BAC Information

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BAC

Clone NameB6Ng01-142J05
Chromosome3 (Build37)
Map Location 24,102,396 - 24,202,796
singlet/doubletdoublet
Overlap geneEG635702
Upstream geneLOC100039548
Downstream geneEG665189, LOC100039592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142J05.bB6Ng01-142J05.g
ACCDH940737DH940738
length1,1501,090
definitionDH940737|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J05, 5' end.DH940738|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,102,396 - 24,103,232)(24,201,689 - 24,202,796)
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaaaatcctttcccaatctgttggtggcctt
tttgtctcattgacggtgtcttttgccttatagaagccttgcagtttcat
gaggtcccatttgtcaattcttgatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatcttcaaggcttttctctact
ttctcctctataagcttcagtgtctctggttttatgtggagctccttgat
ccacttagatttgaccttagtacaaggagatagaaatggatcaattcgca
ttcttctacctgataaccaccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactgggtggttttagctcccttgtcgaagatcaagtg
acaataggtgtgtgggttcatttctgggtcttcaattctattccattggt
ctacttgtctgtcgctataccagtaccatgcagtttttatcacaattggt
ctgtagtacagatttaggttaggcatggtgattccaccagaggttctttt
attcttgagaagagtttttgctaccctagcttttttgtcattccagatga
atttgcagattgctctttctaattcgttgaagagtcgagttggaattttg
atggggtttgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgattactctttagagatgtaaagtaaaacggcaaactgacc
ataaactaaaatcatatcattgttagccaaaatcaagtgattttatttaa
tttcaaatatttctattacagtattaggaaaatgacagcacaaaaaaacc
ctattgcaaaatacatttgtaatatttctgttaaaaaatagtctacggat
attcttttagcattatgattaaagattagcaacatatgtatgaacaaatg
gagtcatgacagttttatcagcctcttataatacttcagtgtctaggaac
atatatttgtttcacaggatggatagtgtatagacctacagctttaatga

gaattccttaatgagaacatttgctgagtatcagggaactatagagctct
gatgaggacagcacttttaattctttttgtagtaagaactttcaaaagca
tgggtgacctggcttaaatggctgaggtttaataattctaacttttgtcc
tagaatgatattgacttgtaaaacttggcttgcatagaattcagagagta
gcagagtgtgaatttctctgagacatgagtctggtttctggatcaaagta
tgagtgcagggttgggatgagagggcagctgcaggtggggtggcacagag
ctgatggccagagtttcagtgccacctgtcagtttgatgatcttgatgac
tttgaaggatgctcttctgtgctctacttttctgattaacccacttacta
ccatgctgttcacctgtctttctggatgaactgctgtgtcttgtcctatc
tttgatacagaatcttaagcattccagaggaaactcttaatttaagccat
cagtacaaccagaggggagtgcctttgacaactaaagttctgttttatat
atatattaccttccagcacaaaagcttgctgtttggagaagcactgagca
tagttcaaggaaagatccccagctaaaaatagataaacaagtgaagtcag
acatgagagaatcttttcaaatagttcataagacagcgagacactatttc
atactttctttagaaattgaagtgtttgaatgatgaacccatgctattga
tctgagacagagaagctcttgccaagtaaacatttgtagatagaatgtat
ctgtgttgtaaaaaaaaataaagttttataataatatagaaatttcaaac
atttatatagcaaatttagataatattgtttatatatagctttgacatct
gtcttcactgaatccaaaacattaaagccagtaaagtacatgacatgtat
ttatagataaatgctactctgagcattctaagactacagatttagatgga
taaaaatatgagtaatgaaataatttaatcgttgtatcaatatcattccg
aacaattaatatgcatatgataaatgttaagttagttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_24102396_24103232
seq2: B6Ng01-142J05.b_361_1194

seq1  TCAGTGTCTCTGGTTTTATGTGGAGCTCCTTGATCCACTTAGATTTGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCTCTGGTTTTATGTGGAGCTCCTTGATCCACTTAGATTTGACC  50

seq1  TTAGTACAAGGAGATAGAAATGGATCAATTCGCATTCTTCTACCTGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACAAGGAGATAGAAATGGATCAATTCGCATTCTTCTACCTGATAA  100

seq1  CCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACT  150

seq1  GGGTGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACAATAGGTGTGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACAATAGGTGTGTGGG  200

seq1  TTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCGCT  250

seq1  ATACCAGTACCATGCAGTTTTTATCACAATTGGTCTGTAGTACAGATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGTACCATGCAGTTTTTATCACAATTGGTCTGTAGTACAGATTTA  300

seq1  GGTTAGGCATGGTGATTCCACCAGAGGTTCTTTTATTCTTGAGAAGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGCATGGTGATTCCACCAGAGGTTCTTTTATTCTTGAGAAGAGTT  350

seq1  TTTGCTACCCTAGCTTTTTTGTCATTCCAGATGAATTTGCAGATTGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTACCCTAGCTTTTTTGTCATTCCAGATGAATTTGCAGATTGCTCT  400

seq1  TTCTAATTCGTTGAAGAGTCGAGTTGGAATTTTGATGGGGTTTGCATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTCGTTGAAGAGTCGAGTTGGAATTTTGATGGGGTTTGCATTGA  450

seq1  ATCTGTAGATTGCTTTTGGCAAGATAGCCATTTTTACAATGTTGATTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAGATTGCTTTTGGCAAGATAGCCATTTTTACAATGTTGATTACT  500

seq1  CTTTAGAGATGTAAAGTAAAACGGCAAACTGACCATAAACTAAAATCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAGATGTAAAGTAAAACGGCAAACTGACCATAAACTAAAATCATA  550

seq1  TCATTGTTAGCCAAAATCAAGTGATTTTATTTAATTTCAAATATTTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTAGCCAAAATCAAGTGATTTTATTTAATTTCAAATATTTCTAT  600

seq1  TACAGTATTAGGAAAATGACAAGCACAAAAAAAACCCTATTGCAAAATAC  650
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  TACAGTATTAGGAAAATGAC-AGCAC-AAAAAAACCCTATTGCAAAATAC  648

seq1  ATTTGTAATATTTCTTGTTAAAAAATAGTCTACGGATATTCTTTTAGCAT  700
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  ATTTGTAATATTTC-TGTTAAAAAATAGTCTACGGATATTCTTTTAGCA-  696

seq1  TTATGATTTAAAAGATTAGCAACATATGTTATGAACATATGGAGTCATGA  750
      ||||||||  |||||||||||||||||| |||||||| ||||||||||||
seq2  TTATGATT--AAAGATTAGCAACATATG-TATGAACAAATGGAGTCATGA  743

seq1  CAG-TCTATCAG-CTC-TATAATACTTCAGTGTCTAAGAACATATA-TTG  796
      ||| | |||||| ||| ||||||||||||||||||| ||||||||| |||
seq2  CAGTTTTATCAGCCTCTTATAATACTTCAGTGTCTAGGAACATATATTTG  793

seq1  TATCACAGGATGGATAGGTGATAGA-CTACAAGTTTTAATGA  837
      | |||||||||||||||   ||||| |||| || ||||||||
seq2  TTTCACAGGATGGATAGTGTATAGACCTAC-AGCTTTAATGA  834

seq1: chr3_24201689_24202796
seq2: B6Ng01-142J05.g_66_1155 (reverse)

seq1  TATAAATTAACTAACATTTAATAATTATGCATATTTATATGTTTGAGAAA  50
      ||||| | |  |||||||||  |  |||||||||| || ||||   | ||
seq2  TATAACTAACTTAACATTTATCA--TATGCATATTAAT-TGTT--CGGAA  45

seq1  TGATATTGGAATACAACCAAATAAATTATTTCTTAACTCATATTTTTAAC  100
      ||||||||  |||||| | | ||||||||||| | |||||||||||| | 
seq2  TGATATTG--ATACAA-CGATTAAATTATTTCATTACTCATATTTTT-AT  91

seq1  CCAACTAAAATCTGTTAGTCTTAGAATTGCTCAGAGAAGCATTTATCTAT  150
      ||| || ||||||| ||||||||||| ||||||||| |||||||||||||
seq2  CCATCT-AAATCTG-TAGTCTTAGAA-TGCTCAGAGTAGCATTTATCTAT  138

seq1  AAATACATGTCATGTACTTTACTGGCTTTAATGTTTTGGAATTCAGTGAA  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAATACATGTCATGTACTTTACTGGCTTTAATGTTTTGG-ATTCAGTGAA  187

seq1  GAACAGATGTCAAAGCTATATATTAAACAATATTATCTAAATTTGCTATA  250
      | |||||||||||||||||||| |||||||||||||||||||||||||||
seq2  G-ACAGATGTCAAAGCTATATA-TAAACAATATTATCTAAATTTGCTATA  235

seq1  TAAAGGTTTGAAAATTTCTATTATTTTTATAAAACTTTATTTTTTTTTAC  300
      |||| ||||| ||||||||| |||| ||||||||||||||||||||||||
seq2  TAAATGTTTG-AAATTTCTA-TATTATTATAAAACTTTATTTTTTTTTAC  283

seq1  AACACAGATACATTGCTATCTACAAATGTTTACTTGGCAAGAGCTTCTCT  350
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACACAGATACATT-CTATCTACAAATGTTTACTTGGCAAGAGCTTCTCT  332

seq1  GTCTCAGACCAATAGCATGGGTTCATCATTCAAACACTTCAATTTCTAAA  400
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGATCAATAGCATGGGTTCATCATTCAAACACTTCAATTTCTAAA  382

seq1  GAAAGTATGAAATAGTGTCCTGCTGTCTTATGAACTATTTGAAAAGATTT  450
      |||||||||||||||||||  |||||||||||||||||||||||||||| 
seq2  GAAAGTATGAAATAGTGTCTCGCTGTCTTATGAACTATTTGAAAAGATTC  432

seq1  TCTCATGTCTGACTTCACTTGTTTATCTATTTTTAGCTGGGGATCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGTCTGACTTCACTTGTTTATCTATTTTTAGCTGGGGATCTTTCC  482

seq1  TTGAACTATGCTCAGTGCTTCTCCAAACAGCAAGCTTTTGTGCTGGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTATGCTCAGTGCTTCTCCAAACAGCAAGCTTTTGTGCTGGAAGG  532

seq1  TAATATATATATAAAACAGAACTTTAGTTGTCAAAGGCACTCCCCTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATATATAAAACAGAACTTTAGTTGTCAAAGGCACTCCCCTCTGG  582

seq1  TTGTACTGATGGCTTAAATTAAGAGTTTCCTCTGGAATGCTTAAGATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTGATGGCTTAAATTAAGAGTTTCCTCTGGAATGCTTAAGATTCT  632

seq1  GTATCAAAGATAGGACAAGACACAGCAGTTCATCCAGAAAGACAGGTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAAAGATAGGACAAGACACAGCAGTTCATCCAGAAAGACAGGTGAA  682

seq1  CAGCATGGTAGTAAGTGGGTTAATCAGAAAAGTAGAGCACAGAAGAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGGTAGTAAGTGGGTTAATCAGAAAAGTAGAGCACAGAAGAGCAT  732

seq1  CCTTCAAAGTCATCAAGATCATCAAACTGACAGGTGGCACTGAAACTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAAGTCATCAAGATCATCAAACTGACAGGTGGCACTGAAACTCTG  782

seq1  GCCATCAGCTCTGTGCCACCCCACCTGCAGCTGCCCTCTCATCCCAACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAGCTCTGTGCCACCCCACCTGCAGCTGCCCTCTCATCCCAACCC  832

seq1  TGCACTCATACTTTGATCCAGAAACCAGACTCATGTCTCAGAGAAATTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCATACTTTGATCCAGAAACCAGACTCATGTCTCAGAGAAATTCA  882

seq1  CACTCTGCTACTCTCTGAATTCTATGCAAGCCAAGTTTTACAAGTCAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGCTACTCTCTGAATTCTATGCAAGCCAAGTTTTACAAGTCAATA  932

seq1  TCATTCTAGGACAAAAGTTAGAATTATTAAACCTCAGCCATTTAAGCCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTAGGACAAAAGTTAGAATTATTAAACCTCAGCCATTTAAGCCAG  982

seq1  GTCACCCATGCTTTTGAAAGTTCTTACTACAAAAAGAATTAAAAGTGCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCATGCTTTTGAAAGTTCTTACTACAAAAAGAATTAAAAGTGCTG  1032

seq1  TCCTCATCAGAGCTCTATAGTTCCCTGATACTCAGCAAATGTTCTCATTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATCAGAGCTCTATAGTTCCCTGATACTCAGCAAATGTTCTCATTA  1082

seq1  AGGAATTC  1108
      ||||||||
seq2  AGGAATTC  1090