BAC Information

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BAC

Clone NameB6Ng01-142I06
Chromosome3 (Build37)
Map Location 15,515,606 - 15,516,708
singlet/doubletsinglet
Overlap geneLOC668101
Upstream geneLOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864, Sirpb1
Downstream geneLOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142I06.bB6Ng01-142I06.g
ACCDH940696DH940697
length1,2351,088
definitionDH940696|Mus musculus domesticus DNA, BAC clone: B6Ng01-142I06, 5' end.DH940697|Mus musculus domesticus DNA, BAC clone: B6Ng01-142I06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacatggtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaccatccagtggaagaaagacagcattttcaacaatggtgctggca
caactggttgttatcatgtagaagatgcgaatcgatccatactttctcct
tgtactacgtcaatctaagtggatcagaacttcacataaaacagagaaac
tgaaacttatagaggagaaagtggggaaagcttgaagattgggcacagga
aattcctgaaccgaacagcattgcttgtgctgtagatcgagaatgacaaa
tggaacttatgaatctcaaagttctgcaggcaagaactgtctagacaaag
accccacgattgggaagacttacctatcctaactc
gaattcatacaggagaaagaaccttacaaatgtgaatgtgacgtgtgttt
tatcctaaatttcaatcgatcttcattagagaattcatacaagagagaag
ccttacaaatataatgaatgtgacaaatacttcagccaaaaacaatctca
gctcttatcagagaatgcctacagtaggcactttcacaaatgaagtgaat
gagaaaaacccgtttccaaggaagatcatcttagaattcatcagagacta
tatatcggagaaggaaattataaatgtagtaaatgttcaaatccttcagt
gttcgttcaccatttaaaatacatgaaagaatgcattcaggattaaaaaa
aaaaaacttatgaatttgatatatgaggaaaggtctttacccaaatctca
gacctaagaaaatacctggttatttatattcagaaaaaagtgtccactgg
aaaaactatggcatgtgctttataccagtggtattattggcaacacttga
agctccacactagagaattattatatatgcgaggaagttgggaaaacatt
taaataatcctcaaattttaggagcaacccagggtttatgctcagagaaa
ctgaaaatgcagcaatgaaggaaatctttcattaaaagtttttacttgtt
cacttttaaatatgtcatgatggagaagctaaaagaatatggagttgtat
aaattttcctggagactgaaatgatctatttcaaaaagaagctatgaaat
acatgcctcaaaatagctatgaaactgacagcattctgtatgtttaactc
aaatgaacatactccaattatacttcttaaaagaggatttgacaaactga
gccacaaagataggatgctctttatcctgttcagatgcctacagatagcg
gtttgcttccaatgtccgctacttattatctctttcttatgctggtttag
tttaggatagcattgtctttgagtcccttgtgctctcattactactgctt
cccctagtcctgtttgtactcataaatctcactgggtttaacagttggaa
aaaaaaaaaaggaattggaggaggatctcaggtgcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_15515606_15516708
seq2: B6Ng01-142I06.g_67_1154

seq1  GAATTCATACAGGAGAAAGAACCTTACAAATGTGAATGTGACGTGTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGGAGAAAGAACCTTACAAATGTGAATGTGACGTGTGTTT  50

seq1  TATCCTAAATTTCAATCGATCTTCATTAGAGAATTCATACAAGAGAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAAATTTCAATCGATCTTCATTAGAGAATTCATACAAGAGAGAAG  100

seq1  CCTTACAAATATAATGAATGTGACAAATACTTCAGCCAAAAACAATCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAAATATAATGAATGTGACAAATACTTCAGCCAAAAACAATCTCA  150

seq1  GCTCTTATCAGAGAATGCCTACAGTAGGCACTTTCACAAATGAAGTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTATCAGAGAATGCCTACAGTAGGCACTTTCACAAATGAAGTGAAT  200

seq1  GAGAAAAACCCGTTTCCAAGGAAGATCATCTTAGAATTCATCAGAGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAACCCGTTTCCAAGGAAGATCATCTTAGAATTCATCAGAGACTA  250

seq1  TATATCGGAGAAGGAAATTATAAATGTAGTAAATGTTCAAATCCTTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCGGAGAAGGAAATTATAAATGTAGTAAATGTTCAAATCCTTCAGT  300

seq1  GTTCGTTCACCATTTAAAATACATGAAAGAATGCATTCAGGATTAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGTTCACCATTTAAAATACATGAAAGAATGCATTCAGGATTAAAAAA  350

seq1  AAAAAACTTATGAATTTGATATATGAGGAAAGGTCTTTACCCAAATCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTATGAATTTGATATATGAGGAAAGGTCTTTACCCAAATCTCA  400

seq1  GACCTAAGAAAATACCTGGTTATTTATATTCAGAAAAAAGTGTCCACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAAGAAAATACCTGGTTATTTATATTCAGAAAAAAGTGTCCACTGG  450

seq1  AAAAACTATGGCATGTGCTTTATACCAGTGGTATTATTGGCAACACTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTATGGCATGTGCTTTATACCAGTGGTATTATTGGCAACACTTGA  500

seq1  AGCTCCACACTAGAGAATTATTATATATGCGAGGAAGTTGGGAAAACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACACTAGAGAATTATTATATATGCGAGGAAGTTGGGAAAACATT  550

seq1  TAAATAATCCTCAAATTTTAGGAGCAACCCAGGGTTTATGCTCAGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATCCTCAAATTTTAGGAGCAACCCAGGGTTTATGCTCAGAGAAA  600

seq1  CTGAAAATGCAGCAATGAAGGAAATCTTTCATTAAAAGTTTTTACTTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATGCAGCAATGAAGGAAATCTTTCATTAAAAGTTTTTACTTGTT  650

seq1  CACTTTTAAATATGTCATGATGGAGAAGCTAAAAGAATATGGAGTTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTAAATATGTCATGATGGAGAAGCTAAAAGAATATGGAGTTGTAT  700

seq1  AAATTTTCCTGGAGACTGAAATGATCTATTTCAAAAAGAAGCTATGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCCTGGAGACTGAAATGATCTATTTCAAAAAGAAGCTATGAAAT  750

seq1  ACATGCCTCAAAATAGCTATGAAACTGACAGCATTCTGTATGTTTAACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCTCAAAATAGCTATGAAACTGACAGCATTCTGTATGTTTAACTC  800

seq1  AAATGAACATACTCCAATTATACTTCTTAAAAGAGGATTTGACAAACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACATACTCCAATTATACTTCTTAAAAGAGGATTTGACAAACTGA  850

seq1  GCCACAAAGATAAGATGCTCTTTATCCTGTTCAGATGCCTACAGATAAGC  900
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  GCCACAAAGATAGGATGCTCTTTATCCTGTTCAGATGCCTACAGAT-AGC  899

seq1  GGTTTGCTTCCAATGTCCGCTACTTATTATCTCTTTCTTATGCTGGTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGTTTGCTTCCAATGTCCGCTACTTATTATCTCTTTCTTATGCTGGTTT-  948

seq1  AAGTTTTAGGATAGCAATTGTCTTTGAGTCCCTTGTGCTCTCATTTACTA  1000
       || ||||||||||| ||||||||||||||||||||||||||| ||||| 
seq2  -AG-TTTAGGATAGC-ATTGTCTTTGAGTCCCTTGTGCTCTCA-TTACT-  993

seq1  ACTGCTTCCCCTAAGTCCTGTATGTAACTCCAATAAATCTCACT-GGTTT  1049
      |||||||||||| |||||||| ||| ||||  |||||||||||| |||||
seq2  ACTGCTTCCCCT-AGTCCTGTTTGT-ACTC--ATAAATCTCACTGGGTTT  1039

seq1  AACAAGTTGAAAAAAAAAAAAAAAAGAAATGGAAGAGAGAATCTCAGGTG  1099
      ||| |||||   |||||||||||| ||| ||||   ||| ||||||||||
seq2  AAC-AGTTG--GAAAAAAAAAAAAGGAATTGGA--GGAGGATCTCAGGTG  1084

seq1  CAGA  1103
      ||||
seq2  CAGA  1088