BAC Information

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BAC

Clone NameB6Ng01-142M16
Chromosome3 (Build37)
Map Location 129,133,084 - 129,276,129
singlet/doubletdoublet
Overlap geneLOC435755, LOC668840, Elovl6, LOC100043758
Upstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415
Downstream geneEgf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142M16.bB6Ng01-142M16.g
ACCDH940898DH940899
length198737
definitionDH940898|Mus musculus domesticus DNA, BAC clone: B6Ng01-142M16, 5' end.DH940899|Mus musculus domesticus DNA, BAC clone: B6Ng01-142M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,133,084 - 129,133,281)(129,275,397 - 129,276,129)
sequence
agtaattgaattgaatataaatacagaatcaaaagtaataggtcaggagt
tgggcatggtgactcacacctgtaatcttagcaattgggaggtagggtca
ggaagaacagaagttcacagccaatttcaagtatagagttcaaggccaac
ctggactatatgaaagcttgttcaaagacacacagagagagaaggggg
gaattctctccagacctcagattctacccctgaccttggaggatttgtct
aagacagagatgatacctcagacttgtcaaggctgggatgtggagcaatc
gaaagggggtggggttggggggactgacaaacacgctccctctcaggata
ttttgaagtggctattagtttcctcctactgcttgcttctcttcctaaga
tagaagaatccggtgtgaatggtgtgagcaaggcagaagtaattgacagg
caaatgaatggattctttgtcaaagatctacagacttagggaacttgact
aagccttcttaattttctttaaagcaaggacaccatgagaggaaaaagca
cctctgtgtgttgagaaatagaaatctaaacagaagctagtcttccattc
tcagtatcctagttcaaggcattttgaaatagccctgacaatgcaaatga
taaacctcccttcacagatttgttacacccaggttcatgaagccttctca
gcgcctggcccggcaaacttgaaacagacgtgccacaagaaatgaactct
tcgccgtttgggattctttgcatcaatttggcctagactttgttcaaagt
ggttttcaattcaatagaagtctgaatacactggtcgcagtgaaatgcaa
gccattcgtttgtgtatcaaattattcctggtgtgcttgcatttatacat
caatatttcctggcactgcagcgggcatctttaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_129133084_129133281
seq2: B6Ng01-142M16.b_53_250

seq1  AGTAATTGAATTGAATATAAATACAGAATCAAAAGTAATAGGTCAGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTGAATTGAATATAAATACAGAATCAAAAGTAATAGGTCAGGAGT  50

seq1  TGGGCATGGTGACTCACACCTGTAATCTTAGCAATTGGGAGGTAGGGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGGTGACTCACACCTGTAATCTTAGCAATTGGGAGGTAGGGTCA  100

seq1  GGAAGAACAGAAGTTCACAGCCAATTTCAAGTATAGAGTTCAAGGCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAACAGAAGTTCACAGCCAATTTCAAGTATAGAGTTCAAGGCCAAC  150

seq1  CTGGACTATATGAAAGCTTGTTCAAAGACACACAGAGAGAGAAGGGGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTATATGAAAGCTTGTTCAAAGACACACAGAGAGAGAAGGGGG  198

seq1: chr3_129275397_129276129
seq2: B6Ng01-142M16.g_68_804 (reverse)

seq1  GAGTTAAAGATGCCCGCTGCAGTGCCAGGAAATATTGATGTATAAATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAAGATGCCCGCTGCAGTGCCAGGAAATATTGATGTATAAATGCA  50

seq1  AGCACACCAGGAATAA-TTGATACACAAACGAATGGCTTGCATTTCACTG  99
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCACACCAGGAATAATTTGATACACAAACGAATGGCTTGCATTTCACTG  100

seq1  CGACCAGTGTATTCAGACTTCTATTGAATTGAAAACCACTTTGAAC-AAG  148
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CGACCAGTGTATTCAGACTTCTATTGAATTGAAAACCACTTTGAACAAAG  150

seq1  TCTAGGCC-AATTGATGCAAAGAATCCCAAACGGCGAAGAGTTCATTTCT  197
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCCAAATTGATGCAAAGAATCCCAAACGGCGAAGAGTTCATTTCT  200

seq1  TGTGGCACGTCTG-TTCAAGTTTGCCGGGCCAGGCGCTGAGAAGGCTTCA  246
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTGGCACGTCTGTTTCAAGTTTGCCGGGCCAGGCGCTGAGAAGGCTTCA  250

seq1  TGAACCTGGGTGTAACAAATCTGTGAAGGGAGGTTTATCATTTGCATTGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTGGGTGTAACAAATCTGTGAAGGGAGGTTTATCATTTGCATTGT  300

seq1  CAGGGCTATTTCAAAATGCCTTGAACTAGGATACTGAGAATGGAAGACTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTATTTCAAAATGCCTTGAACTAGGATACTGAGAATGGAAGACTA  350

seq1  GCTTCTGTTTAGATTTCTATTTCTCAACACACAGAGGTGCTTTTTCCTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGTTTAGATTTCTATTTCTCAACACACAGAGGTGCTTTTTCCTCT  400

seq1  CATGGTGTCCTTGCTTTAAAGAAAATTAAGAAGGCTTAGTCAAGTTCCCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTCCTTGCTTTAAAGAAAATTAAGAAGGCTTAGTCAAGTTCCCT  450

seq1  AAGTCTGTAGATCTTTGACAAAGAATCCATTCATTTGCCTGTCAATTACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGTAGATCTTTGACAAAGAATCCATTCATTTGCCTGTCAATTACT  500

seq1  TCTGCCTTGCTCACACCATTCACACCGGATTCTTCTATCTTAGGAAGAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTGCTCACACCATTCACACCGGATTCTTCTATCTTAGGAAGAGA  550

seq1  AGCAAGCAGTAGGAGGAAACTAATAGCCACTTCAAAATATCCTGAGAGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCAGTAGGAGGAAACTAATAGCCACTTCAAAATATCCTGAGAGGG  600

seq1  AGCGTGTTTGTCAGTCCCCCCAACCCCACCCCCTTTCGATTGCTCCACAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGTTTGTCAGTCCCCCCAACCCCACCCCCTTTCGATTGCTCCACAT  650

seq1  CCCAGCCTTGACAAGTCTGAGGTATCATCTCTGTCTTAGACAAATCCTCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTTGACAAGTCTGAGGTATCATCTCTGTCTTAGACAAATCCTCC  700

seq1  AAGGTCAGGGGTAGAATCTGAGGTCTGGAGAGAATTC  733
      |||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGGGGTAGAATCTGAGGTCTGGAGAGAATTC  737