BAC Information

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BAC

Clone NameB6Ng01-144M16
Chromosome3 (Build37)
Map Location 93,053,898 - 93,055,082
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574
Downstream geneEG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144M16.bB6Ng01-144M16.g
ACCDH942371DH942372
length1,156226
definitionDH942371|Mus musculus domesticus DNA, BAC clone: B6Ng01-144M16, 5' end.DH942372|Mus musculus domesticus DNA, BAC clone: B6Ng01-144M16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcttactatttcaaaactaaattaaaagcaatttttatttgcct
ggtatttgataaaaaagaatttatttcatgaagtaataatgatgtatgca
gtaattgatttgcatttgattaatacaagttaggaaaatttggtataaat
ttattcacagcaggaaactggttcattttgctaggaggtatatatgttta
tgtaacatgcctataataaaaatgaggaaacgtattaatattattttaaa
ggttgggattttatgttttctccttaaatctcagcttccactgcaccaac
ttttttcctctggttctatttccaaaagacctcatggaatgacaaagcac
tgggctatatagcaggtgcctttgaataaagtttacacttatgattatgt
aagattgagaaccacgctcctgaaactgaacatgtaaagccactcgattc
taggatcagctttgcagaaggccgatgggttctcctctgtgcgggcatcg
gtgagcattgtgctcacacaattctggaataacaaggcacctgtaaagag
acagtttagtcttcactttggattatcttagtgtcactttcagttgcgaa
gttatattaaaagcaattcttgatgggcagtgctggggggatgcagccct
ctccccctcatttatgccctctccaggttccccagaattaaactaaaata
aagcagagaactggcaaaaaaaattcactcaaaacacaatcgcctgctgt
gacgcagcatcttatcccatacttggtattaaaacaaaagcatattcata
gaacataactgggttttaaatgaaaccaaaattctcattacatttccccg
taagtacaaaaatggccttttctctaacattaataaactataaacaggaa
gataaattatgaaaactatcaagcaagattacacctacaatgtccagtcc
acatgtatcagaagctttgagaaactactcacatctatcccatcctagtg
agtccatgtttcatactaatattttctagcatactttcactgcactaaac
acattattagatctaaacatttccttagatctaaatcctaagctttatgt
ctttatcttcaatagaaactgtaacctgtactattctagccttcagcctg
gtgaga
agtttctctacagactagatctttctttcatgttcattcacctcatgttt
tttgcttctgttatacattgttgctacagtagtttttttctaattgaaga
taatgttatttgtatacaatatattctgtttgggggggggtgttgttttc
ctcactctgctcccttacctccataagttaaaaggaattatgtataatcc
actgtctttagaaatatatgatttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93053898_93055082
seq2: B6Ng01-144M16.b_47_1202 (reverse)

seq1  TCTCACCGGGCTGAAGGCTAG-ATAGTTACAGTGTTACAGTTTTCCTTAT  49
      ||||||| ||||||||||||| |||| ||||| ||||||||||    |||
seq2  TCTCACCAGGCTGAAGGCTAGAATAG-TACAG-GTTACAGTTT---CTAT  45

seq1  TGAAGATTAAAGACATAAAAGCTTAAGTATTTTAGGATCTAAGGAAATGT  99
      |||||| ||||||||| ||||||| || ||||   |||||||||||||||
seq2  TGAAGA-TAAAGACAT-AAAGCTT-AGGATTT--AGATCTAAGGAAATGT  90

seq1  TTTAAGATCTAAATAAATGTGTTTAGGTTGGCAAGTGAAAGTTATGCTAA  149
      ||  ||||||||   |||||||||||  ||   |||||||| |||||| |
seq2  TT--AGATCTAA--TAATGTGTTTAG--TG--CAGTGAAAG-TATGCT-A  130

seq1  GAAAATAATTTAGGTATGAAACATTGGACTCACTAGGATGGGATAGATGG  199
      |||||||  ||| |||||||||| |||||||||||||||||||||||| |
seq2  GAAAATA--TTA-GTATGAAACA-TGGACTCACTAGGATGGGATAGAT-G  175

seq1  TGAAGTAGTTTCTCCAAAGCTTCTGAATACATGTGGACTGGACATTGTAG  249
      || |||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  TG-AGTAGTTTCT-CAAAGCTTCTG-ATACATGTGGACTGGACATTGTAG  222

seq1  GTGTAATTCTTGCTTGATAGTTTTCATAATTTATCTTCCTGTTTATAGTT  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAA-TCTTGCTTGATAGTTTTCATAATTTATCTTCCTGTTTATAGTT  271

seq1  TATTAATGTTAGAGAAAAGGCCATTTTTTGTACTTACGGGGAAATGTAAT  349
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATTAATGTTAGAGAAAAGGCCA-TTTTTGTACTTACGGGGAAATGTAAT  320

seq1  GAGAATTTTGGTTTCATTTAAAACCCAGTTATGTTCTATGAATATGCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTTTGGTTTCATTTAAAACCCAGTTATGTTCTATGAATATGCTTT  370

seq1  TGTTTTAATACCAAGTATGGGATAAGATGCTGCGTCACAGCAGGCGATTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAATACCAAGTATGGGATAAGATGCTGCGTCACAGCAGGCGATTG  420

seq1  TGTTTTGAGTGAATTTTTTTTGCCAGTTCTCTGCTTTATTTTAGTTTAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAGTGAATTTTTTTTGCCAGTTCTCTGCTTTATTTTAGTTTAAT  470

seq1  TCTGGGGAACCTGGAGAGGGCATAAATGAGGGGGAGAGGGCTGCATCCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGAACCTGGAGAGGGCATAAATGAGGGGGAGAGGGCTGCATCCCC  520

seq1  CCAGCACTGCCCATCAAGAATTGCTTTTAATATAACTTCGCAACTGAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTGCCCATCAAGAATTGCTTTTAATATAACTTCGCAACTGAAAG  570

seq1  TGACACTAAGATAATCCAAAGTGAAGACTAAACTGTCTCTTTACAGGTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTAAGATAATCCAAAGTGAAGACTAAACTGTCTCTTTACAGGTGC  620

seq1  CTTGTTATTCCAGAATTGTGTGAGCACAATGCTCACCGATGCCCGCACAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATTCCAGAATTGTGTGAGCACAATGCTCACCGATGCCCGCACAG  670

seq1  AGGAGAACCCATCGGCCTTCTGCAAAGCTGATCCTAGAATCGAGTGGCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAACCCATCGGCCTTCTGCAAAGCTGATCCTAGAATCGAGTGGCTT  720

seq1  TACATGTTCAGTTTCAGGAGCGTGGTTCTCAATCTTACATAATCATAAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTTCAGTTTCAGGAGCGTGGTTCTCAATCTTACATAATCATAAGT  770

seq1  GTAAACTTTATTCAAAGGCACCTGCTATATAGCCCAGTGCTTTGTCATTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTTTATTCAAAGGCACCTGCTATATAGCCCAGTGCTTTGTCATTC  820

seq1  CATGAGGTCTTTTGGAAATAGAACCAGAGGAAAAAAGTTGGTGCAGTGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGTCTTTTGGAAATAGAACCAGAGGAAAAAAGTTGGTGCAGTGGA  870

seq1  AGCTGAGATTTAAGGAGAAAACATAAAATCCCAACCTTTAAAATAATATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGATTTAAGGAGAAAACATAAAATCCCAACCTTTAAAATAATATT  920

seq1  AATACGTTTCCTCATTTTTATTATAGGCATGTTACATAAACATATATACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACGTTTCCTCATTTTTATTATAGGCATGTTACATAAACATATATACC  970

seq1  TCCTAGCAAAATGAACCAGTTTCCTGCTGTGAATAAATTTATACCAAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCAAAATGAACCAGTTTCCTGCTGTGAATAAATTTATACCAAATT  1020

seq1  TTCCTAACTTGTATTAATCAAATGCAAATCAATTACTGCATACATCATTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAACTTGTATTAATCAAATGCAAATCAATTACTGCATACATCATTA  1070

seq1  TTACTTCATGAAATAAATTCTTTTTTATCAAATACCAGGCAAATAAAAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCATGAAATAAATTCTTTTTTATCAAATACCAGGCAAATAAAAAT  1120

seq1  TGCTTTTAATTTAGTTTTGAAATAGTAAGAGAATTC  1185
      ||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAATTTAGTTTTGAAATAGTAAGAGAATTC  1156