BAC Information

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BAC

Clone NameB6Ng01-144M21
Chromosome3 (Build37)3 (Build37)
Map Location 44,244,770 - 44,245,85572,033,042 - 72,033,210
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144M21.bB6Ng01-144M21.g
ACCDH942381DH942382
length1,095964
definitionDH942381|Mus musculus domesticus DNA, BAC clone: B6Ng01-144M21, 5' end.DH942382|Mus musculus domesticus DNA, BAC clone: B6Ng01-144M21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,244,770 - 44,245,855)(72,033,042 - 72,033,210)
sequence
gaattctttgtttagctctgtaagccattttttaatagggttatttggtt
ctctggagtctaacttcttgagttctttgtataaattgaatattagccct
ctcctttgatcctgagaagacctgataccccagtgcaggggaatgccagg
acagggaaacaggagtgggtgggttgctttgtagggcgagggagatggga
tagcggcttttcaaaggggaaaccaggaaatgtgataacacttgcaatat
aaatatagaaaatatctaataaaaataataaaataaaataaaaataacat
ccagtgctttccaccataaaaaaaaggtaagaaagaaaaaagggaataaa
caagcaaacaaaaaacaaactaaaaacttattacaactattccataagta
aagcacccattcctgggtatcttttgagctatttgcatattgcccattag
tgaggagataagcatctatgtcttttgtttcacatgtatctctgtttata
gaatcattgcatatgcttcaaaattagaacagacaacttacttctataaa
ctcagtaaactgttttggaaaaatatctggaagtttatgtaccagtgata
acgattatctagagaagaactagaaggcaatagcaattttgtttttgtca
atggttgattgtgtcaggagcaatatatatatatatatatatatatatat
atatatatatatatatatcatctgtaatagcaataggctcaacatagttt
ccaatagatgaatgttacatgtgcccaggataaatacactcctgcaggag
ctgtgcataagagtaagaaaaacaagtcaggactaggatgacatagtttc
tgactactacctatctttttatatattctacaatggaagaatgcttgttt
gtgtttttgcatgaatggaaaaaaagtctatagaataaggatgtccaaag
gcacataaaaataaatgaaatgaacttctctatgaaacaggaagctaagt
tcgttgtatcacaagcaacatccaattttggcatcgtagcttaggctcct
ttggaagacaaaatgaagttaagtatgcatctccagggaacaaac
gaattcactacactggggcattgagccttctgaggaccaatggcatctcc
tcgcattgatgcctgacaaggccatcttgggctacatatgcggctggagc
cataggtcgctccatgcatactcattggttagtggtttagttagtgattt
ttttttcctgtagtccaaatcaagctttatttacttgctctcaaattgct
tctttaacagtactttttttcttttttattattttctttatttacatttc
aaatgttatcccctttcctagtttcccctccaaaaatcccctatccagtc
ccccctcctcttactcacccacccactcccattcctggttctggcattcc
cctatactggggtatagagctttcacaggaccaagtgatttttaagaacc
agagttgatggaggactccaaggaaacagcttccttcagacacacaaggt
tgtcacaggtttgagctcacaatgactataagaacacttacgagatatgt
ataacttgaagtcagacaaaatcacaccacagagaattggaactggacat
atttccaccctgttcttgaaactacttttaactgatacctatgaggaaag
gaaaaatccattttgtcttatagattgacactaatttggggtggaaggaa
ttattattcttattatgttattttatcaataataaaatataatttattta
ttcattcattttagttcttcactttacatccacccgaatgttcctttccc
agatacctcctcccacaatctttcaccttcctccctccttctgctactta
tgttcagggaagcctaggtccaacctatgtatgctcttttgttggtggtt
cagtcactgagagccccaagggtgcagtttagttgaccctgttggtttct
agttcccaggctctatcactgtttggcttgtgggtgtctgtatctgtttg
agtcagctgctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44244770_44245855
seq2: B6Ng01-144M21.b_47_1141

seq1  GAATTCTTTGTTTAGCTCTGTAAGCCATTTTTTAATAGGGTTATTTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTAAGCCATTTTTTAATAGGGTTATTTGGTT  50

seq1  CTCTGGAGTCTAACTTCTTGAGTTCTTTGTATAAATTGAATATTAGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGTCTAACTTCTTGAGTTCTTTGTATAAATTGAATATTAGCCCT  100

seq1  CTCCTTTGATCCTGAGAAGACCTGATACCCCAGTGCAGGGGAATGCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTGATCCTGAGAAGACCTGATACCCCAGTGCAGGGGAATGCCAGG  150

seq1  ACAGGGAAACAGGAGTGGGTGGGTTGCTTTGTAGGGCGAGGGAGATGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAACAGGAGTGGGTGGGTTGCTTTGTAGGGCGAGGGAGATGGGA  200

seq1  TAGCGGCTTTTCAAAGGGGAAACCAGGAAATGTGATAACACTTGCAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGGCTTTTCAAAGGGGAAACCAGGAAATGTGATAACACTTGCAATAT  250

seq1  AAATATAGAAAATATCTAATAAAAATAATAAAATAAAATAAAAATAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGAAAATATCTAATAAAAATAATAAAATAAAATAAAAATAACAT  300

seq1  CCAGTGCTTTCCACCATAAAAAAAAGGTAAGAAAGAAAAAAGGGAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTTTCCACCATAAAAAAAAGGTAAGAAAGAAAAAAGGGAATAAA  350

seq1  CAAGCAAACAAAAAACAAACTAAAAACTTATTACAACTATTCCATAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAACAAAAAACAAACTAAAAACTTATTACAACTATTCCATAAGTA  400

seq1  AAGCACCCATTCCTGGGTATCTTTTGAGCTATTTGCATATTGCCCATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCCATTCCTGGGTATCTTTTGAGCTATTTGCATATTGCCCATTAG  450

seq1  TGAGGAGATAAGCATCTATGTCTTTTGTTTCACATGTATCTCTGTTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGATAAGCATCTATGTCTTTTGTTTCACATGTATCTCTGTTTATA  500

seq1  GAATCATTGCATATGCTTCAAAATTAGAACAGACAACTTACTTCTATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTGCATATGCTTCAAAATTAGAACAGACAACTTACTTCTATAAA  550

seq1  CTCAGTAAACTGTTTTGGAAAAATATCTGGAAGTTTATGTACCAGTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAAACTGTTTTGGAAAAATATCTGGAAGTTTATGTACCAGTGATA  600

seq1  ACGATTATCTAGAGAAGAACTAGAAGGCAATAGCAATTTTGTTTTTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTATCTAGAGAAGAACTAGAAGGCAATAGCAATTTTGTTTTTGTCA  650

seq1  ATGGTTGATTGTGTCAGGAGCAATATATATATATATATATATATATATAT  700
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  ATGGTTGATTGTGTCAGGAGCA--ATATATATATATATATATATATATAT  698

seq1  ATATATATATATATATATATCATCTGTAATAGCAATAGGCTCAACATAG-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATATATATATATATATATATCATCTGTAATAGCAATAGGCTCAACATAGT  748

seq1  TTCCAATAGATGAATGTTACATGTGCCCAGGAT-AATACACTCCTGCAGG  798
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTCCAATAGATGAATGTTACATGTGCCCAGGATAAATACACTCCTGCAGG  798

seq1  AGCTGTGCATAAGAGTAAGTAAAAACAAGTCAGGACTAGGATGACATAGT  848
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGCTGTGCATAAGAGTAAG-AAAAACAAGTCAGGACTAGGATGACATAGT  847

seq1  TTCTGACTACTA-CTATC-TTTTATATATTCTACAATGGAAGAATGCTTG  896
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  TTCTGACTACTACCTATCTTTTTATATATTCTACAATGGAAGAATGCTTG  897

seq1  TTTGTGTTTTTGCATGACTGG-AAAAAAGTCAATAGAATAAGGATGTCCA  945
      ||||||||||||||||| ||| ||||||||| ||||||||||||||||||
seq2  TTTGTGTTTTTGCATGAATGGAAAAAAAGTCTATAGAATAAGGATGTCCA  947

seq1  AAGGCACAT-AAAATAAATGAAATTGAATGTCTCTATG-AACAGG-AGCT  992
      ||||||||| ||||||||||||| ||||  |||||||| |||||| ||||
seq2  AAGGCACATAAAAATAAATGAAA-TGAACTTCTCTATGAAACAGGAAGCT  996

seq1  AAGTTTCGTTGTATCAC-AGCAACATCCAATTTT-GCATCGTAGCTATAG  1040
      ||| ||||||||||||| |||||||||||||||| |||||||||||   |
seq2  AAG-TTCGTTGTATCACAAGCAACATCCAATTTTGGCATCGTAGCTTAGG  1045

seq1  CTCCTTT-GAAGAC-AAATAGAGTTAAGTATGCATCTC--AGGAACAAAC  1086
      ||||||| |||||| ||||  |||||||||||||||||   |||||||||
seq2  CTCCTTTGGAAGACAAAATGAAGTTAAGTATGCATCTCCAGGGAACAAAC  1095

seq1: chr3_72033042_72033210
seq2: B6Ng01-144M21.g_286_446

seq1  TTTTTTATTAGATATTTTCTTTATTTACATTTCAAATGTTATCCAGTTTC  50
      ||||||||    ||||||||||||||||||||||||||||||||  ||||
seq2  TTTTTTAT----TATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTC  46

seq1  CTAGTTTCCCCTCCAAAAATCCCCTACCCCCTACCAGCTCGCCCTGCTCC  100
      |||||||||||||||||||||||||| ||  | ||  |||  | | ||| 
seq2  CTAGTTTCCCCTCCAAAAATCCCCTATCCAGTCCCCCCTCCTCTTACTC-  95

seq1  CCAACCCACCTACTCCCATTCCTGGCCCTGGCATTCCCCTATACTGGGGC  150
         ||||||| ||||||||||||||  |||||||||||||||||||||| 
seq2  ---ACCCACCCACTCCCATTCCTGGTTCTGGCATTCCCCTATACTGGGGT  142

seq1  ATAGAACCTTCACAGGACC  169
      ||||| | |||||||||||
seq2  ATAGAGCTTTCACAGGACC  161