BAC Information

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BAC

Clone NameB6Ng01-143A06
Chromosome3 (Build37)
Map Location 145,505,795 - 145,670,845
singlet/doubletdoublet
Overlap geneDdah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2
Upstream geneClca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61
Downstream geneWdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143A06.bB6Ng01-143A06.g
ACCDH941065DH941066
length9811,066
definitionDH941065|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A06, 5' end.DH941066|Mus musculus domesticus DNA, BAC clone: B6Ng01-143A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,505,795 - 145,506,582)(145,669,759 - 145,670,845)
sequence
gaattccgttctcttaggcagcctgctgggctctgttcttccgttttgtt
tgacatctctgtggggttagcatgcccaacttgatgctgaacctctcaca
actgtccacttcatgtttaagttttttaaactctttctcacatttgactc
tgaaagtaatctagtaccatccacatggatgatgcagacctcccccaaaa
cctggcggtagagcagcaacaaaatataattacatctggattacacataa
tccagatgtaatgtaatgtctggatacctggtttcacagttaggaaacca
caaaattttatcctctaaaatcaatttccctttagaataattttgtccta
agtgtccaacagcttcttaactctgtacatgcactcaaagtttccaaagg
aaaaaaaatgtctgattatatgatcctgacggatcacttttcaaaaccag
gagaaaaaataaactttcaatttggaaagacataagacgtgagagatgga
aggaggtgtttcagatacagtgtacagtgacagtgccgccttgtttctgt
ctttcactctgaagagtttaactgaacgtcctcagttgagacgctgtgta
gttatagaagcatttccgagcggaaccggtgttgccgccgaattcccagt
tactgatatgttaacttccagaacccggtcctcatgccttctccttacac
tcggtgaattttctatatgacactaagactgacaagtgtgtgtgtgagtg
tgagtgtgtgtgtgagcatgtgggttgagggtgctattgctgtgatggta
caccatgaccaaagtaaattgggtacaaaaggctgtatttggctcatact
tccacatcactgttcaacattcaaggtcaggacaggaactaagccatagg
taagtggaggcaggatgatacagaggcagggaggagtgctgataatggct
gtcacatgtctagccgaataatgtttcttac
gaattctctatgaccgttactctcaagcttccttttttttttcccagtgc
ctcacggctactagtactgttctcaatgctatacgtgcggctacagttgc
cgcagggacaaataagtctcttcatgctgggaatgaatggtggggctgac
ccatataaccccaacacttgggaggctgaggcacgaggattgcaaatctg
atgccagcttgagctacctgatgagatcttgactcggggaggaaagagga
acgcccccattcccacgatagcttttcctcatgagcagagaaccaagttc
ccttggatgtgtgtgccctcaggtccccctcaccccagatctccagggtg
tactttctccctctcgtctctgaagtccatcaagtacagttgccggatta
acatccctcacaatagccttgaatgactgcagtctgctactcaaaacact
ttaatggatcctctgccgagtaagtctaagttgtttaatcagtcactcgt
ctgccagtcaggctgcctcctgcggctgcttctctcctgaagacacaggt
ctgctgttggctgcttagtaacagatctgcatcttaatgcctcccctcag
agaataaacagtcagtttatgaaggaaagcaagacttcagaaaggatgca
aatcagacgtaggtcataaacacttatttgcacattctttactatagaat
aatatcctacagaacacaaataattcccatgtttttacctgttattacat
ttataactgggtactggtttcacacagaccaacatcttgctgtccttctc
aaaccctctcgaagctctttcatccccgccgctgaccacacaacgataca
ggcctagacctataaacaaatgccgcgtacagagacgatatgatatgatg
gcatgatataatcccatgacctgacatcaaaataccctgctgtcatccta
caccctcaatgcagcttctgaattctctaataattgatgagattgtgacg
aagaaaataaggcctttttttaatttttaaacaattaccaaacaggaata
aataagtaaatttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145505795_145506582
seq2: B6Ng01-143A06.b_45_810

seq1  GAATTCAGTTCTCAGTAGGCAGCCTGCTGGGCTCTGTTCTTCCGTTTTGT  50
      |||||| ||||||  |||||||||||||||||||||||||||||||||||
seq2  GAATTCCGTTCTC-TTAGGCAGCCTGCTGGGCTCTGTTCTTCCGTTTTGT  49

seq1  TAGACATCTCTCTGGGGTTAGCATGCCCAACTTGATGCTGAACCTCTCAC  100
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTGACATCTCTGTGGGGTTAGCATGCCCAACTTGATGCTGAACCTCTCAC  99

seq1  AACTGTCCACTTCATGTTTAAGTTTTTTAAACTCTTTCAGACATTTGACT  150
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  AACTGTCCACTTCATGTTTAAGTTTTTTAAACTCTTTCTCACATTTGACT  149

seq1  CTGAAAGTAATCTAGTACCATCCACATGGATGATGCAGACCTCCCCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTAATCTAGTACCATCCACATGGATGATGCAGACCTCCCCCAAA  199

seq1  ACCTGGCGGTAGAGCAGCAACAGAATATAATTACATCTGGATTACACATA  250
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACCTGGCGGTAGAGCAGCAACAAAATATAATTACATCTGGATTACACATA  249

seq1  ATCCAGATGTAATGTAATGTCGGGATACCTGGTTTCACAGTTAGGAAACC  300
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATCCAGATGTAATGTAATGTCTGGATACCTGGTTTCACAGTTAGGAAACC  299

seq1  ACAAAATTTTATCCTCTAAAATCAATTTCCCTTTAGAATAATTTTGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTTTATCCTCTAAAATCAATTTCCCTTTAGAATAATTTTGTCCT  349

seq1  AAGTGTCCAACAGCTTCTTAACTCTGTACATGCACTCAAAGTTTCCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCCAACAGCTTCTTAACTCTGTACATGCACTCAAAGTTTCCAAAG  399

seq1  GAAAAAAAATGTCTGATTATATGATCCTGACGGATCACTTTTCAAAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAATGTCTGATTATATGATCCTGACGGATCACTTTTCAAAACCA  449

seq1  GGAGAAAAAATAAACTTTCAATTTGGAAAGACATAAGACGTGAGAGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAAATAAACTTTCAATTTGGAAAGACATAAGACGTGAGAGATGG  499

seq1  AAGGAGGTGTTTCAGAGACAGTGTACAGTGACAGTGCCGCCTTGTTTCTG  550
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGGAGGTGTTTCAGATACAGTGTACAGTGACAGTGCCGCCTTGTTTCTG  549

seq1  TCTTTCACTCTGAAGAGTTTAACTGAAGGTCCTCAGTTGAGACGCTGTGT  600
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTTTCACTCTGAAGAGTTTAACTGAACGTCCTCAGTTGAGACGCTGTGT  599

seq1  AGTTATAGAAGCATTTCCGAGCGGAACCGGTGTTGCCGCCGAATTCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGAAGCATTTCCGAGCGGAACCGGTGTTGCCGCCGAATTCCCAG  649

seq1  TTACTGAAATGTTAACTTCCAGAGCCCGGTCCTCATGCCTTCTCCTTACA  700
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  TTACTGATATGTTAACTTCCAGAACCCGGTCCTCATGCCTTCTCCTTACA  699

seq1  CTCGGTGAATTTTCTATA-GACACTAAAGCTGACAAGTGTGTGTGTGTGT  749
      |||||||||||||||||| ||||||||  |||||||||||||||||| ||
seq2  CTCGGTGAATTTTCTATATGACACTAAGACTGACAAGTGTGTGTGTGAGT  749

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAG  788
      ||| ||||||||||| |                      
seq2  GTGAGTGTGTGTGTGAG----------------------  766

seq1: chr3_145669759_145670845
seq2: B6Ng01-143A06.g_68_1133 (reverse)

seq1  TTTAATTTTACTTATTTTATTTCCTGTTTGTTTATTTGTTTTAAAATTTA  50
      ||||| |||||||||||   ||||||||||  || |||||| |||||| |
seq2  TTTAAATTTACTTATTT--ATTCCTGTTTG-GTAATTGTTTAAAAATTAA  47

seq1  AAATAGGCTTTATTTTCTTCTGTCACAATCTCATCAATTAATTAGAGATT  100
      ||| |||| ||||||||||| |||||||||||||||||| |||||||| |
seq2  AAAAAGGCCTTATTTTCTTC-GTCACAATCTCATCAATT-ATTAGAGAAT  95

seq1  TCAGAAGCTGCATTTGAGGTGTTAGGATGACAGCAGGGTATTTTTGATTG  150
      |||||||||||| ||||||   |||||||||||||||||| |||||| ||
seq2  TCAGAAGCTGCA-TTGAGGGTGTAGGATGACAGCAGGGTA-TTTTGA-TG  142

seq1  TCAGGTTCATGGGATTTATATCATGCCATCATATTCATTATCGTCTCTGT  200
      ||||| |||||||| |||||||||||||||||| ||| ||||||||||||
seq2  TCAGG-TCATGGGA-TTATATCATGCCATCATA-TCA-TATCGTCTCTGT  188

seq1  AACGCGGCATTTTGTTTCTAGGTTGTAGGCCTGTATCGATTGTGTGGTTC  250
       |||||||| ||||||| |||| | ||||||||||||| |||||||| ||
seq2  -ACGCGGCA-TTTGTTTATAGG-TCTAGGCCTGTATCG-TTGTGTGG-TC  233

seq1  AGCGGCGGTGAAGAAAGAGCTTCGAGAGGCTTTTGAGAAGGACAGCAAGA  300
      |||||||| || |||||||||||||||||  |||||||||||||||||||
seq2  AGCGGCGGGGATGAAAGAGCTTCGAGAGG-GTTTGAGAAGGACAGCAAGA  282

seq1  CTGTTGGTCTGTGTGAAAACCAGTACCCAGATATAAATGTAATAACAGGT  350
       |||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  -TGTTGGTCTGTGTG-AAACCAGTACCCAGTTATAAATGTAATAACAGGT  330

seq1  AAAAACATGGGCATTATTTTGTGTTCTGTAGGATATTATTCTATAGGAAA  400
      ||||||||||| |||| ||||||||||||||||||||||||||||| |||
seq2  AAAAACATGGGAATTA-TTTGTGTTCTGTAGGATATTATTCTATAGTAAA  379

seq1  GAATGTGGAAATAAGTGTTTATAACCTACGTTTGATTTGCTTTTGTTCTG  450
      ||||||| |||||||||||||| |||||||| |||||||| |   |||||
seq2  GAATGTGCAAATAAGTGTTTATGACCTACGTCTGATTTGCATCCTTTCTG  429

seq1  AAGTCTTGCTTTCCTTCATAAACTGACTGTTTATTCTCTGAGGGGAGGAA  500
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGTCTTGCTTTCCTTCATAAACTGACTGTTTATTCTCTGAGGGGAGGCA  479

seq1  CTAAGATGCAGATCTGTTACTAAGCAGCCAACAGCAGACCTGTGTCTTCA  550
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATGCAGATCTGTTACTAAGCAGCCAACAGCAGACCTGTGTCTTCA  529

seq1  GGAGAGAAGCAGCCGCAGGAGGCAGCCTGACTGGCAGACGAGTGACTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAGCAGCCGCAGGAGGCAGCCTGACTGGCAGACGAGTGACTGAT  579

seq1  TAAAAAACTTAGACTTACTCGGCAGAGGATCCATTAAAGTGTTTTGAGTA  650
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAACTTAGACTTACTCGGCAGAGGATCCATTAAAGTGTTTTGAGTA  629

seq1  GCAGACTGCAGTCATTCAAGGCTATTTTGAGGGATGTTAATCAGGCAACT  700
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  GCAGACTGCAGTCATTCAAGGCTATTGTGAGGGATGTTAATCCGGCAACT  679

seq1  GTACTTGATGGACTTCAGAGACGAGAGGGAGAAAGTACACCCTGGAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGATGGACTTCAGAGACGAGAGGGAGAAAGTACACCCTGGAGATC  729

seq1  TCGGGTGAGGGGGACCTGAGGGTACACACATCCAAGGGAACTTGGTTCTC  800
      | |||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGGGGTGAGGGGGACCTGAGGGCACACACATCCAAGGGAACTTGGTTCTC  779

seq1  TGCTGCTGAGGAAAAGCTATCGTGGGAATTGGGGCGTTCCTCTTTCCTCC  850
      ||||  ||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCTCATGAGGAAAAGCTATCGTGGGAATGGGGGCGTTCCTCTTTCCTCC  829

seq1  CCGAGTCAAGATCTCATCAGGTAGCTCAAGCTGGCATCAGATTTGCAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCAAGATCTCATCAGGTAGCTCAAGCTGGCATCAGATTTGCAATC  879

seq1  CTCCTGCCTCAGCCTCCCAAGTGTTGGGGTTATATGGGTCAGCACCACCA  950
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTCGTGCCTCAGCCTCCCAAGTGTTGGGGTTATATGGGTCAGCCCCACCA  929

seq1  TTCATTCCCAGCATGAAGAGACTTATTTGTCCCTGCGGCAACTGTAGCCG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCCAGCATGAAGAGACTTATTTGTCCCTGCGGCAACTGTAGCCG  979

seq1  CACGTATAGCATTGAGAACAGTACTAGTAGCCGTGAGGCACTGGGAAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTATAGCATTGAGAACAGTACTAGTAGCCGTGAGGCACTGGGAAAAA  1029

seq1  AAAAAGGAAGCTTGAGAGTAACTGTCATAGAGAATTC  1087
      |||||||||||||||||||||| ||||||||||||||
seq2  AAAAAGGAAGCTTGAGAGTAACGGTCATAGAGAATTC  1066