BAC Information

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BAC

Clone NameB6Ng01-144N04
Chromosome3 (Build37)
Map Location 61,664,055 - 61,665,277
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040501, EG666853, P2ry1, Rap2b, LOC666891
Downstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144N04.bB6Ng01-144N04.g
ACCDH942395DH942396
length1,2041,220
definitionDH942395|Mus musculus domesticus DNA, BAC clone: B6Ng01-144N04, 5' end.DH942396|Mus musculus domesticus DNA, BAC clone: B6Ng01-144N04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatctattcaaatataattatgtttctaatttatttttatttct
gcagtatctacatacatcactccagttttgtagactcatcccccaattat
tttattctttactatgctgcatgtaggccaaagacaaggaacttccagac
ttaatttgtattaaatgaggtcacatggttagggttcctaaagaagaaaa
atgcagcaataaggcaaaagtgagagataagtagtcccaggattgcctag
agcttgggattccatcttccagaatgataagaaattaacacctgttatgg
aagccttccactccagattatggagccctcctccagtccacaatataaaa
ggtcctgtaatcattgaacattttttaaaatgagtccaaatgctcaaagc
actacatacaagtgtattcattctctgaattccccatttatggtaggcta
gataatggcctctctaaagatacccatatctaaattctcagaatctgtga
atatgtcaatttaagccactttgaaattgggttagactgtgagatgatac
tggttatcctaatgtaagactaagataccttatgaagtaggcaggaagaa
aaagaagcagaaagtaaggaagggaatatgaagcaaagaggataaaagat
aaatgttcttgaagatggagaaaaaactaccatctaaaaagttcaaatag
catcaataaaataaaaacaaaaaagaagaataaacaagggccgtattttc
tgctagagcttccagatagttgtactcttgtagaaattaatttgacttag
cccactgagtcagaatttgacatgatgtggattaagaactgaaaggataa
gaaccatttctttctttaatattctatgtccctgtgattagtggtagcat
cagtaagagggatatgcacaattgctcagcagtccgtaaaggctccaact
ttacctttatgtgtgcagttaatgatatctggtcataattattaaactca
tgtttgatccctgttcttcatagagatgctgcacttgagtttttttacat
tttcattattcccaaagccccctccccctgtctatgtcctcttgtcagct
ctgtctcaaactacgctttggtctgtttgcttcccttcactgatatttat
gggaactcatgcttgtttaccaagttctcgaattccttaatgtctgcctt
tgac
gaattcaatgaaaaggaatgcccaaaatacccaaacttaagggacacgat
gaaagtagttcttttttttttaaattattttatttaaaatttttttgctc
tccctattacaaaagaaagttcatagcactaagtgcctttatactagaaa
cttatcagcaaaccataaacctctagaacaaaatgaagcaaacacatccc
taaggagtagatgttgggaaatgaaaaaactgaggactgggatcaataaa
atgaaagcaaagagcaatacaaagaattaataaacgaactagttctttaa
gaaactcaacaagagagattagcccttatccaaactaactaaagacacag
tgagaatatccaaatttaaaaaattataaatgagaaggggacataacaac
agacactgagaaaatccaaagaatcattaggacatacttcaaaaaacctg
tactttacaaaacttgaaaatctacaaaaaatgtacaattttctcaatag
acaccagttatcaaagttaaatcaagataagcacacaatttaaatagacc
taatccctaagaaaatataagaagtcattaaatcactccaacccccccaa
aaaaatccaagtatcagatgattctccaaataattctacaagattttcaa
agaaaacataataacaatactccttaaattattccacacaagataaataa
aaagaactttgtccaattcattttatgaggctacagtcacagtgatacca
aaaccacacaaagatacaacaaagagaaacacagactaatttcgctcatg
aatattgatgttaaaatactcacaaactgaatctaagaatacgtcaaaaa
atatcaaccaccattatcaagtagtcttcatcccagagatgcagagatga
ttcacatacaaaatctgtctatgtaagacatatataaacaaactgaaaga
gaaaattactatcttctcatagaagctgaaaacttagacaaattcatacc
cttcatgataaagtctttgaaaatgagaagatctataggacatactttat
cataaataaggcactttatactaggcttatagccaacatcataaatggag
aacttaaccattcacctgccatcaagaacagacaaggctattctatcaat
tgattgaagctagcctagcataagacacaaaggaatatatggaatacaca
cctggtaaagagagaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_61664055_61665277
seq2: B6Ng01-144N04.b_48_1251 (reverse)

seq1  GTCAAAGGGCAGACATTTATGGAATCGAGAGAAACTTGGGTAAACAACCA  50
      |||||| |||||||||| | | | |||||   ||||| ||||||||| ||
seq2  GTCAAA-GGCAGACATTAAGGAATTCGAG---AACTT-GGTAAACAAGCA  45

seq1  TGAGTTCCAATAAAATAATTCAGTGAAGGGGAAGCAAACAGAACAAAAGC  100
      |||||||| || |||||  |||||||| ||||||||||||| || |||||
seq2  TGAGTTCCCAT-AAATA--TCAGTGAA-GGGAAGCAAACAG-ACCAAAGC  90

seq1  GGTAGTTTTGGAGACAGAGCTGGACAAGAGGGACATAGGACAAGGGGGAG  150
       |||||||  ||||||||||| ||||||| ||||||| ||| ||||||||
seq2  -GTAGTTT--GAGACAGAGCT-GACAAGA-GGACATA-GAC-AGGGGGAG  133

seq1  GGGGCTTTGGGAATAATGGAAAATGTTAAAAAATACTCAAGTGCAGCATC  200
      ||||||||||||||||| ||||||||  ||||| ||||||||||||||||
seq2  GGGGCTTTGGGAATAAT-GAAAATGT--AAAAAAACTCAAGTGCAGCATC  180

seq1  TTCTATGAAG-ACAGGGATCAAACATGAGTTTAATAATTATGACCAGATA  249
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  -TCTATGAAGAACAGGGATCAAACATGAGTTTAATAATTATGACCAGATA  229

seq1  TCATTAACTGCACCACATAAAGGTAAAGTTGGAGCC-TTACGGACTGCTG  298
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  TCATTAACTGCA-CACATAAAGGTAAAGTTGGAGCCTTTACGGACTGCTG  278

seq1  AGCAATTGTGCATATCCCTCTTACTGATGCTACCACTAATCACAGGGACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTGTGCATATCCCTCTTACTGATGCTACCACTAATCACAGGGACA  328

seq1  TAGAATATTAAAGAAAGAAATGGTTCTTATCC-TTCAGTTCTTAATCCAC  397
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGAATATTAAAGAAAGAAATGGTTCTTATCCTTTCAGTTCTTAATCCAC  378

seq1  ATCATGTCAAATTCTGACTCAGTGGGCTAAGTCAAATTAATTTCTACAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTCAAATTCTGACTCAGTGGGCTAAGTCAAATTAATTTCTACAAG  428

seq1  AGTACAACTATCTGGAAGCTCTAGCAGAAAATACGGCCCTTGTTTATTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAACTATCTGGAAGCTCTAGCAGAAAATACGGCCCTTGTTTATTCT  478

seq1  TCTTTTTTGTTTTTATTTTATTGATGCTATTTGAACTTTTTAGATGGTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTGTTTTTATTTTATTGATGCTATTTGAACTTTTTAGATGGTAG  528

seq1  TTTTTTCTCCATCTTCAAGAACATTTATCTTTTATCCTCTTTGCTTCATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCCATCTTCAAGAACATTTATCTTTTATCCTCTTTGCTTCATA  578

seq1  TTCCCTTCCTTACTTTCTGCTTCTTTTTCTTCCTGCCTACTTCATAAGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCCTTACTTTCTGCTTCTTTTTCTTCCTGCCTACTTCATAAGGT  628

seq1  ATCTTAGTCTTACATTAGGATAACCAGTATCATCTCACAGTCTAACCCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGTCTTACATTAGGATAACCAGTATCATCTCACAGTCTAACCCAA  678

seq1  TTTCAAAGTGGCTTAAATTGACATATTCACAGATTCTGAGAATTTAGATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGTGGCTTAAATTGACATATTCACAGATTCTGAGAATTTAGATA  728

seq1  TGGGTATCTTTAGAGAGGCCATTATCTAGCCTACCATAAATGGGGAATTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATCTTTAGAGAGGCCATTATCTAGCCTACCATAAATGGGGAATTC  778

seq1  AGAGAATGAATACACTTGTATGTAGTGCTTTGAGCATTTGGACTCATTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGAATACACTTGTATGTAGTGCTTTGAGCATTTGGACTCATTTT  828

seq1  AAAAAATGTTCAATGATTACAGGACCTTTTATATTGTGGACTGGAGGAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGTTCAATGATTACAGGACCTTTTATATTGTGGACTGGAGGAGG  878

seq1  GCTCCATAATCTGGAGTGGAAGGCTTCCATAACAGGTGTTAATTTCTTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATAATCTGGAGTGGAAGGCTTCCATAACAGGTGTTAATTTCTTAT  928

seq1  CATTCTGGAAGATGGAATCCCAAGCTCTAGGCAATCCTGGGACTACTTAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGGAAGATGGAATCCCAAGCTCTAGGCAATCCTGGGACTACTTAT  978

seq1  CTCTCACTTTTGCCTTATTGCTGCATTTTTCTTCTTTAGGAACCCTAACC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACTTTTGCCTTATTGCTGCATTTTTCTTCTTTAGGAACCCTAACC  1028

seq1  ATGTGACCTCATTTAATACAAATTAAGTCTGGAAGTTCCTTGTCTTTGGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCTCATTTAATACAAATTAAGTCTGGAAGTTCCTTGTCTTTGGC  1078

seq1  CTACATGCAGCATAGTAAAGAATAAAATAATTGGGGGATGAGTCTACAAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGCAGCATAGTAAAGAATAAAATAATTGGGGGATGAGTCTACAAA  1128

seq1  ACTGGAGTGATGTATGTAGATACTGCAGAAATAAAAATAAATTAGAAACA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTGATGTATGTAGATACTGCAGAAATAAAAATAAATTAGAAACA  1178

seq1  TAATTATATTTGAATAGATAGAATTC  1223
      ||||||||||||||||||||||||||
seq2  TAATTATATTTGAATAGATAGAATTC  1204