BAC Information

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BAC

Clone NameB6Ng01-144L18
Chromosome3 (Build37)
Map Location 25,997,361 - 26,137,318
singlet/doubletdoublet
Overlap geneNlgn1
Upstream geneLOC100039592, LOC621017
Downstream geneLOC229152, Spata16, LOC665258, Ect2, Aadacl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144L18.bB6Ng01-144L18.g
ACCDH942333DH942334
length1,1191,111
definitionDH942333|Mus musculus domesticus DNA, BAC clone: B6Ng01-144L18, 5' end.DH942334|Mus musculus domesticus DNA, BAC clone: B6Ng01-144L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,136,169 - 26,137,318)(25,997,361 - 25,998,290)
sequence
gaattcttgcataaaatcatatagttttgaactcttttatttagaatatt
ttctattaattctaatttaaagcacctattttaaagggtcctttgcttga
atgtgtctttaccggggatggtgttttctgtcttggcacccgtactgtcg
tatggtgtattggtctcttattctccattctgtgcagttggcaccttagt
gatgacatgtgtttcttcctgatacaccttatttgtaaatacactacata
ttcccaaatgattgagttcttagtaattttattgatatactttttaaaag
atatacttttttctcccgattaactttttatatatgcttctattttcaat
aatttttgctcttacttttgtgatttattattattttttcatacttgtga
ttcaaccctttccattccattttcttacggtagacacttagattcgaggg
ctttggctttattaactttttgttccttgtcaattttataagtgaatgta
atgaatttgatcatttcaccccaaccccctctctcattcccctctcttct
actgagacctttcttgccaacaagctccatgcccaccctacttctacatt
tcttgtgtttgcatgaaacctatatatgcttaattatggttgctgtatag
attgggggttatttattgaatcttgagaaactattaattggccacaccaa
tgaagagaacgatactttttctctcatgatcattaatatcacgtagtccc
tcatgatctcttcttgatcagataaagggaaactgtgatgagctccaact
tgtgtatcattataaaacattatagatatttgagtctatttagatccatt
ttccatctttatcaatacttaacttcaaccataataaacatctctgtgtt
atatctgcatatgctacaaccttccaatacaattatgtattctgtttaaa
tcatttgcattttagagagcacatgtataacatgcctttcatttagtcac
cttacacattttagtcacccattagttccatcaatgttttcaatttttta
tttggtgaatcactatagttgaaactttaattagttttaaagtaaactgt
aattagctatgatattgtt
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
aacctaggatagcaaaaactcttctcaaggataaaagaacctctggtgga
atcaccatgcctgatctaaagctttactgcagagcaattgtggtaaaaac
tgcatggtactggtatagagacagacaagtagaccaatggaatagaattg
aagacccagaaatgaacccacacacctatggtcacttgatcttcgacaag
ggagctaaaaccatccagtggaacaaaatggattaattaattaattaact
ataagttcactatatatgatgtcttggaatccttttcttggttgttgatg
tagaaagattatctttctaagtagcttatctttgcacttacattagacag
ctttgcctttgttccccctctccagcgcgtcatgtaagtacccaggaaat
acactttcttctagagatagcaggtttgctttgattaaaattagaaaata
atttataactcttggctattgtggtcttcacatgtttcaagtgactgaat
ttagtatgcaaagtttaaagtttcctttgaatgtcaaaagttatttcatt
ttgatgttattttcattaaaatgctatgtcccatactgactgaatgagca
attgaggttcttccagtgttcagcccaaccaaatctccttttctaagcca
ttaaaagcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_26136169_26137318
seq2: B6Ng01-144L18.b_45_1163 (reverse)

seq1  AACAATATCATTAGCTAATCTACAGTTTTACTTTTTAAAAAACTAAATAA  50
      |||||||||| |||||||| ||||| ||||||||    |||||| ||| |
seq2  AACAATATCA-TAGCTAAT-TACAG-TTTACTTT----AAAACT-AATTA  42

seq1  AAGTTTTTCAAACTATAGTGATTTTCACCAAATAAAAATATGAAAACCAA  100
      ||||||    |||||||||||  |||||||||||||||  |||||||  |
seq2  AAGTTT---CAACTATAGTGA--TTCACCAAATAAAAAATTGAAAAC--A  85

seq1  TTGATTGGAACTAAAATTGGGTTGGAACTAAAAATGTGT-AGGTGACTTA  149
      |||| |||||||||   |||||    ||| ||||||||| ||||||| ||
seq2  TTGA-TGGAACTAA---TGGGT---GACT-AAAATGTGTAAGGTGAC-TA  126

seq1  AATGAAAGGCATTGTTTATACATTGTGGCTTCTCTAAAATGCAAATGATT  199
      ||||||||||||   ||||||| ||||   ||||||||||||||||||||
seq2  AATGAAAGGCAT--GTTATACA-TGTG--CTCTCTAAAATGCAAATGATT  171

seq1  TAAACAGAAATACATAATTGTATTGGAAGGTTTGTAGCATATGCAGATAT  249
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  TAAACAG-AATACATAATTGTATTGGAAGG-TTGTAGCATATGCAGATAT  219

seq1  AACACAGAGATGTTTATTATGGTTGAAGTTAAGTATTGATAAAGATGGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAGATGTTTATTATGGTTGAAGTTAAGTATTGATAAAGATGGAA  269

seq1  AATGGATCTAAATAGACTCAAATATCTATAATGTTTTTATAATGATACAC  349
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATGGATCTAAATAGACTCAAATATCTATAATG-TTTTATAATGATACAC  318

seq1  AAGTTGGAGCTCATCACAGTTTCCCTTTATCTGATCAAGAAGAGATCATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGAGCTCATCACAGTTTCCCTTTATCTGATCAAGAAGAGATCATG  368

seq1  AGGGACTACGTGATATTAATGATCATGAGAGAAAAAGTATCGTTCTCTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTACGTGATATTAATGATCATGAGAGAAAAAGTATCGTTCTCTTC  418

seq1  ATTGGTGTGGCCAATTAATAGTTTCTCAAGATTCAATAAATAACCCCCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGTGGCCAATTAATAGTTTCTCAAGATTCAATAAATAACCCCCAA  468

seq1  TCTATACAGCAACCATAATTAAGCATATATAGGTTTCATGCAAACACAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACAGCAACCATAATTAAGCATATATAGGTTTCATGCAAACACAAG  518

seq1  AAATGTAGAAGTAGGGTGGGCATGGAGCTTGTTGGCAAGAAAGGTCTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGAAGTAGGGTGGGCATGGAGCTTGTTGGCAAGAAAGGTCTCAG  568

seq1  TAGAAGAGAGGGGAATGAGAGAGGGGGTTGGGGTGAAATGATCAAATTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGAGGGGAATGAGAGAGGGGGTTGGGGTGAAATGATCAAATTCA  618

seq1  TTACATTCACTTATAAAATTGACAAGGAACAAAAAGTTAATAAAGCCAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTCACTTATAAAATTGACAAGGAACAAAAAGTTAATAAAGCCAAA  668

seq1  GCCCTCGAATCTAAGTGTCTACCGTAAGAAAATGGAATGGAAAGGGTTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCGAATCTAAGTGTCTACCGTAAGAAAATGGAATGGAAAGGGTTGA  718

seq1  ATCACAAGTATGAAAAAATAATAATAAATCACAAAAGTAAGAGCAAAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGTATGAAAAAATAATAATAAATCACAAAAGTAAGAGCAAAAAT  768

seq1  TATTGAAAATAGAAGCATATATAAAAAGTTAATCGGGAGAAAAAAGTATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAAATAGAAGCATATATAAAAAGTTAATCGGGAGAAAAAAGTATA  818

seq1  TCTTTTAAAAAGTATATCAATAAAATTACTAAGAACTCAATCATTTGGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAAAAGTATATCAATAAAATTACTAAGAACTCAATCATTTGGGA  868

seq1  ATATGTAGTGTATTTACAAATAAGGTGTATCAGGAAGAAACACATGTCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAGTGTATTTACAAATAAGGTGTATCAGGAAGAAACACATGTCAT  918

seq1  CACTAAGGTGCCAACTGCACAGAATGGAGAATAAGAGACCAATACACCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGGTGCCAACTGCACAGAATGGAGAATAAGAGACCAATACACCAT  968

seq1  ACGACAGTACGGGTGCCAAGACAGAAAACACCATCCCCGGTAAAGACACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACAGTACGGGTGCCAAGACAGAAAACACCATCCCCGGTAAAGACACA  1018

seq1  TTCAAGCAAAGGACCCTTTAAAATAGGTGCTTTAAATTAGAATTAATAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCAAAGGACCCTTTAAAATAGGTGCTTTAAATTAGAATTAATAGA  1068

seq1  AAATATTCTAAATAAAAGAGTTCAAAACTATATGATTTTATGCAAGAATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCTAAATAAAAGAGTTCAAAACTATATGATTTTATGCAAGAATT  1118

seq1  C  1150
      |
seq2  C  1119

seq1: chr3_25997361_25998290
seq2: B6Ng01-144L18.g_248_1180

seq1  TTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCT  50

seq1  TACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCA  100

seq1  TATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCT  150

seq1  GGTTTTATGTGAAGTTCTTTGATCCATTTAGATTTGACCTTAGTACAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATGTGAAGTTCTTTGATCCATTTAGATTTGACCTTAGTACAAGG  200

seq1  AGATAAGTATGGATCGATTCGCATTCTTCTACATGATAACAACCAGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGTATGGATCGATTCGCATTCTTCTACATGATAACAACCAGTTGT  250

seq1  GCCAGCACCATTTGTTGAAAATAACCTAGGATAGCAAAAACTCTTCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCACCATTTGTTGAAAATAACCTAGGATAGCAAAAACTCTTCTCAA  300

seq1  GGATAAAAGAACCTCTGGTGGAATCACCATGCCTGATCTAAAGCTTTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAAGAACCTCTGGTGGAATCACCATGCCTGATCTAAAGCTTTACT  350

seq1  GCAGAGCAATTGTGGTAAAAACTGCATGGTACTGGTATAGAGACAGACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAATTGTGGTAAAAACTGCATGGTACTGGTATAGAGACAGACAA  400

seq1  GTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAATGGAATAGAATTGAAGACCCAGAAATGAACCCACACACCTA  450

seq1  TGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAACAAAA  500

seq1  TGGATTAATTAATTAATTAACTATAAGTTCACTATATATGATGTCTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAATTAATTAATTAACTATAAGTTCACTATATATGATGTCTTGGA  550

seq1  ATCCTTTTCTTGGTTGTTGATGTAGAAAGATTATCTTTCTAAGTAGCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTCTTGGTTGTTGATGTAGAAAGATTATCTTTCTAAGTAGCTTA  600

seq1  TCTTTGCACTTACATTAGACAGCTTTGCCTTTGTTCCCCCTCCCCAGCGC  650
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTTTGCACTTACATTAGACAGCTTTGCCTTTGTTCCCCCTCTCCAGCGC  650

seq1  GTCATGTAAGTACCCAGGAAATACACTTTCTTCTAGAGATAAGCAGGTTT  700
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCATGTAAGTACCCAGGAAATACACTTTCTTCTAGAGAT-AGCAGGTTT  699

seq1  GCTTTGATTATAAATTAGAAAATAATTTATAACTCTTGGCTATTGTGGTC  750
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGATTA-AAATTAGAAAATAATTTATAACTCTTGGCTATTGTGGTC  748

seq1  TTCACATGTTTCAAGTGACCTGAATTTTAGTATGCAAAGTTTAAAGTTTC  800
      |||||||||||||||||| ||||| |||||||||||||||||||||||||
seq2  TTCACATGTTTCAAGTGA-CTGAA-TTTAGTATGCAAAGTTTAAAGTTTC  796

seq1  CTATGAATGTTCAAAAAGTTATTTCATTTTGAATGTATTTTCATTAAAAT  850
      || |||||||   |||||||||||||||||||   |||||||||||||||
seq2  CTTTGAATGT--CAAAAGTTATTTCATTTTGATGTTATTTTCATTAAAAT  844

seq1  GCTATGTCCCATACTGACTGGAATGAGC-ATTGA-GTTCTT-CAGTGTTT  897
      ||||||||||||||||||| |||||||| ||||| |||||| ||||| ||
seq2  GCTATGTCCCATACTGACT-GAATGAGCAATTGAGGTTCTTCCAGTG-TT  892

seq1  CAGCACAACCAAATCTCCTTTTC--------TTAAAGCAAT  930
      |||| ||||||||||||||||||        | ||||||||
seq2  CAGCCCAACCAAATCTCCTTTTCTAAGCCATTAAAAGCAAT  933