BAC Information

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BAC

Clone NameB6Ng01-142K11
Chromosome3 (Build37)
Map Location 81,863,436 - 81,988,020
singlet/doubletdoublet
Overlap geneGucy1b3, Gucy1a3
Upstream genePdgfc, LOC229443, LOC100041901, Ctso, Tdo2, Accn5
Downstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142K11.bB6Ng01-142K11.g
ACCDH940793DH940794
length689947
definitionDH940793|Mus musculus domesticus DNA, BAC clone: B6Ng01-142K11, 5' end.DH940794|Mus musculus domesticus DNA, BAC clone: B6Ng01-142K11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,987,332 - 81,988,020)(81,863,436 - 81,864,235)
sequence
gaattcctaaaactattttgagatctcataaaatagggagaaaatgcaaa
ctctcttgccaagtctcacaaaataaatttgacatttttgacatgactcg
ttctccctttgaagaccagctctcagctaagggtcgagtcttttttaaac
aaggagaagcctatggaaatctgggctgcgtgaaagccattttgagaaag
actagtggttttcaccctgctcattggatatgatcggagagttggatcta
agttggtctttgctgacctctgtcctgatgatcagtaaggcactggctct
tccatccactcaggcatttttgtttatgagcacatgaggagactgcttac
agcaccaagtttcagcaagttcttctgaagctctttcagttgacaacctt
ctcatatttttattacaaatgagtcccaggagacttgtccagggccacca
gtaggagtttctgggttttcaggcaaagccaaggtatctgcttcctataa
cttagactcccaacccacagataatgccttcttttcaaacagcctgaacc
gtccagacaaaagtcaacatcattttcattgtacatttgaattctcagaa
atctcagctcatgctcatacctccacactccacagagtttgtaaaacaca
gcaggtgtgtgtgtgtgtgtggtgtgtatgtgtatgtgt
gaattccaggttcagtgggagaccctatcctggaatggaagatgaagcga
ctgcccaaaatgtgaagcatgaagtctagtccaaatagatacatctacaa
aattactacccaaggctcagggatcacttcagaagagggacaggaaggac
tgcaagatccagaggaataagagtttgctgtgagattatctttcctcaat
atgtcagaagctacactgacaaaatctcaccatcgtacctgcctaaacag
agcaggagtagagcaagaacgataccattagacatgttaatgtggatgga
tgggggaagtgcctgagagttcagccctggacaaagaagtacaggcaact
aagaatgcagagatcagaggatacagtgtgttccacagaagagcacacta
atagattatttaataacaaatcatcaaccttgaaaacacggacttacaag
taacattatatggggtgagcaggttgtgcttgtgtaatgaggaataaata
tattacatatattcctaaatacatacacaaatgataaacaaaaatgaggc
catgggttagaacaagagaggatggagtatatgttggaaggcctagagaa
aggaaatgtgatggagaaatgaaaaaattataatttcaaaaacttcttaa
tatataaaaataaagaacaattgacaaaaaaacctgaaactgtcttctgg
tttctcatgtgcacatgcatccaaacacacatgctgttctgtatatgcat
atacatacaatcacaaatacctttcatataaaaataaattaaagatatat
taatagtatgaacatattcacagttttaactgactttgataatataagat
atcatcatcccctcaaatttgccttaatttattattaaattgaaaatgtg
tgtgttgtgtgtgtggtgtttttctttaactcttactctggacccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81987332_81988020
seq2: B6Ng01-142K11.b_44_732 (reverse)

seq1  ACACATACACATACACACCACACACACACACACACCTGCTGTGTTTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACACATACACACCACACACACACACACACCTGCTGTGTTTTACA  50

seq1  AACTCTGTGGAGTGTGGAGGTATGAGCATGAGCTGAGATTTCTGAGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTGGAGTGTGGAGGTATGAGCATGAGCTGAGATTTCTGAGAATT  100

seq1  CAAATGTACAATGAAAATGATGTTGACTTTTGTCTGGACGGTTCAGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTACAATGAAAATGATGTTGACTTTTGTCTGGACGGTTCAGGCTG  150

seq1  TTTGAAAAGAAGGCATTATCTGTGGGTTGGGAGTCTAAGTTATAGGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAGAAGGCATTATCTGTGGGTTGGGAGTCTAAGTTATAGGAAGC  200

seq1  AGATACCTTGGCTTTGCCTGAAAACCCAGAAACTCCTACTGGTGGCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCTTGGCTTTGCCTGAAAACCCAGAAACTCCTACTGGTGGCCCTG  250

seq1  GACAAGTCTCCTGGGACTCATTTGTAATAAAAATATGAGAAGGTTGTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTCTCCTGGGACTCATTTGTAATAAAAATATGAGAAGGTTGTCAA  300

seq1  CTGAAAGAGCTTCAGAAGAACTTGCTGAAACTTGGTGCTGTAAGCAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAGCTTCAGAAGAACTTGCTGAAACTTGGTGCTGTAAGCAGTCT  350

seq1  CCTCATGTGCTCATAAACAAAAATGCCTGAGTGGATGGAAGAGCCAGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGTGCTCATAAACAAAAATGCCTGAGTGGATGGAAGAGCCAGTGC  400

seq1  CTTACTGATCATCAGGACAGAGGTCAGCAAAGACCAACTTAGATCCAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGATCATCAGGACAGAGGTCAGCAAAGACCAACTTAGATCCAACT  450

seq1  CTCCGATCATATCCAATGAGCAGGGTGAAAACCACTAGTCTTTCTCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGATCATATCCAATGAGCAGGGTGAAAACCACTAGTCTTTCTCAAAA  500

seq1  TGGCTTTCACGCAGCCCAGATTTCCATAGGCTTCTCCTTGTTTAAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTCACGCAGCCCAGATTTCCATAGGCTTCTCCTTGTTTAAAAAAG  550

seq1  ACTCGACCCTTAGCTGAGAGCTGGTCTTCAAAGGGAGAACGAGTCATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGACCCTTAGCTGAGAGCTGGTCTTCAAAGGGAGAACGAGTCATGTC  600

seq1  AAAAATGTCAAATTTATTTTGTGAGACTTGGCAAGAGAGTTTGCATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTCAAATTTATTTTGTGAGACTTGGCAAGAGAGTTTGCATTTTC  650

seq1  TCCCTATTTTATGAGATCTCAAAATAGTTTTAGGAATTC  689
      |||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATTTTATGAGATCTCAAAATAGTTTTAGGAATTC  689

seq1: chr3_81863436_81864235
seq2: B6Ng01-142K11.g_210_1014

seq1  GGAAGGACTGCAAGATCCAGAGGAATAAGAGTTTGCTGTGAGATTATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGACTGCAAGATCCAGAGGAATAAGAGTTTGCTGTGAGATTATCTT  50

seq1  TCCTCAATATGTCAGAAGCTACACTGACAAAATCTCACCATCGTACCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAATATGTCAGAAGCTACACTGACAAAATCTCACCATCGTACCTGC  100

seq1  CTAAACAGAGCAGGAGTAGAGCAAGAACGATACCATTAGACATGTTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGAGCAGGAGTAGAGCAAGAACGATACCATTAGACATGTTAATG  150

seq1  TGGATGGATGGGGGAAGTGCCTGAGAGTTCAGCCCTGGACAAAGAAGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGATGGGGGAAGTGCCTGAGAGTTCAGCCCTGGACAAAGAAGTAC  200

seq1  AGGCAACTAAGAATGCAGAGATCAGAGGATACAGTGTGTTCCACAGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACTAAGAATGCAGAGATCAGAGGATACAGTGTGTTCCACAGAAGA  250

seq1  GCACACTAATAGATTATTTAATAACAAATCATCAACCTTGAAAACACGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTAATAGATTATTTAATAACAAATCATCAACCTTGAAAACACGGA  300

seq1  CTTACAAGTAACATTATATGGGGTGAGCAGGTTGTGCTTGTGTAATGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAGTAACATTATATGGGGTGAGCAGGTTGTGCTTGTGTAATGAGG  350

seq1  AATAAATATATTACATATATTCCTAAATACATACACAAATGATAAACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATATTACATATATTCCTAAATACATACACAAATGATAAACAAA  400

seq1  AATGAGGCCATGGGTTAGAACAAGAGAGGATGGAGTATATGTTGGAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGCCATGGGTTAGAACAAGAGAGGATGGAGTATATGTTGGAAGGC  450

seq1  CTAGAGAAAGGAAATGTGATGGAGAAATGAAAAAATTATAATTTCAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGGAAATGTGATGGAGAAATGAAAAAATTATAATTTCAAAAA  500

seq1  CTTCTTAATATATAAAAAT-AAGAACAATTGACAAAAAAACCTGAAACTG  549
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTCTTAATATATAAAAATAAAGAACAATTGACAAAAAAACCTGAAACTG  550

seq1  TCTTCTGGTTTCTCATGTGCACATGCATCCAAACACACATGCTGTTCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGTTTCTCATGTGCACATGCATCCAAACACACATGCTGTTCTGT  600

seq1  ATATGCATATACATACAATCACAAATACCTTTCATATAAAAATAAATTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATATACATACAATCACAAATACCTTTCATATAAAAATAAATTAA  650

seq1  AGATATATTAATAGTATGAACATATTCACAGTTTTAACTGACTTTGATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATATTAATAGTATGAACATATTCACAGTTTTAACTGACTTTGATAA  700

seq1  TATAAGATATCATCAT-CCCTCAAATTTGCCTTAATTTATTATTAAATTG  748
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TATAAGATATCATCATCCCCTCAAATTTGCCTTAATTTATTATTAAATTG  750

seq1  AAAATGTGTGTG-TGTGTGTGT-GTGTTTTTCTTTAGCTC-TACTCTGGA  795
      |||||||||||| ||||||||| ||||||||||||| ||| |||||||||
seq2  AAAATGTGTGTGTTGTGTGTGTGGTGTTTTTCTTTAACTCTTACTCTGGA  800

seq1  CCCAA  800
      |||||
seq2  CCCAA  805