BAC Information

Click to search

BAC

Clone NameB6Ng01-142J20
Chromosome3 (Build37)
Map Location 118,160,859 - 118,161,945
singlet/doubletsinglet
Overlap genenone
Upstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142J20.bB6Ng01-142J20.g
ACCDH940763DH940764
length1,1771,071
definitionDH940763|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J20, 5' end.DH940764|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccaaatgatggagaagcacctgaaaaattg
ttcaacatccttaatcatcatggaaatgcaaatcaaaacaacccagagat
tccacatcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agattctggcatggatgtggagaaagaggaacactcctcattgttggtgg
gattgcaagcttgtacaaccactctggaaatcaggctggcagttcctcag
aaaattggacatagtactaccataggatcccgcaatacctctcccgggca
tatatccagaagaggttccaactggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaa
tggatggacctggagggcatcgtcctgagcgaggtaacccaatcacaaaa
gaactcacagaatatgtactcactgataagtggatgttagcccagaaact
tagaatacccaagatataagatacaatttgctaaacgcatgaaactcaag
aagaacgaagaccaaagtgtggacactttgccccttcttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttgggagctgaggcg
aaatgttggaccatctagagactgccatatccagggatccatcccataat
tagcttccaaatgctgacaccattgcatacactagcaagattttgctgaa
aggacccagatatagctgtctcttgtgagactatgcccgggccctaacaa
acacagaaatggatgctcacatcactattgggatggatcacaggcctcca
atggagagctagagaagtacccaagaagctaaagggatctgtatcctaca
gtggacacatatgactaccagtatctccccccccccaccccccgagcttg
gtgtctctagctgcatttgatcagaagatgctagtcgtcatcagtgtaag
agaggtccattgtcatgcaacttatatgctcagtacagggacgccaggct
agaataggatgggtgtgtggtggggaa
gaattccatacaaaattaatttatctgctcactaataactaacttaggat
ttcatttttctacaaaatggtaacaacacctgctttattcaaacttaaat
agtactctatgagaatgataccccatgaatagaaatagtcatgcttggcc
ctcagttacattataataattcaggtcattacatagctgtcattctgtct
atacagataacaactaaatatcatttcagtatcatttgatatatgtatag
agtttaatttgggaataaatatatgactactatgaaaattaacagaattc
atggctacttttaatgcattaaagttgtagaacgaacattttgcaaaata
tattcatcaagaattgcttagatagctagcaagttagacgtgagattgat
ctcccaaatccacgttaaaaccaaaaccaaaaaccaaaaaccaaaaccaa
aaccaagaccaaaacaacaaaaatgaacaaacaggtgtgcaaggtcatca
ttcttgtactctgaccaacacatatacacatgcacaccagtgaacaagca
cagaacacatgcacataatgagttgacataaaataatcatttaacaataa
ggttaaattatggtcctcttatggagataaagctttacgtcaatgaggag
tagaaaacataaaaaaaaaaattatgagccaatttcccatttttttgcat
tagaaagaaagaagaaataattcacaaacatttcgtacaagcttagctga
caactattttcatatttcacccaggacttccttcttaaggttttgatcaa
gttagacgcactgctcagaagacaaatggcatcacaggacggtattatga
atcttagttaaagattatgtagattgctctggaaagtagtgattcatcaa
acatatgaagatgtcattgacattagatccacaggaccgatgtgtgtctt
tctgtgtactgtactccttatgatggctttcttaggtcccatcacatcct
atgtaattgtgatcatgagctttctttctcatagaagttgtctgaataca
catgttctaatacctatcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118160859_118161945
seq2: B6Ng01-142J20.g_68_1138

seq1  GAATTCCATACAAAATTAATTTATCTGCTCACTAATAACTAACTTAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACAAAATTAATTTATCTGCTCACTAATAACTAACTTAGGAT  50

seq1  TTCATTTTTCTACAAAATGGTAACAACACCTGCTTTATTCAAACTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTCTACAAAATGGTAACAACACCTGCTTTATTCAAACTTAAAT  100

seq1  AGTACTCTATGAGAATGATACCCCATGAATAGAAATAGTCATGCTTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTCTATGAGAATGATACCCCATGAATAGAAATAGTCATGCTTGGCC  150

seq1  CTCAGTTACATTATAATAATTCAGGTCATTACATAGCTGTCATTCTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTACATTATAATAATTCAGGTCATTACATAGCTGTCATTCTGTCT  200

seq1  ATACAGATAACAACTAAATATCATTTCAGTATCATTTGATATATGTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGATAACAACTAAATATCATTTCAGTATCATTTGATATATGTATAG  250

seq1  AGTTTAATTTGGGAATAAATATATGACTACTATGAAAATTAACAGAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATTTGGGAATAAATATATGACTACTATGAAAATTAACAGAATTC  300

seq1  ATGGCTACTTTTAATGCATTAAAGTTGTAGAACGAACATTTTGCAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTACTTTTAATGCATTAAAGTTGTAGAACGAACATTTTGCAAAATA  350

seq1  TATTCATCAAGAATTGCTTAGATAGCTAGCAAGTTAGACGTGAGATTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATCAAGAATTGCTTAGATAGCTAGCAAGTTAGACGTGAGATTGAT  400

seq1  CTCCCAAATCCACGTTAAAACCAAAACCAAAAACCAAAAACCAAAACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAATCCACGTTAAAACCAAAACCAAAAACCAAAAACCAAAACCAA  450

seq1  AACCAAGACCAAAACAACAAAAATGAACAAACAGGTGTGCAAGGTCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGACCAAAACAACAAAAATGAACAAACAGGTGTGCAAGGTCATCA  500

seq1  TTCTTGTACTCTGACCAACACATATACACATGCACACCAGTGAACAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTACTCTGACCAACACATATACACATGCACACCAGTGAACAAGCA  550

seq1  CAGAACACATGCACATAATGAGTTGACATAAAATAATCATTTAACAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACATGCACATAATGAGTTGACATAAAATAATCATTTAACAATAA  600

seq1  GGTTAAATTATGGTCCTCTTATGGAGATAAAGCTTTACGTCAATGAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAATTATGGTCCTCTTATGGAGATAAAGCTTTACGTCAATGAGGAG  650

seq1  TAGAAAACATAAAAAAAAAAATTATGAGCCAATTTCCCATTTTTTTGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACATAAAAAAAAAAATTATGAGCCAATTTCCCATTTTTTTGCAT  700

seq1  TAGAAAGAAAGAAGAAATAATTCACAAACATTTCGTACAAGCTTAGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGAAAGAAGAAATAATTCACAAACATTTCGTACAAGCTTAGCTGA  750

seq1  CAACTATTTTCATATTTCACCCAGGACTTCCTTCTTAAGGTTTTGATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATTTTCATATTTCACCCAGGACTTCCTTCTTAAGGTTTTGATCAA  800

seq1  GTTAGACGCACTGCTCAGAAGACAAATGGCATCACAGGACAGGTATTATG  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTAGACGCACTGCTCAGAAGACAAATGGCATCACAGGAC-GGTATTATG  849

seq1  AATCTTAGTTAAAGATTATGTAGATTGCTCTGGAAAAGTAGTGATTCATC  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATCTTAGTTAAAGATTATGTAGATTGCTCTGG-AAAGTAGTGATTCATC  898

seq1  AAACAATATGAAGATGTCATTGACATTAGATCCCACAGGACCGATGTGTG  950
      |||| |||||||||||||||||||||||||| ||||||||||||||||| 
seq2  AAAC-ATATGAAGATGTCATTGACATTAGAT-CCACAGGACCGATGTGT-  945

seq1  GTCTTTCTGTGGTACTGTACTCCTTATGATGGCTTTCTTAAGGTCCCCAT  1000
      |||||||||| |||||||||||||||||||||||||||| |||| |||||
seq2  GTCTTTCTGT-GTACTGTACTCCTTATGATGGCTTTCTT-AGGT-CCCAT  992

seq1  CACATCCTATTGTAATTGTTGATTCATGAGCTTTCTTTCTCACTAGAAGT  1050
      ||||||||| |||||||| ||| ||||||||||||||||||| |||||||
seq2  CACATCCTA-TGTAATTG-TGA-TCATGAGCTTTCTTTCTCA-TAGAAGT  1038

seq1  TGTCTGAGTACACATGGTCCTTAAATTACCTATCATC  1087
      ||||||| |||||||| ||  |||  |||||||||||
seq2  TGTCTGAATACACATGTTC--TAA--TACCTATCATC  1071