGTTTTTCAAGAATTCGTTAAGTATGGAAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGGATCTTTTTAGTTTTTCAAGAATTCGTTAAGTATGGAAAATA  532

seq1  TTTTAAAGAACCCTTATTTGGGCCTAAACCTCAGGTTTTGGTTGAAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGAACCCTTATTTGGGCCTAAACCTCAGGTTTTGGTTGAAATAC  582

seq1  TGAATTAATTCCAACTCAAACTAAGTTACATAAGGCTAAGGGGACAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAATTCCAACTCAAACTAAGTTACATAAGGCTAAGGGGACAATCT  632

seq1  CCTGTTGTTTTGTCTCTTGACCTTTTGCCACCTCTTTCTAAGACTTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGTTTTGTCTCTTGACCTTTTGCCACCTCTTTCTAAGACTTTATT  682

seq1  GAGTTTTTGGTCTCTGTCTGTGTAGAATGAGTCTCTAGTTGCAGGTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTTGGTCTCTGTCTGTGTAGAATGAGTCTCTAGTTGCAGGTGGAG  732

seq1  GAGTCGGTGAATAACAGACAGAAGCGACAGGAGAGATTGTGTAGTATCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGGTGAATAACAGACAGAAGCGACAGGAGAGATTGTGTAGTATCAG  782

seq1  AGTGTAATTTTTCAAGTCAAGCATCAAACTTTTTATACAGAAGAGCAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAATTTTTCAAGTCAAGCATCAAACTTTTTATACAGAAGAGCAACA  832

seq1  AGAAACCAAGGGAGATACATCTGTTGAGTGACAGTGACACAATACAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAAGGGAGATACATCTGTTGAGTGACAGTGACACAATACAAAAG  882

seq1  GAATGTATACATCAAAAGTAGGCAGGGACCAGGCTGCTACCACTAAGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATACATCAAAAGTAGGCAGGGACCAGGCTGCTACCACTAAGAAG  932

seq1  GGAGCCAGGTGTAATGCTAGTCTATTGTTAAGCCCACCACCAGGGGTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGGTGTAATGCTAGTCTATTGTTAAGCCCACCACCAGGGGTTCT  982

seq1  TAGTAAATGCCTGATTATGCTGTTTCTTTGGGCCTAGTGAAGAAACCTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATGCCTGATTATGCTGTTTCTTTGGGCCTAGTGAAGAAACCTGT  1032

seq1  TTCAGGGGAATTCCCTAACTCTTTCTAGGTAAACCCACCTATTCCCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGAATTCCCTAACTCTTTCTAGGTAAACCCACCTATTCCCTA  1080