BAC Information

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BAC

Clone NameB6Ng01-143K09
Chromosome3 (Build37)
Map Location 54,948,615 - 55,011,590
singlet/doubletdoublet
Overlap geneA730037C10Rik, Sohlh2
Upstream geneTrpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20
Downstream geneDclk1, Mab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143K09.bB6Ng01-143K09.g
ACCDH941529DH941530
length1,183331
definitionDH941529|Mus musculus domesticus DNA, BAC clone: B6Ng01-143K09, 5' end.DH941530|Mus musculus domesticus DNA, BAC clone: B6Ng01-143K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,948,615 - 54,949,803)(55,011,260 - 55,011,590)
sequence
gaattcagtctggtgttcaaggaatggagacaggcacaatgtcatgatcg
attgtattgcaggctggggttggagcttagtagtagagcattgtcaaagc
cttgagctcaaccaatatcaaaaggaaggcttattttactgtgacctgtg
tgagatggctgagagatagctcttctagaggacccaagtttaaatcccag
cacccacatagaacagctccaaccacctgtaatgacagtcccaagggatt
aaacagcctcttctgacctcctcatttacctacatgcatgcgaaatacac
acacacacacacacacacacacacacacacacacacacacacacgcctac
ataaataaaaatgcatattagtttaccatgggatcctaaacacaaagtca
ttcaggaagaatgtggagtaaccagagggtgccacagactgcagaaagaa
tgcagtaggagtggaggctgagattaacaaaggagactcagtgtgaaggc
tgcttgtacaataatgaatccgaatccgtattttgcagtattaaagcttc
caattttattgctaagttaatcttagaaagttatggtaactattagcaac
tgtggttacaatcacacatcctcttcagtccttacaacccttaccacctc
tctcctatgcttactttcttcctccctacctccctccttccctctttctc
tccccctccctcccttccttcatttcttccttccttccttttttattatc
tttaatctttgtttacagtccagtcattatccctgtcccagtccaccgtc
tgacagtttctcattccattcctccttcccatctccaagaggatgtcctt
acccctccacacactctccaaccctgccagacctccccattccctgggtc
acaagtctctcaagggtttagtacgtctctctcactgaagccagaccaag
cagtcctctgctgtatgtgtgggggcctcatatcagctagtgcatgttgt
ctgggtggtgactcatgtctgagagatctggggtgtccagttaagtgaag
actgctggtcttccttcactcatgctcaatttcaactgggggcgttaccc
ctcaatcttcagagagaaaaagagcatcctccaaagaatctaacccccca
acgctcatacctcatgggatctggatctcctct
agagatcgggctgtgctggggacgcgagtcttatacagatcctcaataga
gctctcggaaacagagcctggctgacctgtaacaggaaggaaaacaggaa
tctgtgagcactgtgcacacctctgtggctctgactaccgtattggaaat
gcatggctctctatctcatttcctcatattgacacagctactgcacttaa
ccactggtggataacccagtgcctattcctgtaacagctcgatacaaaca
ctgcacgttagcattcgtgtatctcaagagatttcagaggacaggcagtg
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_54948615_54949803
seq2: B6Ng01-143K09.b_48_1230

seq1  GAATTCAGTCTGGTGTTCAAGGAATGGAGACAGGCACAATGTCATGATCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTGGTGTTCAAGGAATGGAGACAGGCACAATGTCATGATCG  50

seq1  ATTGTATTGCAGGCTGGGGTTGGAGCTTAGTAGTAGAGCATTGTCAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTGCAGGCTGGGGTTGGAGCTTAGTAGTAGAGCATTGTCAAAGC  100

seq1  CTTGAGCTCAACCAATATCAAAAGGAAGGCTTATTTTACTGTGACCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTCAACCAATATCAAAAGGAAGGCTTATTTTACTGTGACCTGTG  150

seq1  TGAGATGGCTGAGAGATAGCTCTTCTAGAGGACCCAAGTTTAAATCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGGCTGAGAGATAGCTCTTCTAGAGGACCCAAGTTTAAATCCCAG  200

seq1  CACCCACATAGAACAGCTCCAACCACCTGTAATGACAGTCCCAAGGGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACATAGAACAGCTCCAACCACCTGTAATGACAGTCCCAAGGGATT  250

seq1  AAACAGCCTCTTCTGACCTCCTCATTTACCTACATGCATGCGAAATACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCCTCTTCTGACCTCCTCATTTACCTACATGCATGCGAAATACAC  300

seq1  ACACACACACACACACACACACACACACACACACACACACACACGCCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACACGCCTAC  350

seq1  ATAAATAAAAATGCATATTAGTTTACCATGGGATCCTAAACACAAAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAAAATGCATATTAGTTTACCATGGGATCCTAAACACAAAGTCA  400

seq1  TTCAGGAAGAATGTGGAGTAACCAGAGGGTGCCACAGACTGCAGAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAAGAATGTGGAGTAACCAGAGGGTGCCACAGACTGCAGAAAGAA  450

seq1  TGCAGTAGGAGTGGAGGCTGAGATTAACAAAGGAGACTCAGTGTGAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAGGAGTGGAGGCTGAGATTAACAAAGGAGACTCAGTGTGAAGGC  500

seq1  TGCTTGTACAATAATGAATCCGAATCCGTATTTTGCAGTATTAAAGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTACAATAATGAATCCGAATCCGTATTTTGCAGTATTAAAGCTTC  550

seq1  CAATTTTATTGCTAAGTTAATCTTAGAAAGTTATGGTAACTATTAGCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTATTGCTAAGTTAATCTTAGAAAGTTATGGTAACTATTAGCAAC  600

seq1  TGTGGTTACAATCACACATCCTCTTCAGTCCTTACAACCCTTACCACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTACAATCACACATCCTCTTCAGTCCTTACAACCCTTACCACCTC  650

seq1  TCTCCTATGCTTACTTTCTTCCTCCCTACCTCCCTCCTTCCCTCTTTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTATGCTTACTTTCTTCCTCCCTACCTCCCTCCTTCCCTCTTTCTC  700

seq1  TCCCCCTCCCTCCCTTCCTTCATTTCTTCCTTCCTTCCTTTTTTATTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTCCCTCCCTTCCTTCATTTCTTCCTTCCTTCCTTTTTTATTATC  750

seq1  TTTAATCTTTGTTTACAGTCCAGTCATTATCCCTGTCCCAGTCCACCGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTTTGTTTACAGTCCAGTCATTATCCCTGTCCCAGTCCACCGTC  800

seq1  TGACAGTTTCTCATTCCATTCCTCCTTCCCATCTCCAAGAGGATGTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTTTCTCATTCCATTCCTCCTTCCCATCTCCAAGAGGATGTCCTT  850

seq1  ACCCCTCCACACACTCTCCAACCCTGCCAGACCTCCCCATTCCCTGGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCCACACACTCTCCAACCCTGCCAGACCTCCCCATTCCCTGGGTC  900

seq1  ACAAGTCTCTCAAGGGTTTAGTACGTCTTCTCTCACTGAAGCCAGACCAA  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACAAGTCTCTCAAGGGTTTAGTACGTC-TCTCTCACTGAAGCCAGACCAA  949

seq1  GCAGTCCTCTGCTGTATGTGTTGGGGGCCTCATATCAGCTAGTGCATGTT  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCAGTCCTCTGCTGTATGTG-TGGGGGCCTCATATCAGCTAGTGCATGTT  998

seq1  GTCTGGTTGGTGACTCAATGTCTGAGAGATCTTGGGTGTCCAGGTTAGTT  1050
      |||||| ||||||||| ||||||||||||||| |||||||||| | ||| 
seq2  GTCTGGGTGGTGACTC-ATGTCTGAGAGATCTGGGGTGTCCAGTTAAGTG  1047

seq1  GAGACTGCTGGTCTTCCTTCAACTCATGCTCACTTTCAACT-GGTGCGTT  1099
       ||||||||||||||||||| ||||||||||| |||||||| || |||||
seq2  AAGACTGCTGGTCTTCCTTC-ACTCATGCTCAATTTCAACTGGGGGCGTT  1096

seq1  TACCCTC-ATCTTC-CAGAGAGAAAGAGCAATCCTCCAAAGAATTCTAAC  1147
        ||||| ||||||  ||||| ||||||| ||||||||||||| ||||||
seq2  ACCCCTCAATCTTCAGAGAGAAAAAGAGC-ATCCTCCAAAGAA-TCTAAC  1144

seq1  ACCACCAACGCTTCATACTTCACTGGATCTGATTCCTCCTCT  1189
       || ||||||| |||||| |||  |||||||  | |||||||
seq2  -CCCCCAACGC-TCATACCTCATGGGATCTGGAT-CTCCTCT  1183

seq1: chr3_55011260_55011590
seq2: B6Ng01-143K09.g_74_404 (reverse)

seq1  CACACACACACACACACACACACACACACACCACTGCCTGTCCTCTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACCACTGCCTGTCCTCTGAAA  50

seq1  TCTCTTGAGATACACGAATGCTAACGTGCAGTGTTTGTATCGAGCTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGAGATACACGAATGCTAACGTGCAGTGTTTGTATCGAGCTGTTA  100

seq1  CAGGAATAGGCACTGGGTTATCCACCAGTGGTTAAGTGCAGTAGCTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATAGGCACTGGGTTATCCACCAGTGGTTAAGTGCAGTAGCTGTGT  150

seq1  CAATATGAGGAAATGAGATAGAGAGCCATGCATTTCCAATACGGTAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGAGGAAATGAGATAGAGAGCCATGCATTTCCAATACGGTAGTCA  200

seq1  GAGCCACAGAGGTGTGCACAGTGCTCACAGATTCCTGTTTTCCTTCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACAGAGGTGTGCACAGTGCTCACAGATTCCTGTTTTCCTTCCTGT  250

seq1  TACAGGTCAGCCAGGCTCTGTTTCCGAGAGCTCTATTGAGGATCTGTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTCAGCCAGGCTCTGTTTCCGAGAGCTCTATTGAGGATCTGTATA  300

seq1  AGACTCGCGTCCCCAGCACAGCCCGATCTCT  331
      |||||||||||||||||||||||||||||||
seq2  AGACTCGCGTCCCCAGCACAGCCCGATCTCT  331