BAC Information

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BAC

Clone NameB6Ng01-143O22
Chromosome3 (Build37)
Map Location 78,630,071 - 78,765,601
singlet/doubletdoublet
Overlap geneLOC383883, LOC100041748, LOC100041716
Upstream geneEG626461, LOC667526, LOC626479, LOC100041691
Downstream geneLOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143O22.bB6Ng01-143O22.g
ACCDH941740DH941741
length1,1541,088
definitionDH941740|Mus musculus domesticus DNA, BAC clone: B6Ng01-143O22, 5' end.DH941741|Mus musculus domesticus DNA, BAC clone: B6Ng01-143O22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,630,071 - 78,631,237)(78,764,481 - 78,765,601)
sequence
gaattctcagccacaatgttgcattaatacctacaagtttttaaaccaat
cttgacttgctttttgcctctctgtgcaacggtctgtactttcttaacac
taagtagactcagcagtaaactttgaacgctgaccttccaaatttgattc
ttattcaagacttgatcttcctagggagaaaaaaaaaaaaatgaaaggtc
tgagtattttatcttgtaccttattaaaccagggaagggaagtagaagca
aaaacgttcaacggtgcctgattgctaaacagtggggaatgcagaaactg
ctaaataaaacaagtcacacgttgggccaggaaaaaaaaaaaaaaagctg
aagcaatcatttaaagctgcacaccgctgtgttttatttaatgctgaggg
gtgtttacaatgctgtgatttcctgagaaaggttaatccagatgagtaag
aggagcagtgtatgaaactgtttcccaccagctctttgcagtgaatattt
tagtaaccattgcgaatccatgtcagctgggcagccatcaaatgaaacac
gaaagaaagcaagtgccgccccggagaatgaattttgatttaacatcgag
gcagaggcattttcagtgccctctgccgcggtgatgatggggtaggaaat
agttttcatcacagccaagtgctttttctgagctcctgcatgctcaactc
gctgtcctatttgtgaacttcggaggtgggaggagtgaacgactctactt
ttctcctcctgctttcatttactttcttttttccccctggagcagcaaac
tacagtagcaattctctccttggaaaattttaccttacatctgcatcaag
ctatgtcaaaagctatttcaatattctaagcagctccaccaagggcacat
gtttccgtcttctttccttccctagaaagtatctctgtattgatccctct
aacgccttgagcaaataaaaataagagaaaagaattctgtggggagagaa
atgcaagatttcccgaagccctctttcttgctacattccctcagaaacat
cgagaaggcaagagcatatggaaactcaaatcatcctcctcctctcaagg
tcatgctgatagcagcaaacatttggttcctgctcggaactcaggaacaa
agat
gaattctctaggacaacactcaggtgctatacatcaagaaatgtatgtag
gaaatatggagtcatcttggaaggttgcatcacacaagggattttttccc
cccaagggtaaaagtcttttgcatttcctctctgcagaattctctttaat
attctttggcttctttccacatatttcgaaaaatagcaagatacgatact
gcacacatgagtgcatgaggaacgaagcgaagggatagatcttgggctcg
tttcagctttcagagaacaaccctgccttttcccatcgagaagtagctgt
gaggggctgcagtgttgtggcatgccccatttgctctctggacagtcttt
gattccaggctccttcccttgttgctcaagaccttaaggggtctaagaac
tgtttttccttactaggaatcaagttgaggttttcatgagtgctggatgt
tccttgccagttagcttctcccctgtgcccgtctaaggtctgcatgagaa
gccctactaagcagatctgttccaatacagaggggctcaataccacaatc
cttatctagatcaaaccttccattctattccttgtaggtttgaattatgt
tacactgtgatggtcctaagcctgtctcagcactccagggtcatctacca
cctttaaggctgacaactgctatgttagccatgcttctcaattcccctct
gccctgtagcacaacatgttcgcaggtgtctcggatcaaaattgctttct
ttagtgggaggagagggacatctcctgcctaccgccaagtgtcatgaata
ttgggttggtttatacaccagccattatggtgaaagtcaggcttgtaatg
ttatcttttatttttgagatatatatactatattacatcatatctttctc
cttcccttcttccctcaaaccctccacacacccttctgctctctttcaac
tcatgcatctattctcatatgatatagctcttctctctcactaataataa
gcacatctactcgtattatttgtgtacatttcatggcgatgatgaacaca
tcattgtgcttcttcctgaggagactgtttctccactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_78630071_78631237
seq2: B6Ng01-143O22.b_47_1200

seq1  GAATTCTCAGCCACAATGTTGCATTAATACCTACAAGTTTTTAAACCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCCACAATGTTGCATTAATACCTACAAGTTTTTAAACCAAT  50

seq1  CTTGACTTGCTTTTTGCCTCTCTGTGCAACGGTCTGTACTTTCTTAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTTGCTTTTTGCCTCTCTGTGCAACGGTCTGTACTTTCTTAACAC  100

seq1  TAAGTAGACTCAGCAGTAAACTTTGAACGCTGACCTTCCAAATTTGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGACTCAGCAGTAAACTTTGAACGCTGACCTTCCAAATTTGATTC  150

seq1  TTATTCAAGACTTGATCTTCCTAGGGAGAAAAAAAAAAAAATGAAAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAAGACTTGATCTTCCTAGGGAGAAAAAAAAAAAAATGAAAGGTC  200

seq1  TGAGTATTTTATCTTGTACCTTATTAAACCAGGGAAGGGAAGTAGAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATTTTATCTTGTACCTTATTAAACCAGGGAAGGGAAGTAGAAGCA  250

seq1  AAAACGTTCAACGGTGCCTGATTGCTAAACAGTGGGGAATGCAGAAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTTCAACGGTGCCTGATTGCTAAACAGTGGGGAATGCAGAAACTG  300

seq1  CTAAATAAAACAAGTCACACGTTGGGCCAGGAAAAAAAAAAAAAAAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAAAACAAGTCACACGTTGGGCCAGGAAAAAAAAAAAAAAAGCTG  350

seq1  AAGCAATCATTTAAAGCTGCACACCGCTGTGTTTTATTTAATGCTGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATCATTTAAAGCTGCACACCGCTGTGTTTTATTTAATGCTGAGGG  400

seq1  GTGTTTACAATGCTGTGATTTCCTGAGAAAGGTTAATCCAGATGAGTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTACAATGCTGTGATTTCCTGAGAAAGGTTAATCCAGATGAGTAAG  450

seq1  AGGAGCAGTGTATGAAACTGTTTCCCACCAGCTCTTTGCAGTGAATATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGTGTATGAAACTGTTTCCCACCAGCTCTTTGCAGTGAATATTT  500

seq1  TAGTAACCATTGCGAATCCATGTCAGCTGGGCAGCCATCAAATGAAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACCATTGCGAATCCATGTCAGCTGGGCAGCCATCAAATGAAACAC  550

seq1  GAAAGAAAGCAAGTGCCGCCCCGGAGAATGAATTTTGATTTAACATCGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGCAAGTGCCGCCCCGGAGAATGAATTTTGATTTAACATCGAG  600

seq1  GCAGAGGCATTTTCAGTGCCCTCTGCCGCGGTGATGATGGGGTAGGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCATTTTCAGTGCCCTCTGCCGCGGTGATGATGGGGTAGGAAAT  650

seq1  AGTTTTCATCACAGCCAAGTGCTTTTTCTGAGCTCCTGCATGCTCAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCATCACAGCCAAGTGCTTTTTCTGAGCTCCTGCATGCTCAACTC  700

seq1  GCTGTCCTATTTGTGAACTTCGGAGGTGGGAGGAGTGAACGACTCTACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTATTTGTGAACTTCGGAGGTGGGAGGAGTGAACGACTCTACTT  750

seq1  TTCTCCTCCTGCTTTCATTTACTTTCTTTTTTCCCCCTGGAGCAGCAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCCTGCTTTCATTTACTTTCTTTTTTCCCCCTGGAGCAGCAAAC  800

seq1  TACAGTAGCAATTCTCTCCTTGGAGAATTTTACCTTACATCTGCATCAAG  850
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TACAGTAGCAATTCTCTCCTTGGAAAATTTTACCTTACATCTGCATCAAG  850

seq1  CTATGTCAAAAGCTA-TTCAATATTCTAAGCAGCTCCACC-AGGGCACAT  898
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  CTATGTCAAAAGCTATTTCAATATTCTAAGCAGCTCCACCAAGGGCACAT  900

seq1  GTTTCCGTCTTCTTTCCTTCCCTAGAAAGTATCTTCTGTATTGATCCCTC  948
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTTTCCGTCTTCTTTCCTTCCCTAGAAAGTATC-TCTGTATTGATCCCTC  949

seq1  TAACGCCTTGGAGCCAAATAAAAATAAGAGAAAAGGAATTCTGTGGGGAG  998
      ||||||||| ||| |||||||||||||||||||| |||||||||||||||
seq2  TAACGCCTT-GAG-CAAATAAAAATAAGAGAAAA-GAATTCTGTGGGGAG  996

seq1  AGAAATGC-AGATTTCCCGAGCCCCTC-TTCTTGCCTACATTCCCTTCCA  1046
      |||||||| |||||||||||  ||||| |||||| |||||||||||  ||
seq2  AGAAATGCAAGATTTCCCGAAGCCCTCTTTCTTG-CTACATTCCCT--CA  1043

seq1  G-AACATCAGAGAAGGC-AGAGCCATATTGGAAACTCAATTTCTTTCTTC  1094
      | |||||| |||||||| |||| |||| |||||||||||  || | ||  
seq2  GAAACATC-GAGAAGGCAAGAG-CATA-TGGAAACTCAA-ATCATCCT--  1087

seq1  CTTCCTCTCCAAGGCCATGCTGATAGCAAGCAAACATTTGTGTTCCTGCC  1144
      | |||||| ||||| |||||||||||| |||||||||||| |||||||| 
seq2  CCTCCTCT-CAAGGTCATGCTGATAGC-AGCAAACATTTG-GTTCCTGC-  1133

seq1  TTCAGAACCTCAGGACCAAAGAT  1167
       || ||| ||||||| |||||||
seq2  -TCGGAA-CTCAGGAACAAAGAT  1154

seq1: chr3_78764481_78765601
seq2: B6Ng01-143O22.g_69_1156 (reverse)

seq1  GAGTGGGAGAAACAGTCTTCCTCAGAGAG-AGCACAATGATTGGTTGTTC  49
      |||| |||||||||||| |||||||  || |||||||||||    |||||
seq2  GAGT-GGAGAAACAGTC-TCCTCAGGAAGAAGCACAATGAT---GTGTTC  45

seq1  AAATCCAAATCGCATTGAAAATGTACACAAATAATACCGAGTAGGATGTG  99
        |||   |||||  || |||||||||||||||||| |||||| ||||||
seq2  --ATC---ATCGCCATG-AAATGTACACAAATAATA-CGAGTA-GATGTG  87

seq1  CTTATTTATTTAAGTGAGGAGAG-AGAGCTATTAATCAATTAATGGAGAA  148
      |||| |||||  ||||| ||||| ||||||||  ||||  |    |||||
seq2  CTTA-TTATT--AGTGA-GAGAGAAGAGCTAT--ATCATAT----GAGAA  127

seq1  TAGATGCCATGAGTTTGAAAGAGAGCAAGAAGGGGTGTGTGGGAGGGTTT  198
      |||||| |||||| |||||||||||| |||| |||||||| |||||||||
seq2  TAGATG-CATGAG-TTGAAAGAGAGC-AGAA-GGGTGTGT-GGAGGGTTT  172

seq1  GGAGGGAAGAAAGGGAAGGGAGAAAGATATGATGTAATATAGT-TATATT  247
       |||||||| ||||||| ||||||||||||||||||||||||| ||||| 
seq2  -GAGGGAAG-AAGGGAA-GGAGAAAGATATGATGTAATATAGTATATAT-  218

seq1  ATAATCTCAAAAAATAAAAGATAACATTACAAGCCTGACTTTCACCATAA  297
         ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ---ATCTC-AAAAATAAAAGATAACATTACAAGCCTGACTTTCACCATAA  264

seq1  TGGCTGGTGTATAAACCAACCCAATATTCATGACACTTGGCGGTAGGCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGTGTATAAACCAACCCAATATTCATGACACTTGGCGGTAGGCAG  314

seq1  GAGATGTCCCTCTCCTCCCACTAAAGAAAGCAATTTTGATCCGAGACACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTCCCTCTCCTCCCACTAAAGAAAGCAATTTTGATCCGAGACACC  364

seq1  TGCGAACATGTTGTGCTACAGGGCAGAGGGGAATTGAGAAGCATGGCTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAACATGTTGTGCTACAGGGCAGAGGGGAATTGAGAAGCATGGCTAA  414

seq1  CATAGCAGTTGTCAGCCTTAAAGGTGGTAGATGACCCTGGAGTGCTGAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAGTTGTCAGCCTTAAAGGTGGTAGATGACCCTGGAGTGCTGAGA  464

seq1  CAGGCTTAGGACCATCACAGTGTAACATAATTCAAACCTACAAGGAATAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTAGGACCATCACAGTGTAACATAATTCAAACCTACAAGGAATAG  514

seq1  AATGGAAGGTTTGATCTAGATAAGGATTGTGGTATTGAGCCCCTCTGTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGGTTTGATCTAGATAAGGATTGTGGTATTGAGCCCCTCTGTAT  564

seq1  TGGAACAGATCTGCTTAGTAGGGCTTCTCATGCAGACCTTAGACGGGCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAGATCTGCTTAGTAGGGCTTCTCATGCAGACCTTAGACGGGCAC  614

seq1  AGGGGAGAAGCTAACTGGCAAGGAACATCCAGCACTCATGAAAACCTCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAAGCTAACTGGCAAGGAACATCCAGCACTCATGAAAACCTCAA  664

seq1  CTTGATTCCTAGTAAGGAAAAACAGTTCTTAGACCCCTTAAGGTCTTGAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTCCTAGTAAGGAAAAACAGTTCTTAGACCCCTTAAGGTCTTGAG  714

seq1  CAACAAGGGAAGGAGCCTGGAATCAAAGACTGTCCAGAGAGCAAATGGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGGAAGGAGCCTGGAATCAAAGACTGTCCAGAGAGCAAATGGGG  764

seq1  CATGCCACAACACTGCAGCCCCTCACAGCTACTTCTCGATGGGAAAAGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACAACACTGCAGCCCCTCACAGCTACTTCTCGATGGGAAAAGGC  814

seq1  AGGGTTGTTCTCTGAAAGCTGAAACGAGCCCAAGATCTATCCCTTCGCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGTTCTCTGAAAGCTGAAACGAGCCCAAGATCTATCCCTTCGCTT  864

seq1  CGTTCCTCATGCACTCATGTGTGCAGTATCGTATCTTGCTATTTTTCGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCTCATGCACTCATGTGTGCAGTATCGTATCTTGCTATTTTTCGAA  914

seq1  ATATGTGGAAAGAAGCCAAAGAATATTAAAGAGAATTCTGCAGAGAGGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGGAAAGAAGCCAAAGAATATTAAAGAGAATTCTGCAGAGAGGAA  964

seq1  ATGCAAAAGACTTTTACCCTTGGGGGGAAAAAATCCCTTGTGTGATGCAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAAGACTTTTACCCTTGGGGGGAAAAAATCCCTTGTGTGATGCAA  1014

seq1  CCTTCCAAGATGACTCCATATTTCCTACATACATTTCTTGATGTATAGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAAGATGACTCCATATTTCCTACATACATTTCTTGATGTATAGCA  1064

seq1  CCTGAGTGTTGTCCTAGAGAATTC  1121
      ||||||||||||||||||||||||
seq2  CCTGAGTGTTGTCCTAGAGAATTC  1088