BAC Information

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BAC

Clone NameB6Ng01-144K19
Chromosome3 (Build37)
Map Location 87,884,282 - 87,885,373
singlet/doubletsinglet
Overlap genenone
Upstream geneKirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24
Downstream geneIqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144K19.bB6Ng01-144K19.g
ACCDH942289DH942290
length1,077171
definitionDH942289|Mus musculus domesticus DNA, BAC clone: B6Ng01-144K19, 5' end.DH942290|Mus musculus domesticus DNA, BAC clone: B6Ng01-144K19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ggttcaattccccgcatccatataatagcttacaactgtcccaactacag
cctcagggggtccgacatcctcacacaaacatacatgcaggcaaaacacc
aatgcacataaaataaaagtaactaaataagtcattttaaaaaaaaagag
agatggctcagcagttaagagcactgactgctcttctgagccaccaacca
catggtggctcacaaccatccataatgagatctgatgccctcttctggtg
tgtctgaaggcagctacaatgtacttacatataataaataaataaataaa
taaataaatctttaaaagaaaaaaaaaaaaaacttctcctggagtggcac
attcttttaatactaggggaggcagaggcaggaagatctctgtgagtttg
aggccaactctggtccacagagcaagtttcaggacagtcagggctacaca
gagaaacagggtcttgaaaaacaaacaacaaacaaaagacttcctacaca
actaacaaagtcaatgtgaagattatttatagagataatattccttctat
acagaaatatttcaaatgacacaatatgaggaataaatatgacaacactt
tatacacatatatgaaattgctccttttctccattttgtatactccaggg
tcccctgtccagggaatggccccacccacaattaaaaagggtctacctaa
tcaattaacatggccaagataatctctcacaggcaagctctttttttttc
ttttttcttttttgtaatagtgaaggactggctatagatcctctttgagt
gtctggtagaattcgtctgtgaatccatctggccttggattctttattta
gctcctcttgtctctctaacttctggagccattctttctgatcctttaat
acaggcatcttatagattccccctgtagggctgctttccatgtgtgccag
aggtgtcctggtttagtacaggagattgattgattgattgatttctcata
actccagtgatgagtgttaaatctccatgagttgcatatgactaagaatt
ttgtgtcaattcagttattgcatgtgt
tcttcatccaatccaggaagacctggctttgtgcctggagcatccctcat
gcgactgcatggtgggggtggggtgggggtccattttaaacgcgcttgac
tgggaagaaccttggataccgcaactggatttgtttgcagttcttcctct
tttgcgaaggaggcacaatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_87884282_87885373
seq2: B6Ng01-144K19.b_55_1131 (reverse)

seq1  ACACAATGCAATAAAACTTGAAATTGACACCAAAAATTTCTAGTCAATAT  50
      |||| |||||||  ||||   |||||||||  ||||||  ||||| ||||
seq2  ACAC-ATGCAAT--AACT--GAATTGACAC--AAAATTCTTAGTC-ATAT  42

seq1  GCAAACTCATGGAGATTTAACAACTCATCACTGGAGTTAATGAAGAAATC  100
      || |||||||||||||||||| |||||||||||||||| ||| |||||||
seq2  GC-AACTCATGGAGATTTAAC-ACTCATCACTGGAGTT-ATG-AGAAATC  88

seq1  AATCAATCAATCAATCTCCCTGTAACTAAACCAAGGACACCTCTGGCACA  150
      ||||||||||||||||| ||||| |||||||| |||||||||||||||||
seq2  AATCAATCAATCAATCT-CCTGT-ACTAAACC-AGGACACCTCTGGCACA  135

seq1  CATGGAAAGCAGCCCTACAGGGGGAATCTATAAGATGCCTGTATTAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAAGCAGCCCTACAGGGGGAATCTATAAGATGCCTGTATTAAAGG  185

seq1  ATCAGAAAGAATGGCTCCAGAAGTTAGAGAGACAAGAGGAGCTAAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAGAATGGCTCCAGAAGTTAGAGAGACAAGAGGAGCTAAATAAA  235

seq1  GAATCCAAGGCCAGATGGATTCACAGACGAATTCTACCAGACACTCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAAGGCCAGATGGATTCACAGACGAATTCTACCAGACACTCAAAG  285

seq1  AGGATCTATAGCCAGTCCTTCACTATTACAAAAAAGAAAAAAGAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTATAGCCAGTCCTTCACTATTACAAAAAAGAAAAAAGAAAAAAA  335

seq1  AAGAGCTTGCCTGTGAGAGATTATCTTGGCCATGTTAATTGATTAGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTTGCCTGTGAGAGATTATCTTGGCCATGTTAATTGATTAGGTAG  385

seq1  ACCCTTTTTAATTGTGGGTGGGGCCATTCCCTGGACAGGGGACCCTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTTTAATTGTGGGTGGGGCCATTCCCTGGACAGGGGACCCTGGAG  435

seq1  TATACAAAATGGAGAAAAGGAGCAATTTCATATATGTGTATAAAGTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAAATGGAGAAAAGGAGCAATTTCATATATGTGTATAAAGTGTTG  485

seq1  TCATATTTATTCCTCATATTGTGTCATTTGAAATATTTCTGTATAGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTATTCCTCATATTGTGTCATTTGAAATATTTCTGTATAGAAGG  535

seq1  AATATTATCTCTATAAATAATCTTCACATTGACTTTGTTAGTTGTGTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATCTCTATAAATAATCTTCACATTGACTTTGTTAGTTGTGTAGG  585

seq1  AAGTCTTTTGTTTGTTGTTTGTTTTTCAAGACCCTGTTTCTCTGTGTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTTTGTTTGTTGTTTGTTTTTCAAGACCCTGTTTCTCTGTGTAGC  635

seq1  CCTGACTGTCCTGAAACTTGCTCTGTGGACCAGAGTTGGCCTCAAACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTGTCCTGAAACTTGCTCTGTGGACCAGAGTTGGCCTCAAACTCA  685

seq1  CAGAGATCTTCCTGCCTCTGCCTCCCCTAGTATTAAAAGAATGTGCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATCTTCCTGCCTCTGCCTCCCCTAGTATTAAAAGAATGTGCCACT  735

seq1  CCAGGAGAAGTTTTTTTTTTTTTTCTTTTAAAGATTTATTTATTTATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAAGTTTTTTTTTTTTTTCTTTTAAAGATTTATTTATTTATTTA  785

seq1  TTTATTTATTATATGTAAGTACATTGTAGCTGCCTTCAGACACACCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTATATGTAAGTACATTGTAGCTGCCTTCAGACACACCAGAA  835

seq1  GAGGGCATCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCATCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTGGT  885

seq1  GGCTCAGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCTTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCTTTTT  935

seq1  TTTTAAAATGACTTATTTAGTTACTTTTATTTTATGTGCATTGGTGTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATGACTTATTTAGTTACTTTTATTTTATGTGCATTGGTGTTTT  985

seq1  GCCTGCATGTATGTTTGTGTGAGGATGTCGGACCCCCTGAGGCTGTAGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCATGTATGTTTGTGTGAGGATGTCGGACCCCCTGAGGCTGTAGTT  1035

seq1  GGGACAGTTGTAAGCTATTATATGGATGCGGGGAATTGAACC  1092
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGTTGTAAGCTATTATATGGATGCGGGGAATTGAACC  1077