BAC Information

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BAC

Clone NameB6Ng01-143G02
Chromosome3 (Build37)
Map Location 118,550,981 - 118,551,954
singlet/doubletsinglet
Overlap geneDpyd
Upstream geneSnx7, LOC100043260
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143G02.bB6Ng01-143G02.g
ACCDH941329DH941330
length1,055981
definitionDH941329|Mus musculus domesticus DNA, BAC clone: B6Ng01-143G02, 5' end.DH941330|Mus musculus domesticus DNA, BAC clone: B6Ng01-143G02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagaactgagttcttctatgaaaccaattagaatatctactaac
tgaacttttctattccttccctgcccccaccccacccccagtttttttct
actcagattctgatagccaccactctactctgtactttcatgtaaactaa
cgttgtttcaattcagcatgtaaatgagatcattgactattgtctgtttt
tattcttgtttcatttcattaaaaactatgtccacttgtggttgcaaatg
gcaggagtatcatttttcaatagtggatatgttacccttgtgtgaatatg
ccatacattagttattcattcacctgattggacacttagatttttttccc
atctcttgcttgttgtgaatagcactttagttaacacagcagtatatagg
cccatcactgcactgatttcacatacatactcagatagatatgaattatt
gagattgctgggaaatatggaagtgccacactttacatttttaagggcta
ccacactgttctccacatcaactatactaactcctgtccaaccaacagta
taagaggcttttctcttcttcaaatcctttctaaaccttgttatatgtca
tacttaattttgttgaggggtgggggcacacacatccatgtgtatgttaa
aacatgtaggaagaggacagcaaaatacctgttagagcttccacactttg
ggttctgggatctaagcttggtcatcagacttggcagcaaggccctttac
tgctgagcaatcctacccgttcatcattcatcgctgatagtagtcactgt
aactagagtgaagtaatatctcacaggtggttttaggtttatttccctaa
tgattaattatgatttgttttccatctgctgtccgtttgcaagtttccta
tcacgaatgtctatttataacaagcgaagcatcatccctctgcagaatct
tttagtgcacagcagtgtctgcactcttcatagagcactcccatcatttc
cgctggctacgtgtctctcttttagctgacacatgatgatttcatctaga
aacaa
gaattcaaggcccacacctaaacatgataaaagcaatctacggcaaacca
gttgtcaacatcaaagtaaagggtgagaatctggaagcaatcccactaaa
atcaggaactagacaaggctgcccactttctccatacctattcaacatag
taattgaagtccttgccagagcaattcgacaacaaaaggagattaagggg
atacaattggaaaggaagaagtcagaacatcactttttgcagatgatatg
atagtatttataatgacccaaaaattccaccagagaacacctaaacctga
taaaccgaatcagtgaagtagctggatataaaattaactcaaacaagtca
atagcctttctctacacaaaggataaacaggctgagaaagaaattaggga
aacaacacccttcacaatagtcacaaataatataaaataccttggagtta
ctctaactaaggaagtgaaagatctgtatgataagaacttcaagtctctg
aagaaaaaaattaaagaaggtctcagaagatggaaagatcttccatgctc
atagactggcagtatcaatatagtaaaaaatggctatcttgccaaaagca
atctacagatttcaatgcaatccccatcaaactttacaacccatttcttc
aatgaattagaagggcaatctgcaaattccttcttgaataacaaaaaaaa
aacctaggatagcaaaaaactcttctcaatgataaaagaacctctggtgg
gatcaccattcctgacctaagctgtattcagaagcaatttgtgataaaaa
ctgcatggttctggaattaccgacagaaaaataaaccaatggataagaat
tggagaccctgaaatgaacccccctaactttggtcccttgattctttgac
agggaactaaaaccttccaggggaaaaagaaagctttttcaacaaatgga
cctacactaaccggcgggtaacctgttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118550981_118551954
seq2: B6Ng01-143G02.b_144_1100

seq1  CTACTCAGATTCTGATAGCCACCACTCTACTCTGTACTTTCATGTAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCAGATTCTGATAGCCACCACTCTACTCTGTACTTTCATGTAAACT  50

seq1  AACGTTGTTTCAATTCAGCATGTAAATGAGATCATTGACTATTGTCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTGTTTCAATTCAGCATGTAAATGAGATCATTGACTATTGTCTGTT  100

seq1  TTTATTCTTGTTTCATTTCATTAAAAACTATGTCCACTTGTGGTTGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTTGTTTCATTTCATTAAAAACTATGTCCACTTGTGGTTGCAAA  150

seq1  TGGCAGGAGTATCATTTTTCAATAGTGGATATGTTACCCTTGTGTGAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGAGTATCATTTTTCAATAGTGGATATGTTACCCTTGTGTGAATA  200

seq1  TGCCATACATTAGTTATTCATTCACCTGATTGGACACTTAGATTTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATACATTAGTTATTCATTCACCTGATTGGACACTTAGATTTTTTTC  250

seq1  CCATCTCTTGCTTGTTGTGAATAGCACTTTAGTTAACACAGCAGTATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTTGCTTGTTGTGAATAGCACTTTAGTTAACACAGCAGTATATA  300

seq1  GGCCCATCACTGCACTGATTTCACATACATACTCAGATAGATATGAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATCACTGCACTGATTTCACATACATACTCAGATAGATATGAATTA  350

seq1  TTGAGATTGCTGGGAAATATGGAAGTGCCACACTTTACATTTTTAAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTGCTGGGAAATATGGAAGTGCCACACTTTACATTTTTAAGGGC  400

seq1  TACCACACTGTTCTCCACATCAACTATACTAACTCCTGTCCAACCAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACTGTTCTCCACATCAACTATACTAACTCCTGTCCAACCAACAG  450

seq1  TATAAGAGGCTTTTCTCTTCTTCAAATCCTTTCTAAACCTTGTTATATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGGCTTTTCTCTTCTTCAAATCCTTTCTAAACCTTGTTATATGT  500

seq1  CATACTTAATTTTGTTGAGGGGTGGGGGCACACACATCCATGTGTATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTAATTTTGTTGAGGGGTGGGGGCACACACATCCATGTGTATGTT  550

seq1  AAAACATGTAGGAAGAGGACAGCAAAATACCTGTTAGAGCTTCCACACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGTAGGAAGAGGACAGCAAAATACCTGTTAGAGCTTCCACACTT  600

seq1  TGGGTTCTGGGATCTAAGCTTGGTCATCAGACTTGGCAGCAAGGCCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTGGGATCTAAGCTTGGTCATCAGACTTGGCAGCAAGGCCCTTT  650

seq1  ACTGCTGAGCAATCCTACCCGTTCATCATTCATCGCTGATAGTAGTCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAGCAATCCTACCCGTTCATCATTCATCGCTGATAGTAGTCACT  700

seq1  GTAACTAGAGTGAAGTAATATCTCACAGGTGGTTTTAGGTTTATTTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTAGAGTGAAGTAATATCTCACAGGTGGTTTTAGGTTTATTTCCCT  750

seq1  AATGATTAATTATGATTTGTTTTCCATCTGCTGTCCGTTTGCAAGGTTTC  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATGATTAATTATGATTTGTTTTCCATCTGCTGTCCGTTTGCAA-GTTTC  799

seq1  CTATCACGAATGTCTATTTATAACAAGCGAAGCATCATCCCTCTTGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTATCACGAATGTCTATTTATAACAAGCGAAGCATCATCCCTC-TGCAGA  848

seq1  ATCTTTTAGTGCACAGCAGTGTTCTGCACTCTTCATAGAGGCACTCCCAA  900
      ||||||||||||||||||||| ||||||||||||||||| ||||||||| 
seq2  ATCTTTTAGTGCACAGCAGTG-TCTGCACTCTTCATAGA-GCACTCCCA-  895

seq1  TTCATTTCCCGCTGGCTACGTGTTCCTCCTCTTTTTTAGGCCTTGACACA  950
       |||||| |||||||||||||||     |||| ||||||    |||||||
seq2  -TCATTT-CCGCTGGCTACGTGT-----CTCTCTTTTAG---CTGACACA  935

seq1  TTGATGATTTTCATCTAGAAACAA  974
       |||||| ||||||||||||||||
seq2  -TGATGA-TTTCATCTAGAAACAA  957