BAC Information

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BAC

Clone NameB6Ng01-142O13
Chromosome3 (Build37)
Map Location 85,865,480 - 85,994,503
singlet/doubletdoublet
Overlap geneSh3d19, Rps3a, LOC634201
Upstream geneLOC100042237, LOC100042125, Pet112l, 9930021J17Rik, Glt28d2, LOC100042265, Gm1019
Downstream geneLrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142O13.bB6Ng01-142O13.g
ACCDH940986DH940987
length9571,177
definitionDH940986|Mus musculus domesticus DNA, BAC clone: B6Ng01-142O13, 5' end.DH940987|Mus musculus domesticus DNA, BAC clone: B6Ng01-142O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,993,926 - 85,994,503)(85,865,480 - 85,866,672)
sequence
gaattcagttacggtgtgtcattgctaactactgttatttgtgttttgtt
tctcttttgtgtgtgtgtgtgtgtcagtgttcgtcttaatataaagcaga
ggctggcttggaactctcaagccttctgcctcagtttcccctgtgctaga
tttacagcacagcttttgttattttttttctgtatacttttcacctggat
tctgaagatatttctagaaccagtcttgtcactatagagtagaaatatag
tcattggtttctctttttaaaaaatattttctttatgtgattgtgtgtgt
gcctgagtgtgtgcacaccacatgtgtgcagaggcccacaggagtcagga
gaaacctcaaattccctggaactggagttctgagaggttgtgagccatct
agtatgggtgctgggaacccgggttgtctgcaagtgcccttaaccactga
gcaatcctcccagaccctataattgaattttagttatatactatacaact
gtcttatgatatacaagatacagaattgagggtatagcttattactacag
tacttgattagcatgtgaaaggctatgggttcagtccctagcactgtaaa
acacacacacacacacacacacacacacacacacacacacacaacaatgt
atacaatgcattgggttttagtacattcagaagtagccatttagtcagtt
atctgcatcatcattatctagttccagaacatttttaatagtccaagagt
aaatgttatacccacaacttcattcctcatttctcattttcccaacttat
tcctggctaacactgatgtaacggtaagctttaatgtttgcctagtctgg
acatttatacaaatggaattatagaatatgtggccttttgtctggcttct
ttcacttacacagtgtttccatccatgtgctgcatgtatcaacacttctt
tactttt
gaattcacttatattcaaaaataattactcacttgtgaggcagaggcagg
agaatctctctgagtttgaggccgtcctggtctatataacagtaccaggc
cagccaagaatacatagtgaacccctgtctcagaaacaattattgtatgt
gttagcatttttctaagtaatgaggtaattcatactaattattaagacat
gtgaaatttaatttttttaaaaaaactccataataattttgttgtggctg
aattatctaaaatgctactgagaattggcaatcttagcctactgaccttt
tcttcatttcactaatacttccttttttgtagctcacagacccagatata
tatacctttacctgagtttgagtggtgagcctgcaagtgggttggcttga
cccactccccaagatggttctgacctcatttgggaaaatacgttgggatt
tgacaaggggtttaatatcctgaggaacaactttgtcagtcagctttaaa
cattcttgttacatttatttgtggagagggcatatgctacacctggccgg
agtctcgtctctccttctaccatgtaggtcctagggatggctcttaggtc
ccccggctcggcacatgctccatccactgcactgtctccatggccccatc
actcagcctgcagtgagccggtgtcctcaccttttttagtacttcctgtg
aggctgctatcactgctggccttcctgtcatggaggtcccacccaatttt
cttcagatcctggctttcttgagtcatggcttgtgtgagtaatgtcaact
ttagagtaaagcttaggtctcaccccaccatctacaggttgcagttcacc
atgcgattgcccccaccacacacttctcttcctgagagaggagacccagt
gtcctctgacatgattctgtgcagacaggacagccataaatctaggggaa
agttttgggcttggtttcagtgggggtccctctctgtagcagaatgccca
gtggtaccacagtagctgtcatctcatcaacggcagtataaaacatggac
taggattgatatcttcttatcatttccatggcactctagccaggataaaa
atgctgattccaggttgagaaaattgcagtataagtatcaaaggccaacc
atgtgtgaattttcaaggtgagacctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_85993926_85994503
seq2: B6Ng01-142O13.b_48_625 (reverse)

seq1  CCATAGCCTTTCACATGCTAATCAAGTACTGTAGTAATAAGCTATACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCCTTTCACATGCTAATCAAGTACTGTAGTAATAAGCTATACCCT  50

seq1  CAATTCTGTATCTTGTATATCATAAGACAGTTGTATAGTATATAACTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTGTATCTTGTATATCATAAGACAGTTGTATAGTATATAACTAAA  100

seq1  ATTCAATTATAGGGTCTGGGAGGATTGCTCAGTGGTTAAGGGCACTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTATAGGGTCTGGGAGGATTGCTCAGTGGTTAAGGGCACTTGCA  150

seq1  GACAACCCGGGTTCCCAGCACCCATACTAGATGGCTCACAACCTCTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCCGGGTTCCCAGCACCCATACTAGATGGCTCACAACCTCTCAGA  200

seq1  ACTCCAGTTCCAGGGAATTTGAGGTTTCTCCTGACTCCTGTGGGCCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTTCCAGGGAATTTGAGGTTTCTCCTGACTCCTGTGGGCCTCTG  250

seq1  CACACATGTGGTGTGCACACACTCAGGCACACACACAATCACATAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGTGGTGTGCACACACTCAGGCACACACACAATCACATAAAGAA  300

seq1  AATATTTTTTAAAAAGAGAAACCAATGACTATATTTCTACTCTATAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTTAAAAAGAGAAACCAATGACTATATTTCTACTCTATAGTGA  350

seq1  CAAGACTGGTTCTAGAAATATCTTCAGAATCCAGGTGAAAAGTATACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTGGTTCTAGAAATATCTTCAGAATCCAGGTGAAAAGTATACAGA  400

seq1  AAAAAAATAACAAAAGCTGTGCTGTAAATCTAGCACAGGGGAAACTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATAACAAAAGCTGTGCTGTAAATCTAGCACAGGGGAAACTGAGG  450

seq1  CAGAAGGCTTGAGAGTTCCAAGCCAGCCTCTGCTTTATATTAAGACGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCTTGAGAGTTCCAAGCCAGCCTCTGCTTTATATTAAGACGAAC  500

seq1  ACTGACACACACACACACACAAAAGAGAAACAAAACACAAATAACAGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACACACACACACACACAAAAGAGAAACAAAACACAAATAACAGTAG  550

seq1  TTAGCAATGACACACCGTAACTGAATTC  578
      ||||||||||||||||||||||||||||
seq2  TTAGCAATGACACACCGTAACTGAATTC  578

seq1: chr3_85865480_85866672
seq2: B6Ng01-142O13.g_69_1245

seq1  GAATTCACTTATATTCAAAAATAATTACTCACTTGTGAGGCAGAGGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTATATTCAAAAATAATTACTCACTTGTGAGGCAGAGGCAGG  50

seq1  AGAATCTCTCTGAGTTTGAGGCCGTCCTGGTCTATATAACAGTACCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTCTCTGAGTTTGAGGCCGTCCTGGTCTATATAACAGTACCAGGC  100

seq1  CAGCCAAGAATACATAGTGAACCCCTGTCTCAGAAACAATTATTGTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGAATACATAGTGAACCCCTGTCTCAGAAACAATTATTGTATGT  150

seq1  GTTAGCATTTTTCTAAGTAATGAGGTAATTCATACTAATTATTAAGACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCATTTTTCTAAGTAATGAGGTAATTCATACTAATTATTAAGACAT  200

seq1  GTGAAATTTAATTTTTTTAAAAAAACTCCATAATAATTTTGTTGTGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTTAATTTTTTTAAAAAAACTCCATAATAATTTTGTTGTGGCTG  250

seq1  AATTATCTAAAATGCTACTGAGAATTGGCAATCTTAGCCTACTGACCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCTAAAATGCTACTGAGAATTGGCAATCTTAGCCTACTGACCTTT  300

seq1  TCTTCATTTCACTAATACTTCCTTTTTTGTAGCTCACAGACCCAGATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATTTCACTAATACTTCCTTTTTTGTAGCTCACAGACCCAGATATA  350

seq1  TATACCTTTACCTGAGTTTGAGTGGTGAGCCTGCAAGTGGGTTGGCTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTTTACCTGAGTTTGAGTGGTGAGCCTGCAAGTGGGTTGGCTTGA  400

seq1  CCCACTCCCCAAGATGGTTCTGACCTCATTTGGGAAAATACGTTGGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCCCAAGATGGTTCTGACCTCATTTGGGAAAATACGTTGGGATT  450

seq1  TGACAAGGGGTTTAATATCCTGAGGAACAACTTTGTCAGTCAGCTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGGGTTTAATATCCTGAGGAACAACTTTGTCAGTCAGCTTTAAA  500

seq1  CATTCTTGTTACATTTATTTGTGGAGAGGGCATATGCTACACCTGGCCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTGTTACATTTATTTGTGGAGAGGGCATATGCTACACCTGGCCGG  550

seq1  AGTCTCGTCTCTCCTTCTACCATGTAGGTCCTAGGGATGGCTCTTAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCGTCTCTCCTTCTACCATGTAGGTCCTAGGGATGGCTCTTAGGTC  600

seq1  CCCCGGCTCGGCACATGCTCCATCCACTGCACTGTCTCCATGGCCCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGCTCGGCACATGCTCCATCCACTGCACTGTCTCCATGGCCCCATC  650

seq1  ACTCAGCCTGCAGTGAGCCGGTGTCCTCACCTTTTTTAGTACTTCCTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCCTGCAGTGAGCCGGTGTCCTCACCTTTTTTAGTACTTCCTGTG  700

seq1  AGGCTGCTATCACTGCTGGCCTTCCTGTCATGGAGGTCCCACCCAATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTATCACTGCTGGCCTTCCTGTCATGGAGGTCCCACCCAATTTT  750

seq1  CTTCAGATCCTGGCTTTCTTGAGTCATGGCTTGTGTGAGTAATGTCAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGATCCTGGCTTTCTTGAGTCATGGCTTGTGTGAGTAATGTCAACT  800

seq1  TTAGAGTAAAGCTTAGGTTCTCACCCCACCATCTACA-GTTGCAGTTCAC  849
      ||||||||||||||||| ||||||||||||||||||| ||||||||||||
seq2  TTAGAGTAAAGCTTAGG-TCTCACCCCACCATCTACAGGTTGCAGTTCAC  849

seq1  CATGCGATTGCCCCCACCACACACTTCTCTTCCTGAGAAGAGGAGAACCC  899
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  CATGCGATTGCCCCCACCACACACTTCTCTTCCTGAG-AGAGGAG-ACCC  897

seq1  AGTGTCCTCTGACATGATTCTGTGCAGACAGGAACAGCCATAAATCTAGG  949
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  AGTGTCCTCTGACATGATTCTGTGCAGACAGG-ACAGCCATAAATCTA-G  945

seq1  GGGAAAGTTTTGGCCTTGGTTTCAGT-GGGGTCCCTCTCTGTAGCAGAAT  998
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  GGGAAAGTTTTGGGCTTGGTTTCAGTGGGGGTCCCTCTCTGTAGCAGAAT  995

seq1  GCCCAGTGTTACCACAGTAGCTGTCATCTCATCAACAGCAGTAATAAAAC  1048
      |||||||| ||||||||||||||||||||||||||| ||||| |||||||
seq2  GCCCAGTGGTACCACAGTAGCTGTCATCTCATCAACGGCAGT-ATAAAAC  1044

seq1  ATGGACTAGGATTGAATATCTTCTTATCAAATATTCAGTGGCA-TCTAAG  1097
      |||||||||||||| ||||||||||||||    |||  ||||| ||| ||
seq2  ATGGACTAGGATTG-ATATCTTCTTATCA---TTTCCATGGCACTCT-AG  1089

seq1  CCAGGATAAAATAGGCTGAATCACAGGTTGAGAAAATAGCAAAGTAATAG  1147
      ||||||||||| | ||||| || |||||||||||||| ||  ||| ||| 
seq2  CCAGGATAAAA-ATGCTGATTC-CAGGTTGAGAAAATTGC--AGT-ATAA  1134

seq1  ATACAAAAAGCACAAAACCA-ATGTGAATTTCCATAGTAGAGACCTC  1193
       ||  ||| ||    |||||  ||||||||| || ||  ||||||||
seq2  GTATCAAAGGC---CAACCATGTGTGAATTTTCA-AGGTGAGACCTC  1177