BAC Information

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BAC

Clone NameB6Ng01-142L11
Chromosome10 (Build37)3 (Build37)
Map Location 109,662,868 - 109,663,17891,743,202 - 91,744,368
singlet/doubletsingletsinglet
Overlap geneLOC100042506
Upstream geneNav3, LOC100042497, LOC100042502
Downstream geneLOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142L11.bB6Ng01-142L11.g
ACCDH940841DH940842
length9751,140
definitionDH940841|Mus musculus domesticus DNA, BAC clone: B6Ng01-142L11, 5' end.DH940842|Mus musculus domesticus DNA, BAC clone: B6Ng01-142L11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,662,868 - 109,663,178)(91,743,202 - 91,744,368)
sequence
gaattctgtttagctctgcatcccaatttttaattgggttatttgttttt
ttggaggttagcttcttgagttctttatatattttggatattagccaact
actggatgtggggtagtgaagatttttttcccagtcttcatctatgattt
tgttgaagatgttttctggtcctttgaaaagagaatcatcatactcttct
atcttttcattgtgtctcaaatttcctgaatgtttttcattaggaacttt
ttacactttgtgggtttgtttatttatttacttatttatttatttattta
tttatttattgatacgtctatatcttctgtggtatcttatatagctgaga
ttcccccttctatctcttgtattctgctggggatgcttgcctctgtagcc
cctgatctttctcctaggttttccatctgcaggattgcttccatttgtga
tttctttattgttcctttttccatttttagatcttagagagttttgttca
atttctttacctgtatgattgtgttttcctgtatttctttaagggattta
tttgtttcctctttaaggtcttatacatgtttacctgtgtttggctgtat
ttttaaagggagttatttgtgtcctccttaaggttctctatcatcttcag
gagatgtgatcttaggtcagaatcttgcttttcagatgtgttgatgtatc
caggacttgcaattgtaggacaactgggctatgattataccaagttgcat
tggtttctgttgcccactttcttgtccttacctgtcaccatctgtatatg
cctggtgttaactgtcctggttatctctgactggagcctgtccctccttt
tagcaggtagacctttgtgacctggattagagcaggcatcctggagctga
cagtgctgtctctgttaggttgcttcctgtgttcctagttagccatgtct
cctgtttcctggtatgcagacccct
gaattctcttcctctaggtgttactactctataagacagaaaatatccca
gatagtctttgatgaaataactcattaatttattctttgaggatagtgtc
ttatacacatttagaggtgttttggggtggaaaaaagacactttatattt
ccttagtctgagatgttatggatacctcattttcataagcaggacctttg
ggtgttgctcctctgtgactaattgtcacaatcctctccatgggatggtg
taagtacattttcctagacaggaacctgatcaggagtagattaaatgcca
acaattcttagatattatggagatttatgaacgcacttgatctttatacc
tggtatcatggtccattgccacacagaaaagggaagaacagatcttttta
aaagagaagaaataatgagataaaggaagatgaagagtcatgcatgaaga
gaaaatactaactcattctggatgaagcagaaaaatagagctttaacctc
tttacaagcatacatgtacataaatacatatatagaatggaccatagcac
catgaagaaagttccagtatcctgtattttcttgttctcagtatttgttc
tgtctctaaaaaatattacctcatatgaaaatcaagtgggaccctttcat
caggataatataacaagacttttaaaatagttttgtattccaatgtcatc
cttgcaagtttaaggcaataatacaggtcataaattgttaagacctaggg
aatatcagcaagtatggaacacaatgggaataccaattttaagaataata
ggaatagaagaaaatgaatattacccattcaagggcaagaaaacagcttc
aactaaatcatagatgaaaacttcactaacctaaaaaagaattggccata
aatgtacaggagcatatgaacactaaatagatttactggaaagcaatcta
tctcacatatatataaaattatagtaaaaataaaatgatgatatatatat
catgatgtacagaacaggaaaaatatttaagctgtgaggacaaaaagcca
atacatacaaggcagtcaattcccaaaaaactttctcaaagagagctaag
ctgatgagacatacacaagtttagcagtcctgggtaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109662868_109663178
seq2: B6Ng01-142L11.b_363_598 (reverse)

seq1  AATAAATCACTTAAAGAAATACAGGAGAACACTGCTAAAGAGTTACAAGT  50
                                           || |     ||  
seq2  -------------------------------------AATA-----AATC  8

seq1  CCTTAAAGAAAAACAGGAAAACACAATCAAACAGGTAGAAGTCCTTACAG  100
      ||||||||||| ||||||||||||||||| ||||||              
seq2  CCTTAAAGAAATACAGGAAAACACAATCATACAGGT--------------  44

seq1  AAAAAGAGGAAAAAACATACAAACAGGTGATGGAAATGAACAAAACCATA  150
        |||||                          || ||||||||||  | 
seq2  --AAAGA--------------------------AATTGAACAAAACTCTC  66

seq1  CTAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAACTCAAAGTGAGGC  200
        ||| ||||||| ||||  ||  |||||||||||| | ||||  || ||
seq2  TAAGATCTAAAAATGGAAAAAGGAACAATAAAGAAATCACAAATGGAAGC  116

seq1  AACACTGGAGATAGAAACCCTAGGAAAGAAATCTGGAACCATAGATTTGA  250
      ||  ||| |||| |||| ||||||| | | ||| ||  | | |||    |
seq2  AATCCTGCAGATGGAAAACCTAGGAGAAAGATCAGGGGCTACAGAGGCAA  166

seq1  GCATCAGCAACAGAATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAA  300
      |||||  || ||||||||||||||| |||| | ||||||||| |  | ||
seq2  GCATCCCCAGCAGAATACAAGAGATAGAAGGGGGAATCTCAGCTATATAA  216

seq1  GATTCCATAGA---------  311
      ||| ||| |||         
seq2  GATACCACAGAAGATATAGA  236

seq1: chr3_91743202_91744368
seq2: B6Ng01-142L11.g_68_1207

seq1  GAATTCTCTTCCTCTAGGTGTTACTACTCTATAAGACAGAAAATATCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCTCTAGGTGTTACTACTCTATAAGACAGAAAATATCCCA  50

seq1  GATAGTCTTTGATGAAATAACTCATTAATTTATTCTTTGAGGATAGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCTTTGATGAAATAACTCATTAATTTATTCTTTGAGGATAGTGTC  100

seq1  TTATACACATTTAGAGGTGTTTTGGGGTGGAAAAAAGACACTTTATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACACATTTAGAGGTGTTTTGGGGTGGAAAAAAGACACTTTATATTT  150

seq1  CCTTAGTCTGAGATGTTATGGATACCTCATTTTCATAAGCAGGACCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTCTGAGATGTTATGGATACCTCATTTTCATAAGCAGGACCTTTG  200

seq1  GGTGTTGCTCCTCTGTGACTAATTGTCACAATCCTCTCCATGGGATGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGCTCCTCTGTGACTAATTGTCACAATCCTCTCCATGGGATGGTG  250

seq1  TAAGTACATTTTCCTAGACAGGAACCTGATCAGGAGTAGATTAAATGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACATTTTCCTAGACAGGAACCTGATCAGGAGTAGATTAAATGCCA  300

seq1  ACAATTCTTAGATATTATGGAGATTTATGAACGCACTTGATCTTTATACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCTTAGATATTATGGAGATTTATGAACGCACTTGATCTTTATACC  350

seq1  TGGTATCATGGTCCATTGCCACACAGAAAAGGGAAGAACAGATCTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCATGGTCCATTGCCACACAGAAAAGGGAAGAACAGATCTTTTTA  400

seq1  AAAGAGAAGAAATAATGAGATAAAGGAAGATGAAGAGTCATGCATGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAGAAATAATGAGATAAAGGAAGATGAAGAGTCATGCATGAAGA  450

seq1  GAAAATACTAACTCATTCTGGATGAAGCAGAAAAATAGAGCTTTAACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACTAACTCATTCTGGATGAAGCAGAAAAATAGAGCTTTAACCTC  500

seq1  TTTACAAGCATACATGTACATAAATACATATATAGAATGGACCATAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAGCATACATGTACATAAATACATATATAGAATGGACCATAGCAC  550

seq1  CATGAAGAAAGTTCCAGTATCCTGTATTTTCTTGTTCTCAGTATTTGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGAAAGTTCCAGTATCCTGTATTTTCTTGTTCTCAGTATTTGTTC  600

seq1  TGTCTCTAAAAAATATTACCTCATATGAAAATCAAGTGGGACCCTTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTAAAAAATATTACCTCATATGAAAATCAAGTGGGACCCTTTCAT  650

seq1  CAGGATAATATAACAAGACTTTTAAAATAGTTTTGTATTCCAATGTCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAATATAACAAGACTTTTAAAATAGTTTTGTATTCCAATGTCATC  700

seq1  CTTGCAAGTTTAAGGCAATAATACAGGTCATAAATTGTTAAGACCTAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAGTTTAAGGCAATAATACAGGTCATAAATTGTTAAGACCTAGGG  750

seq1  AATATCAGCAAGTATGGAACACAATGGGAATACCAATTTTAAGAATAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAGCAAGTATGGAACACAATGGGAATACCAATTTTAAGAATAATA  800

seq1  GGAATAGAAGAAAATGAATATTACCCATTCAAAGGGCAAGAAAACAGCTT  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAATAGAAGAAAATGAATATTACCCATTC-AAGGGCAAGAAAACAGCTT  849

seq1  CAACTAAATCATAGATGAAAACTTCACTAACCTAAAAAAAGAATTGGCCA  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAACTAAATCATAGATGAAAACTTCACTAACCT-AAAAAAGAATTGGCCA  898

seq1  TAAATGTACAAGGAGCATATTGAACACTAAATAGATTTTACTGGAAAAGC  950
      ||||||||| ||||||||| ||||||||||||||| |||||||| |||||
seq2  TAAATGTAC-AGGAGCATA-TGAACACTAAATAGA-TTTACTGG-AAAGC  944

seq1  AATCTATCTCACAATATAATAATAAAATTATAGTAAAAATAAAAATGATG  1000
      |||||||||||| |||||   ||||||||||||||||||| |||||||||
seq2  AATCTATCTCAC-ATATA--TATAAAATTATAGTAAAAAT-AAAATGATG  990

seq1  ATAATAATAATAATCATGATGTACAGAACAAAGGAAAAATATTTAAAGCT  1050
      ||    |||   |||||||||||||||||  ||||||||||||| |||||
seq2  AT----ATATATATCATGATGTACAGAAC--AGGAAAAATATTT-AAGCT  1033

seq1  GTGAGGACAAAAAGCCAAATAACATACAAAGGCAGTCAAATTTCCAAAAA  1100
      ||||||||||||||||||   |||||| ||||||||| |||| |||||||
seq2  GTGAGGACAAAAAGCCAA--TACATAC-AAGGCAGTC-AATTCCCAAAAA  1079

seq1  AACTTCTCAAAAGAGAAGCTAAAAGCCTGATGAGACATACACAGAGTTTA  1150
      |  ||||| |||||| ||||||    ||||||||||||||||| ||||||
seq2  ACTTTCTC-AAAGAG-AGCTAA---GCTGATGAGACATACACA-AGTTTA  1123

seq1  GCAGTCCTGGTTAGGAT  1167
      |||||||||| ||||||
seq2  GCAGTCCTGGGTAGGAT  1140