BAC Information

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BAC

Clone NameB6Ng01-145A05
Chromosome3 (Build37)
Map Location 32,272,197 - 32,474,558
singlet/doubletdoublet
Overlap genePik3ca, Kcnmb3, Zfp639, Mfn1
Upstream geneLOC625125, Kcnmb2, LOC665514, Zmat3, 4930429B21Rik
Downstream geneGnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145A05.bB6Ng01-145A05.g
ACCDH942538DH942539
length1,1111,096
definitionDH942538|Mus musculus domesticus DNA, BAC clone: B6Ng01-145A05, 5' end.DH942539|Mus musculus domesticus DNA, BAC clone: B6Ng01-145A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,272,197 - 32,273,323)(32,473,454 - 32,474,558)
sequence
gaattcagaaatctcaggaggcctaacccatgggcagagagggctgatat
ggagtggaacagatctctggtgttctgctatagagtcaggctccatcggc
cagtcaagcagtgaaagtgaggtgtggagccacggaggccgtagtgatga
agggcaggctgaacaaggtccacacaatgaacaggtagggtgacaactgg
aggcagccaagtcagctgaggtagccaagcagagcctctggtacagcagc
agtcctgcctatcagtccattacgggcagcagttaggtgcccttctctta
gtgagcttcagttgaggaaattgcaccctgtcttctacctggtgtcctct
gggggtcgtcaggcctgcggtgatttccatgcccgtgtgcacatgagatc
ctggtcaagcctggtgagtttgtaaggtacttttaggtacttagtacttt
taggcagaagttatctatccagtctgtacttcgtggatggttccagacag
acagacggtgctgtttatgtgcatgatgaagcacagagtcatcctgctct
gaaaacagaggcaaaagccgcttgtaaaacaggatctctcagggtcaggt
acagccccaaagctgctgcttttgctgttgcttgtgttttaagacagggt
ctcacaatagtcttaaccggtctggaattcccaatataagccaggctgcc
cacccttgcctccagtgtgctgggattagagtgcactatcatatccaaca
aaacgccactgtttccacagtatgtagtgacaccaggctagactcagcct
gaatttaaaacgtgacaaggacattcctttcagtatgaaatctctttctt
cccatgtcattttcaagcatgtcccagatgagttagtctataattggact
tagttcctggcctggccaggaaaggaacacagacagaacctaggaggtct
tctggtgtccacctggaagtgacctcttcaggaccttttcttgtagacag
ctattgcctgcagatgatctagatctagctacaatctccctcattcatac
gtcaggttcctctttccaccagagccatgctgcaagggcatctactgaga
tgagtaacagt
gaattctttttatcaggacagctgcactttcactgcttcaaatgcaagta
tcctcaggccaggaaagaacaggttagttttgggttttctctgagtcagg
tcttggggtctaggatgacctcgaactcactatgtccttgagcatgactt
tgaacctgctcctcctagatacctcattagcatagagaactctgtgttct
gtgctaggtggccagtggtcatgctctttatgtggggagctgtggtcagg
tgttccaggcaggaatctggtccagagtacgtgaaacactactgtcctca
ggtgggtgccagggcttctgaccccactgacctcaccaagtttcctggca
tgatccactgccctcagccctgaaaggagactttgaacctacttctgtct
cccaggcgctgggcacccaaatgtagccaaaatgcccaactgtcatcttt
ttttattggatattttctttatttacatttcaaatgttatccccttaccc
agttcccgttccctgtccccgaaactgcttctatgaagctccaagtgtca
tttttaattactgaactttgttctctcctagcctaacagcgagtaaagtc
ctgtacgtcccgtttaattcagacgagctctcctgctgcaactgcctttt
accggaatcccaaagcagagagggttaaatgtggacagtcgttttctttt
ttaaaaaacacttatttttcctttctgagtgttttgcctatgtgtgtata
catgtaccactcgcatgccttgtgctgactaaagccagaacagggcacag
tatctcttgaaagtggagttactggtggctgctgggtaccctttgctgta
tagaggtttttcagtttgtaagttccatgtggatgatggaacccaccaaa
cccaagtaggttctctacaaaagcagctctaaatgatagatatctctcca
gtcgcaaacatggaaattcttaatttaaggcacgcagtgtttatttaaaa
gttatatttacaaagtcattaatgacttcatgtacttcattttgatgtga
gaaaaaactagaatattcatgttattgaagtgaaaagtttgcctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_32272197_32273323
seq2: B6Ng01-145A05.b_47_1157

seq1  GAATTCAGAAATCTCAGGAGGCCTAACCCATGGGCAGAGAGGGCTGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCTCAGGAGGCCTAACCCATGGGCAGAGAGGGCTGATAT  50

seq1  GGAGTGGAACAGATCTCTGGTGTTCTGCTATAGAGTCAGGCTCCATCGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGAACAGATCTCTGGTGTTCTGCTATAGAGTCAGGCTCCATCGGC  100

seq1  CAGTCAAGCAGTGAAAGTGAGGTGTGGAGCCACGGAGGCCGTAGTGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAGCAGTGAAAGTGAGGTGTGGAGCCACGGAGGCCGTAGTGATGA  150

seq1  AGGGCAGGCTGAACAAGGTCCACACAATGAACAGGTAGGGTGACAACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGCTGAACAAGGTCCACACAATGAACAGGTAGGGTGACAACTGG  200

seq1  AGGCAGCCAAGTCAGCTGAGGTAGCCAAGCAGAGCCTCTGGTACAGCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCAAGTCAGCTGAGGTAGCCAAGCAGAGCCTCTGGTACAGCAGC  250

seq1  AGTCCTGCCTATCAGTCCATTACGGGCAGCAGTTAGGTGCCCTTCTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGCCTATCAGTCCATTACGGGCAGCAGTTAGGTGCCCTTCTCTTA  300

seq1  GTGAGCTTCAGTTGAGGAAATTGCACCCTGTCTTCTACCTGGTGTCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTTCAGTTGAGGAAATTGCACCCTGTCTTCTACCTGGTGTCCTCT  350

seq1  GGGGGTCGTCAGGCCTGCGGTGATTTCCATGCCCGTGTGCACATGAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTCGTCAGGCCTGCGGTGATTTCCATGCCCGTGTGCACATGAGATC  400

seq1  CTGGTCAAGCCTGGTGAGTTTGTAAGGTACTTTTAGGTACTTAGTACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCAAGCCTGGTGAGTTTGTAAGGTACTTTTAGGTACTTAGTACTTT  450

seq1  TAGGCAGAAGTTATCTATCCAGTCTGTACTTCGTGGATGGTTCCAGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGAAGTTATCTATCCAGTCTGTACTTCGTGGATGGTTCCAGACAG  500

seq1  ACAGACGGTGCTGTTTATGTGCATGATGAAGCACAGAGTCATCCTGCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACGGTGCTGTTTATGTGCATGATGAAGCACAGAGTCATCCTGCTCT  550

seq1  GAAAACAGAGGCAAAAGCCGCTTGTAAAACAGGATCTCTCAGGGTCAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGAGGCAAAAGCCGCTTGTAAAACAGGATCTCTCAGGGTCAGGT  600

seq1  ACAGCCCCAAAGCTGCTGCTTTTGCTGTTGCTTGTGTTTTAAGACAGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCCAAAGCTGCTGCTTTTGCTGTTGCTTGTGTTTTAAGACAGGGT  650

seq1  CTCACAATAGTCTTAACCGGTCTGGAATTCCCAATATAAGCCAGGCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAATAGTCTTAACCGGTCTGGAATTCCCAATATAAGCCAGGCTGCC  700

seq1  CACCCTTGCCTCCAGTGTGCTGGGATTAGAGTGCACTATCATATCCAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTGCCTCCAGTGTGCTGGGATTAGAGTGCACTATCATATCCAACA  750

seq1  AAACGCCACTGTTTCCACAGTATGTAGTGACACCAGGCTAGACTCAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCCACTGTTTCCACAGTATGTAGTGACACCAGGCTAGACTCAGCCT  800

seq1  GAATTTAAAACGTGACAAGGACATTCCTTTCAGTATGAAATCTCTTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAAAACGTGACAAGGACATTCCTTTCAGTATGAAATCTCTTTCTT  850

seq1  CCCATGTCATTTTCAAGCATGTCCCAGATGAGTTAGTCTATAATTGGACC  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCCATGTCATTTTCAAGCATGTCCCAGATGAGTTAGTCTATAATTGGA-C  899

seq1  TTAGTTCCTGGCCTGGCCAGGAAAGGAACAACAGACAGAACCTAGGAGGT  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTAGTTCCTGGCCTGGCCAGGAAAGGAAC-ACAGACAGAACCTAGGAGGT  948

seq1  CTTCTGGTGTCCACCTGGAAGTGACCTCTTCAGGACCTTTTCTTGTAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CTTCTGGTGTCCACCTGGAAGTGACCTCTTCAGGACCTTTTCTTGTAG--  996

seq1  ACAGCTATTGCCTGCAGATGAATCCTAGATCCTAGCTACAAATCT-CCTC  1049
      |||||||||||||||||||||   |||||| |||||||| ||||| ||||
seq2  ACAGCTATTGCCTGCAGATGA--TCTAGAT-CTAGCTAC-AATCTCCCTC  1042

seq1  ATTCATACGTCAGGGTCCCTCTTTCCCACCCAGAGCCCAGTGCTGCCAGG  1099
      |||||||||||| ||| |||||||||   ||||||||   |||||| |||
seq2  ATTCATACGTCA-GGTTCCTCTTTCC--ACCAGAGCC--ATGCTGCAAGG  1087

seq1  GCATTCCTACCTGAGATGAGTACACAGT  1127
      ||||  ||| |||||||||||| |||||
seq2  GCAT--CTA-CTGAGATGAGTA-ACAGT  1111

seq1: chr3_32473454_32474558
seq2: B6Ng01-145A05.g_66_1161 (reverse)

seq1  TAAGGCAAACTTTTTCACCATCAATAACATGAATA-TCTAGTTTTGTCTC  49
      |||||||||| |||||| | ||||||||||||||| ||||||||| ||||
seq2  TAAGGCAAAC-TTTTCA-CTTCAATAACATGAATATTCTAGTTTTTTCTC  48

seq1  ACATTCAAAATGTAGTTACATGAAGTCATTAATGACTTTGTAAATATAAC  99
      ||| |||||||| || ||||||||||||||||||||||||||||||||||
seq2  ACA-TCAAAATGAAG-TACATGAAGTCATTAATGACTTTGTAAATATAAC  96

seq1  TTTTAAATTAACTTCCTGCGTTGCTTTAAATTAAGAATTTCCATGTTTGC  149
      |||||||| |||   ||||| ||| |||||||||||||||||||||||||
seq2  TTTTAAATAAAC--ACTGCG-TGCCTTAAATTAAGAATTTCCATGTTTGC  143

seq1  GACTGGAGAGATATCTATCATTTAAGAGCTGCTTTTGTAGAGGACCCTAC  199
      ||||||||||||||||||||||| ||||||||||||||||| || |||||
seq2  GACTGGAGAGATATCTATCATTT-AGAGCTGCTTTTGTAGA-GAACCTAC  191

seq1  TTGGGTTTGGTGGGTTCCATCATCCACATGGAACTTACAAAACTGAAAAA  249
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGGGTTTGGTGGGTTCCATCATCCACATGGAACTTAC-AAACTGAAAAA  240

seq1  CCTCTATACAGCAAAGGGTACCCAGCAGCCACCTGTAACTCCACTTTCAA  299
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTCTATACAGCAAAGGGTACCCAGCAGCCACCAGTAACTCCACTTTCAA  290

seq1  GAGATACTGTGCCCTGTTCTGGCTTTAGTCAGCACAAGGCATGCGAGTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACTGTGCCCTGTTCTGGCTTTAGTCAGCACAAGGCATGCGAGTGG  340

seq1  TACATGTATACACACATAGGCAAAACACTCAGAAAGGAAAAATAAGTGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTATACACACATAGGCAAAACACTCAGAAAGGAAAAATAAGTGTT  390

seq1  TTTTAAAAAAGAAAACGACTGTCCACATTTAACCCTCTCTGCTTTGGGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAAGAAAACGACTGTCCACATTTAACCCTCTCTGCTTTGGGAT  440

seq1  TCCGGTAAAAGGCAGTTGCAGCAGGAGAGCTCGTCTGAATTAAACGGGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGTAAAAGGCAGTTGCAGCAGGAGAGCTCGTCTGAATTAAACGGGAC  490

seq1  GTACAGGACTTTACTCGCTGTTAGGCTAGGAGAGAACAAAGTTCAGTAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGACTTTACTCGCTGTTAGGCTAGGAGAGAACAAAGTTCAGTAAT  540

seq1  TAAAAATGACACTTGGAGCTTCATAGAAGCAGTTTCGGGGACAGGGAACG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGACACTTGGAGCTTCATAGAAGCAGTTTCGGGGACAGGGAACG  590

seq1  GGAACTGGGTAAGGGGATAACATTTGAAATGTAAATAAAGAAAATATCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGGGTAAGGGGATAACATTTGAAATGTAAATAAAGAAAATATCCA  640

seq1  ATAAAAAAAGATGACAGTTGGGCATTTTGGCTACATTTGGGTGCCCAGCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAGATGACAGTTGGGCATTTTGGCTACATTTGGGTGCCCAGCG  690

seq1  CCTGGGAGACAGAAGTAGGTTCAAAGTCTCCTTTCAGGGCTGAGGGCAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGACAGAAGTAGGTTCAAAGTCTCCTTTCAGGGCTGAGGGCAGT  740

seq1  GGATCATGCCAGGAAACTTGGTGAGGTCAGTGGGGTCAGAAGCCCTGGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATGCCAGGAAACTTGGTGAGGTCAGTGGGGTCAGAAGCCCTGGCA  790

seq1  CCCACCTGAGGACAGTAGTGTTTCACGTACTCTGGACCAGATTCCTGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTGAGGACAGTAGTGTTTCACGTACTCTGGACCAGATTCCTGCCT  840

seq1  GGAACACCTGACCACAGCTCCCCACATAAAGAGCATGACCACTGGCCACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACCTGACCACAGCTCCCCACATAAAGAGCATGACCACTGGCCACC  890

seq1  TAGCACAGAACACAGAGTTCTCTATGCTAATGAGGTATCTAGGAGGAGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAGAACACAGAGTTCTCTATGCTAATGAGGTATCTAGGAGGAGCA  940

seq1  GGTTCAAAGTCATGCTCAAGGACATAGTGAGTTCGAGGTCATCCTAGACC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAAAGTCATGCTCAAGGACATAGTGAGTTCGAGGTCATCCTAGACC  990

seq1  CCAAGACCTGACTCAGAGAAAACCCAAAACTAACCTGTTCTTTCCTGGCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACCTGACTCAGAGAAAACCCAAAACTAACCTGTTCTTTCCTGGCC  1040

seq1  TGAGGATACTTGCATTTGAAGCAGTGAAAGTGCAGCTGTCCTGATAAAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATACTTGCATTTGAAGCAGTGAAAGTGCAGCTGTCCTGATAAAAA  1090

seq1  GAATTC  1105
      ||||||
seq2  GAATTC  1096