BAC Information

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BAC

Clone NameB6Ng01-144G14
Chromosome3 (Build37)6 (Build37)
Map Location 41,059,230 - 41,059,73736,647,806 - 36,648,934
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144G14.bB6Ng01-144G14.g
ACCDH942095DH942096
length9751,108
definitionDH942095|Mus musculus domesticus DNA, BAC clone: B6Ng01-144G14, 5' end.DH942096|Mus musculus domesticus DNA, BAC clone: B6Ng01-144G14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,230 - 41,059,737)(36,647,806 - 36,648,934)
sequence
gaattctttgtttagctctgtgcccaaattttaatggggttatttgattt
tctggagtccaccttcttgacttctttatatatattggatattagtcccc
tatctgatttagaattggtaaagacctttcccaatctgttggtggccttt
ttgtcttattgacggtgtcttttgccttgcagaagctttgcaatttcatg
aggtcccatttgtcatttctcgatcttatagcacaagccattgctgttct
attcaggaatttttcccctttgcccatatcttcgagacttttccccactt
tctcctctataggtttcactgtctctggttttatgtgcagttccttgatc
cacttagatttgaccttagtacaaggagataggaatgggtcgattcgcat
tcttctatatgataaccgccagttgtgccagcaccatttgttgaaaatgc
tgtcttttttccactggatgattttagctcccttgtcaaagatcaagtga
ccataggtctatgggttcatttctgggtctttaattctattgattggtct
ccttgtctgtcgttgtaccagtaccatgcagtttttatcacaactgatct
gtagtacagatttaggtcaggcatggtgattccaccagaggttcttttat
ccttgagaagagtttttgctgtcctaggttttttgttattccagatgaat
ctgccgaatgccctttctaattcgttgaagaactgagttggaattttgat
ggggattgcattaaatctgtagattgcttttggcaagatagccattttta
ctatattgatcctgccaatccatgagtatgggagatctttccatcttctg
agatcttctttaatttctttcttcagagacttgaagttcttatcatacag
atctttcacttttcttagttagagtcacgccaaggtattttatgtttttg
tgactattgtgacagtgttgttccc
gaattcagtgtgtgttgatatttcaaagtcaacacccaggaacttcaatt
acctttataaccataaggtttgagggatggccaaatagactagaatgcca
gagaatttaggagatggtaatggagcccttagataggttatccttgctag
gtacaaaaactgaactatagacaaggcagccagtaactatgacactaaat
atttataactaggaaaggcagaaacagaagagcctggtgtttgttcccta
aaatagttataattcactgctcaggttttaattctgcgctatatttttgt
atttataattaaattactgaaaacgggttgaggtcactaaaaggaagtct
ttatcacaagatggcaatgaaatatgacactggttcctatagcccttccc
caagtgatctctggacatttcatggttatttttcatagagaaagggaagc
atataatgtttggagaaaatacctaaccaaatgtctgtctgatcattaag
acctggagatctaaaccactgtacggtcatctgtttaagtggagggctac
aggcacatgtaagaaatgtgccctagataacattcaggtcacagatggcc
aactccatctgcagaccctgtcatccccaaatagtctcagttccagaatg
ttaacttggaatgggtatgcttagtaatttgattatctgccaggctgggc
tgttggtggaaagtaaaaggaacctctgaagctgatgctccagtgaaatt
tacatatttaattaaagagagaaacactccttggagttgacttgatgatg
gagatcatcaacaccactgtaaagctaaagaagattgcaagaggatccag
atgaagaagctgtgccagtcctagcaccattaatgtagggctaatgatgc
ctatggtatactgacagctattgacttggccaatgtatttttttattcat
aagaaaaataccctacagttatgtctatgggttatttttgtatttagctc
atagtcacattacatattatatatcatatatgtacaatatataccatata
cccacccatattatcatatactatattacatctacacatttattcattct
tatataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059230_41059737
seq2: B6Ng01-144G14.b_48_554 (reverse)

seq1  ACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAA  50
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  ACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAATCATCCAGTGGAA  50

seq1  AAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCAT  100
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  AAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGTTATCAT  100

seq1  GTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAA  150
       ||||||||||||||| || ||| ||||||||||||||||||||||||||
seq2  ATAGAAGAATGCGAATCGACCCATTCCTATCTCCTTGTACTAAGGTCAAA  150

seq1  TCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTAT  200
      |||||||||||||||||||  |||||||||||||||||| |||||| |||
seq2  TCTAAGTGGATCAAGGAACTGCACATAAAACCAGAGACAGTGAAACCTAT  200

seq1  AGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAAT  250
      ||||||||||||||||||||| || |||||||||| || |||||||||||
seq2  AGAGGAGAAAGTGGGGAAAAGTCTCGAAGATATGGGCAAAGGGGAAAAAT  250

seq1  TCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAA  300
      ||||| ||||||||||||||||||||||| |||||| |||||  ||||||
seq2  TCCTGAATAGAACAGCAATGGCTTGTGCTATAAGATCGAGAAATGACAAA  300

seq1  TGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAA  350
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGGACCTCATGAAATTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAA  350

seq1  TAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTA  399
      ||||||||||||| |||||||||||||||||||| |||||||| || |||
seq2  TAAGACAAAAAGGCCACCAACAGATTGGGAAAGG-TCTTTACCAATTCTA  399

seq1  AATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTG  449
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  AATCAGATAGGGGACTAATATCCAATATATATAAAGAAGTCAAGAAGGTG  449

seq1  GATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAA  499
      || |||||||||||||||||||||||| |||| | |||| ||||||||||
seq2  GACTCCAGAAAATCAAATAACCCCATT-AAAATTTGGGCACAGAGCTAAA  498

seq1  CAAAGAATT  508
      |||||||||
seq2  CAAAGAATT  507

seq1: chr6_36647806_36648934
seq2: B6Ng01-144G14.g_67_1174 (reverse)

seq1  ATTATATATAATGTATATTGTATATAAATGTGTAGTATTGGTATATATAT  50
      ||||||||      | | ||   |||||||||||| ||  |||   ||||
seq2  ATTATATA------AGAATG--AATAAATGTGTAG-AT--GTA---ATAT  36

seq1  AGTATATGATTATATATGTGTGTGTATATGTGTATATATGTGTACATATA  100
      ||||||||||   ||||| ||| ||||||| |||||||| ||||||||||
seq2  AGTATATGAT--AATATGGGTGGGTATATG-GTATATAT-TGTACATATA  82

seq1  TGATATAT-ATATGTAATGTGACTAATGAGCTAAAATACAAAAATAACCC  149
      |||||||| ||||||||||||||| ||||||| |||||||||||||||||
seq2  TGATATATAATATGTAATGTGACT-ATGAGCT-AAATACAAAAATAACCC  130

seq1  ATAGACATAAACTGTAGGGTATTTTTCTTATTGAATAAAAAAATACATTG  199
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  ATAGACAT-AACTGTAGGGTATTTTTCTTA-TGAATAAAAAAATACATTG  178

seq1  GCCAAGTCAATAGCTGTCAGTATACCATAGGCATCATTAGCCCTACATTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTCAATAGCTGTCAGTATACCATAGGCATCATTAGCCCTACATTA  228

seq1  ATGGTGCTAGGACTGGCACAGCTTCTTCATCTGGATCCTCTTGCAATCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCTAGGACTGGCACAGCTTCTTCATCTGGATCCTCTTGCAATCTT  278

seq1  CTTTAGCTTTACAGTGGTGTTGATGATCTCCATCATCAAGTCAACTCCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTTTACAGTGGTGTTGATGATCTCCATCATCAAGTCAACTCCAA  328

seq1  GGAGTGTTTCTCTCTTTAATTAAATATGTAAATTTCACTGGAGCATCAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTTTCTCTCTTTAATTAAATATGTAAATTTCACTGGAGCATCAGC  378

seq1  TTCAGAGGTTCCTTTTACTTTCCACCAACAGCCCAGCCTGGCAGATAATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGTTCCTTTTACTTTCCACCAACAGCCCAGCCTGGCAGATAATC  428

seq1  AAATTACTAAGCATACCCATTCCAAGTTAACATTCTGGAACTGAGACTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTAAGCATACCCATTCCAAGTTAACATTCTGGAACTGAGACTAT  478

seq1  TTGGGGATGACAGGGTCTGCAGATGGAGTTGGCCATCTGTGACCTGAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGATGACAGGGTCTGCAGATGGAGTTGGCCATCTGTGACCTGAATG  528

seq1  TTATCTAGGGCACATTTCTTACATGTGCCTGTAGCCCTCCACTTAAACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTAGGGCACATTTCTTACATGTGCCTGTAGCCCTCCACTTAAACAG  578

seq1  ATGACCGTACAGTGGTTTAGATCTCCAGGTCTTAATGATCAGACAGACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCGTACAGTGGTTTAGATCTCCAGGTCTTAATGATCAGACAGACAT  628

seq1  TTGGTTAGGTATTTTCTCCAAACATTATATGCTTCCCTTTCTCTATGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAGGTATTTTCTCCAAACATTATATGCTTCCCTTTCTCTATGAAA  678

seq1  AATAACCATGAAATGTCCAGAGATCACTTGGGGAAGGGCTATAGGAACCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCATGAAATGTCCAGAGATCACTTGGGGAAGGGCTATAGGAACCA  728

seq1  GTGTCATATTTCATTGCCATCTTGTGATAAAGACTTCCTTTTAGTGACCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATATTTCATTGCCATCTTGTGATAAAGACTTCCTTTTAGTGACCT  778

seq1  CAACCCGTTTTCAGTAATTTAATTATAAATACAAAAATATAGCGCAGAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCGTTTTCAGTAATTTAATTATAAATACAAAAATATAGCGCAGAAT  828

seq1  TAAAACCTGAGCAGTGAATTATAACTATTTTAGGGAACAAACACCAGGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTGAGCAGTGAATTATAACTATTTTAGGGAACAAACACCAGGCT  878

seq1  CTTCTGTTTCTGCCTTTCCTAGTTATAAATATTTAGTGTCATAGTTACTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTTCTGCCTTTCCTAGTTATAAATATTTAGTGTCATAGTTACTG  928

seq1  GCTGCCTTGTCTATAGTTCAGTTTTTGTACCTAGCAAGGATAACCTATCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTGTCTATAGTTCAGTTTTTGTACCTAGCAAGGATAACCTATCT  978

seq1  AAGGGCTCCATTACCATCTCCTAAATTCTCTGGCATTCTAGTCTATTTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTCCATTACCATCTCCTAAATTCTCTGGCATTCTAGTCTATTTGG  1028

seq1  CCATCCCTCAAACCTTATGGTTATAAAGGTAATTGAAGTTCCTGGGTGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCTCAAACCTTATGGTTATAAAGGTAATTGAAGTTCCTGGGTGTT  1078

seq1  GACTTTGAAATATCAACACACACTGAATTC  1129
      ||||||||||||||||||||||||||||||
seq2  GACTTTGAAATATCAACACACACTGAATTC  1108