BAC Information

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BAC

Clone NameB6Ng01-144E20
Chromosome3 (Build37)
Map Location 65,830,677 - 65,831,788
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1
Downstream geneLOC625048, Veph1, Tpi-rs2, Ptx3, LOC625115, Shox2, Rsrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144E20.bB6Ng01-144E20.g
ACCDH942015DH942016
length1,0871,211
definitionDH942015|Mus musculus domesticus DNA, BAC clone: B6Ng01-144E20, 5' end.DH942016|Mus musculus domesticus DNA, BAC clone: B6Ng01-144E20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttcttgctgagaacctgatcgacactactatatttaaaatac
tatgttcatctcctctttatccctttaaatattttcccgtagtatatgtg
tgaaatttaataacttttataattttgtgtcatccctcttctttcacaag
gagtatgaaaataccctgactgttttaattttaatttttacttttgtatc
ctgagtccttgcttataggaaaagtgttcttacatgtcaaggaacagcag
aaaataagttgaagagtatttaggcatggttctggggcctggggagatgg
cttagagggtaggggaatcccagtgctgtggaagcagagacaggaggact
gtcaaggcatgtttgtcaacaacctagctccaggttaaacaaaagatcct
gtcttgaggaataaggaaaatgatggagcaggacacctggggtcctcctc
aagcctcacttacacacacgttcttgcacatacacatgcacacacacaca
cacacacacacacacatacacacactgcctatgtagatatagtatttgag
tagtaaaaggaaaggctggtgagatggctcatcaggaaaaggcacttgct
gccaagtgttatggtgttaaaaacaagaccatgatgttgcaatgttgcaa
gtcaaaatttgatttttatggacaggccagacttacattctccccttaca
atggcaggaaatgaagcggctccaacagtagcacctgagctataacaagg
aagtgtagaaggcaacctcataacatctggagatcccactgagacctgag
gacccacctggggtaggaacggatggaggatgaccactgagagtgttcct
cacttagcctcagcccttcctccttcctaaggtccttggactccactgaa
taacaagataaaagtgcctgtgggtcttgtctgtgagtcttgtctgtctt
gtccatgtcatctgcaccaacagcagggttctagaatgtagcatgctccc
tctagttggtcatcatagagaaatccctccaggctcctcagatcactgga
gtctaatgtatattttttggtttggttggtggttgtg
gaattcaaggcccatacctaaacatgataaaaagaaatctacagcaaacc
agtagccaacatcaaagtaaacggtgagaagctggaagcaatcccactaa
aatcagggactagacaaggctgatcactttctccctaactcttcaacata
gtacttgaagtcctagccagaggaattcgacaacaaaaggagatcaaggg
gatacaaattggaaaagatgaagtcaaaatatcactttttgcagatgata
tgatagtatatataagtgaccctaaaaattccaccagagaactcctaaac
ctgataaacagcttcagtgaagtaggtggatataaaagtaactcaaacaa
gtcaaaggcctttctctacacaaagaatatacaggctgagaaagaaatta
gggaaacaacatccttgtcaatagtcacaaataatataagatatcttggc
gtgactctaactaaggaagtgaaagatctatatgataagaacttcaattc
tctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccat
gctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaa
gcaatctacagattcaatgcaatccccatcaaaattccaactcaattctt
caacaaattagaaagtgcaatctgcaaattcatctggaattaaataaaaa
aaaaacctaggatagcaaaaactcttctcaaggataaaagaacctctggt
gaaatcaccatgcctgacctaaagctgtactacagagcaattgtgataaa
aaaaaaaactgcatggtactggtatagtgacagacaagtagaccaatgga
atagaattgaagacccagaaatgaacccacacacctatggtcacttgatc
ttcaacaagagagctaaaactatccagtgaagaaagacagcattttcaac
aaatgatgctggcacaactggtggttatcgtgtagagatgcgaatgatcc
atactaatctcctgtactagtcaatctagtggatcaggacttccaatgaa
acagacctgaactatagaggaaaagtagggaagcctcgagattggcacga
agaaacttctgaatagaacgcatgccttgtgctgtaagaatccgatacat
gaacctatgaacgcaagctctgcagggcgaggaccctcgatgagagcata
ggtgccacccg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65830677_65831788
seq2: B6Ng01-144E20.b_47_1133

seq1  GAATTCATTTCTTGCTGAGAACCTGATCGACACTACTATATTTAAAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTTGCTGAGAACCTGATCGACACTACTATATTTAAAATAC  50

seq1  TATGTTCATCTCCTCTTTATCCCTTTAAATATTTTCCCGTAGTATATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCATCTCCTCTTTATCCCTTTAAATATTTTCCCGTAGTATATGTG  100

seq1  TGAAATTTAATAACTTTTATAATTTTGTGTCATCCCTCTTCTTTCACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTAATAACTTTTATAATTTTGTGTCATCCCTCTTCTTTCACAAG  150

seq1  GAGTATGAAAATACCCTGACTGTTTTAATTTTAATTTTTACTTTTGTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGAAAATACCCTGACTGTTTTAATTTTAATTTTTACTTTTGTATC  200

seq1  CTGAGTCCTTGCTTATAGGAAAAGTGTTCTTACATGTCAAGGAACAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCCTTGCTTATAGGAAAAGTGTTCTTACATGTCAAGGAACAGCAG  250

seq1  AAAATAAGTTGAAGAGTATTTAGGCATGGTTCTGGGGCCTGGGGAGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTTGAAGAGTATTTAGGCATGGTTCTGGGGCCTGGGGAGATGG  300

seq1  CTTAGAGGGTAGGGGAATCCCAGTGCTGTGGAAGCAGAGACAGGAGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGGGTAGGGGAATCCCAGTGCTGTGGAAGCAGAGACAGGAGGACT  350

seq1  GTCAAGGCATGTTTGTCAACAACCTAGCTCCAGGTTAAACAAAAGATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGCATGTTTGTCAACAACCTAGCTCCAGGTTAAACAAAAGATCCT  400

seq1  GTCTTGAGGAATAAGGAAAATGATGGAGCAGGACACCTGGGGTCCTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAGGAATAAGGAAAATGATGGAGCAGGACACCTGGGGTCCTCCTC  450

seq1  AAGCCTCACTTACACACACGTTCTTGCACATACACATGCACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCACTTACACACACGTTCTTGCACATACACATGCACACACACACA  500

seq1  CACACACACACACACATACACACACTGCCTATGTAGATATAGTATTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACATACACACACTGCCTATGTAGATATAGTATTTGAG  550

seq1  TAGTAAAAGGAAAGGCTGGTGAGATGGCTCATCAGGAAAAGGCACTTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAAGGAAAGGCTGGTGAGATGGCTCATCAGGAAAAGGCACTTGCT  600

seq1  GCCAAGTGTTATGGTGTTAAAAACAAGACCATGATGTTGCAATGTTGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTGTTATGGTGTTAAAAACAAGACCATGATGTTGCAATGTTGCAA  650

seq1  GTCAAAATTTGATTTTTATGGACAGGCCAGACTTACATTCTCCCCTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAATTTGATTTTTATGGACAGGCCAGACTTACATTCTCCCCTTACA  700

seq1  ATGGCAGGAAATGAAGCGGCTCCAACAGTAGCACCTGAGCTATAACAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGGAAATGAAGCGGCTCCAACAGTAGCACCTGAGCTATAACAAGG  750

seq1  AAGTGTAGAAGGCAACCTCATAACATCTGGAGATCCCACTGAGACCTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGAAGGCAACCTCATAACATCTGGAGATCCCACTGAGACCTGAG  800

seq1  GACCCACCTGGGGTAGGAACGGATGGAGGATGACCACTGAGAGTGTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACCTGGGGTAGGAACGGATGGAGGATGACCACTGAGAGTGTTCCT  850

seq1  CACTTAGCCTCAGCCCTTCCTCCTTCCTAAGGTCCTTGGACTCCACTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGCCTCAGCCCTTCCTCCTTCCTAAGGTCCTTGGACTCCACTGAA  900

seq1  TTACAAGATAAAAGTGCCTGTGGGTCTTGTCTGTGAGTCTTGTCTGTCTT  950
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGATAAAAGTGCCTGTGGGTCTTGTCTGTGAGTCTTGTCTGTCTT  950

seq1  GTCCATGTCATCTGCACCAACAGCAGGGTTCTAGAATGTAGCATGCTCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGTCATCTGCACCAACAGCAGGGTTCTAGAATGTAGCATGCTCCC  1000

seq1  TCTAGTTGGTCATCATAGAGACATCCCTCCAAGACTCTCAGATCACT-GA  1049
      ||||||||||||||||||||| ||||||||| |   ||||||||||| ||
seq2  TCTAGTTGGTCATCATAGAGAAATCCCTCCAGGCTCCTCAGATCACTGGA  1050

seq1  GTCTAATGTTTATATTTATTTGGTTTTGTTGTTGTTGTTGTTTTGGTGGT  1099
      ||||||||  ||||||| |||||||| ||                     
seq2  GTCTAATG--TATATTT-TTTGGTTTGGT---------------------  1076

seq1  GGTGGTGGTTGTG  1112
        |||||||||||
seq2  --TGGTGGTTGTG  1087