BAC Information

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BAC

Clone NameB6Ng01-143O08
Chromosome3 (Build37)15 (Build37)
Map Location 131,535,471 - 131,536,61329,318,986 - 29,319,376
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
Downstream geneOlfr375-ps1, Dkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143O08.bB6Ng01-143O08.g
ACCDH941712DH941713
length1,194934
definitionDH941712|Mus musculus domesticus DNA, BAC clone: B6Ng01-143O08, 5' end.DH941713|Mus musculus domesticus DNA, BAC clone: B6Ng01-143O08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(131,535,471 - 131,536,613)(29,318,986 - 29,319,376)
sequence
gaattctttgtatgtcctagatattaatcctctttcaggtgataactggc
aaaggctctcaccgcctgggtctcttttttactctgttgcttccttagct
gtacagagctttgatttttatgaggtctcaattatcaaatgtgggcatta
attccttggcaaagggaaacttgtttagtaactcttttcctattcctcta
tcttgtaggaaccacgattttagtgtttgggattcaaattgaggtctttg
gtcccttttggatctaatttctgtactgggtgcttgatattggtccaact
tcatccttctgtatgtagacactgactttctcagcaccatgttgacacta
ccaactttctctggtgtatgtttcttgcctccttggcaaatatcagatgc
ttaaagttataagtagtcatgtttgggtcttctatttttcccattgattt
acgtgtctatgtttttgtgatagaaaaagttttattatttattactgcag
ctctattaaaatatcttgaagcatggaatagtaatttcttcagtcttctt
ttctattggaattgcttggttatcattttatagttcagggatgtggttgt
atcttttctaagttccttgaattctttggtaaagtttatgatttttcttg
taaattctgtttcctgggatttatataaacagcactagggaacactttta
caggactaatcggtctgatttgaacttctttctttgtttgtttgtctgat
gtgataatctggccttccttagtctgggcaagtggaagtgcatagcctga
aataggccaagtataggtaggagatgagctattgaattgaatcatggaag
ggtgactccaaatccgggatctagagctaggctaggaaagggggctcaca
ggtctagactaggcttgtgggtgtgtagatcatgactggttggagtaaaa
cccctgtgtaatattgaaataacagctttatctgtgagtctgatgccaat
tgttatgatgtcgggggtcaaaccaactttttcaaatagattgccaatga
atgaaagaaaaccagtccaaaccttatagatttcactccagtgatgtccg
ttagtaaggaaccgaagggaaaattggtattttcccctctgacctattta
cctatatactactattttttgggtcaatgatcaacatccttcct
gaattcataagtactgtcttctccagaagaccctgtttgtcccagtcccg
gctgacctctgacttacaatctttccaacctttctttttctatgatccct
aggcattgagggaaagggtaggatgtcaatgtctcatttacacagatgca
cactccacaagtatttattctctgctcttcaaccagctgtgagtttctag
gctgacttccaactactgtacaaggaaacttctttaatgagggctgagag
ctacgctaatctataaatgaagagatatgaatttagaaggcagtttcact
agtgtaatttttttttcattttttcaagagattttattttactttttttt
taaattaggtattttcctcgtttacatttccaatgctatctcaaaagtcc
cccatacccacccccccaatcccctacccacccactccccctttttggcc
ctggcgttcccctgtactggggcatataaagtttgcaagtccaaagggcc
tctctttccagtgatggctgactaggccatcttttgatacatatgcagct
agagacaagctctggggtactggttagttcatattgttgttccacatata
gggttgcagttccctttagctccttgggtactttctctagctcctccatt
gggggctgtgtgacccatccaatagctgactgtgagcatccacttctgtg
taattcttaatatgagaaaccagactcatattctctaacattgggaaaaa
ggaagaacatcttctcttaccatttctattcaacatcatactagaaaatc
tctagtcttatactctaagaaaaataatttaaatgaagtttaaaggtata
tgaagggagaaatcaaattctttattgcagatatatgattattcatatat
aatattagaaatattgaccaaaatgaaaaaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_131535471_131536613
seq2: B6Ng01-143O08.b_124_1241

seq1  TTTTACTCTGTTGCTTCCTTAGCTGTACAGAGCTTTGATTTTTATGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCTGTTGCTTCCTTAGCTGTACAGAGCTTTGATTTTTATGAGGT  50

seq1  CTCAATTATCAAATGTGGGCATTAATTCCTTGGCAAAGGGAAACTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTATCAAATGTGGGCATTAATTCCTTGGCAAAGGGAAACTTGTTT  100

seq1  AGTAACTCTTTTCCTATTCCTCTATCTTGTAGGAACCACGATTTTAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTCTTTTCCTATTCCTCTATCTTGTAGGAACCACGATTTTAGTGT  150

seq1  TTGGGATTCAAATTGAGGTCTTTGGTCCCTTTTGGATCTAATTTCTGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTCAAATTGAGGTCTTTGGTCCCTTTTGGATCTAATTTCTGTAC  200

seq1  TGGGTGCTTGATATTGGTCCAACTTCATCCTTCTGTATGTAGACACTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCTTGATATTGGTCCAACTTCATCCTTCTGTATGTAGACACTGAC  250

seq1  TTTCTCAGCACCATGTTGACACTACCAACTTTCTCTGGTGTATGTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGCACCATGTTGACACTACCAACTTTCTCTGGTGTATGTTTCTT  300

seq1  GCCTCCTTGGCAAATATCAGATGCTTAAAGTTATAAGTAGTCATGTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTTGGCAAATATCAGATGCTTAAAGTTATAAGTAGTCATGTTTGG  350

seq1  GTCTTCTATTTTTCCCATTGATTTACGTGTCTATGTTTTTGTGATAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTATTTTTCCCATTGATTTACGTGTCTATGTTTTTGTGATAGAAA  400

seq1  AAGTTTTATTATTTATTACTGCAGCTCTATTAAAATATCTTGAAGCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTATTATTTATTACTGCAGCTCTATTAAAATATCTTGAAGCATGG  450

seq1  AATAGTAATTTCTTCAGTCTTCTTTTCTATTGGAATTGCTTGGTTATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAATTTCTTCAGTCTTCTTTTCTATTGGAATTGCTTGGTTATCAT  500

seq1  TTTATAGTTCAGGGATGTGGTTGTATCTTTTCTAAGTTCCTTGAATTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTTCAGGGATGTGGTTGTATCTTTTCTAAGTTCCTTGAATTCTT  550

seq1  TGGTAAAGTTTATGATTTTTCTTGTAAATTCTGTTTCCTGGGATTTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAGTTTATGATTTTTCTTGTAAATTCTGTTTCCTGGGATTTATAT  600

seq1  AAACAGCACTAGGGAACACTTTTACAGGACTAATCGGTCTGATTTGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCACTAGGGAACACTTTTACAGGACTAATCGGTCTGATTTGAACT  650

seq1  TCTTTCTTTGTTTGTTTGTCTGATGTGATAATCTGGCCTTCCTTAGTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTGTTTGTTTGTCTGATGTGATAATCTGGCCTTCCTTAGTCTG  700

seq1  GGCAAGTGGAAGTGCATAGCCTGAAATAGGCCAAGTATAGGTAGGAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTGGAAGTGCATAGCCTGAAATAGGCCAAGTATAGGTAGGAGATG  750

seq1  AGCTATTGAATTGAATCATGGAAGGGTGACTCCAAAATCCGGGATCTAGA  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCTATTGAATTGAATCATGGAAGGGTGACTCC-AAATCCGGGATCTAGA  799

seq1  GCTAGGCTAGGAAAGGGGGCTCACAGGTCTAGAACTAGGCTTGTGGGTGT  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCTAGGCTAGGAAAGGGGGCTCACAGGTCTAG-ACTAGGCTTGTGGGTGT  848

seq1  GTAGATCATGACTGGTTGGAGTAAAAACCCCTGTGTAATATTGAAAATAA  900
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  GTAGATCATGACTGGTTGGAGT-AAAACCCCTGTGTAATATTG-AAATAA  896

seq1  CAGCTTTTATCTGTGAGTCTGATGCCAATTGTTATGATGTTCGGGGGGTC  950
      |||| |||||||||||||||||||||||||||||||||||   |||||||
seq2  CAGC-TTTATCTGTGAGTCTGATGCCAATTGTTATGATGT--CGGGGGTC  943

seq1  AAAACCAACTTTTTTCAAATAGATTGCAAAATGAAATGAAAAGAAAACAA  1000
       |||||||| |||||||||||||||||  |||| |||| ||||||||| |
seq2  -AAACCAAC-TTTTTCAAATAGATTGC-CAATG-AATG-AAAGAAAACCA  988

seq1  GTCAAACACTTATTAGGATTCCAACTCAAGTGATGTCTG-TAGTAAAGAC  1049
      ||| ||  |||||   |||| | |||| ||||||||| | |||||| || 
seq2  GTCCAAACCTTAT--AGATTTC-ACTCCAGTGATGTCCGTTAGTAAGGAA  1035

seq1  ACGAAAGGAAAAATTGTATTTTTTCCCTCTGACCTTAATTTACCCTAATT  1099
       |||| |||||| | ||| |||| |||||||||||  |||||||   || 
seq2  CCGAAGGGAAAATTGGTA-TTTTCCCCTCTGACCT--ATTTACC--TATA  1080

seq1  TACT--CATTTTTTGTGGTCAATAATGGATACAAACATCCCTTCCT  1143
      ||||   |||||||| ||||||| ||       ||||| |||||||
seq2  TACTACTATTTTTTG-GGTCAATGAT------CAACAT-CCTTCCT  1118

seq1: chr15_29318986_29319376
seq2: B6Ng01-143O08.g_376_769

seq1  TTTTTTTTTCATTTTT--------TTTTATTTTTCTTTCCATTTTTT--A  40
      ||||||||||||||||        ||||||||| ||||   ||||||  |
seq2  TTTTTTTTTCATTTTTTCAAGAGATTTTATTTTACTTT---TTTTTTAAA  47

seq1  TTAGGTATTTAGCTCATTTACATTTCCAATACTATACCAAAAGTCCCCCA  90
      ||||||||||  ||| |||||||||||||| ||||  |||||||||||||
seq2  TTAGGTATTTTCCTCGTTTACATTTCCAATGCTATCTCAAAAGTCCCCCA  97

seq1  TGCCCACCCACCCCCACTCCCCTACCCGCCCACTCCCCCTTTTTGGCCCT  140
      | ||||||  |||||| |||||||||| ||||||||||||||||||||||
seq2  TACCCACC--CCCCCAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCT  145

seq1  GGCGTTCCCCTGTTCTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTC  190
      ||||||||||||| ||||||||||||||||||||  |||||| |||||||
seq2  GGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAAAGGGCCTC  195

seq1  TCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAG  240
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTTTCCAGTGATGGCTGACTAGGCCATCTTTTGATACATATGCAGCTAG  245

seq1  AGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGATCCACCTATA  290
      || ||  ||||| |||||||||||||||||||| ||||| ||||| ||||
seq2  AGACA--AGCTCTGGGGTACTGGTTAGTTCATATTGTTGTTCCACATATA  293

seq1  GGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTTTCTAGCTCCTCCATT  340
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  GGGTTGCAGTTCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATT  343

seq1  GGGAGCCCTGTGATCTATCCATTAGCTGACTGTGAGCATCCACTTCTGTG  390
      ||| ||  ||||| | ||||| ||||||||||||||||||||||||||||
seq2  GGGGGCTGTGTGACCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTG  393

seq1  T  391
      |
seq2  T  394