BAC Information

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BAC

Clone NameB6Ng01-145D20
Chromosome3 (Build37)
Map Location 121,161,481 - 121,162,482
singlet/doubletsinglet
Overlap geneSlc44a3
Upstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3
Downstream geneA730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145D20.bB6Ng01-145D20.g
ACCDH942701DH942702
length1,234995
definitionDH942701|Mus musculus domesticus DNA, BAC clone: B6Ng01-145D20, 5' end.DH942702|Mus musculus domesticus DNA, BAC clone: B6Ng01-145D20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaacaaaacatgtatgtacctttctgttgaaggccgcagaatga
caaaggaaattaagttgtaaataaatagaaaaataaactatgttcatgga
ttggacactggacatagtaaagatctcgattcttctgaagctattctgtc
cacttaacacagctcctgtcaacgtcccagcaagaatgtttgcaaactta
gataacagctctgttgagtttctatggaaaagcagcagaattatagcagt
tgaaaagggtattttgaaaagaaaattaaagtagaagaaatcattatatc
tatttaagatacattgtatcactatgatgaggagaataatggacatagtg
gaaggacagatagatctgtggaacagaagaggaaatacaaataaatctat
ctacactataattacaacattttaccctatcctctctccaaactctaaaa
ttcatggcctcttttatatcaaattgttattgtatgcacatatatacaca
tacacatacatatacacacatacatatcccaaatataacctgctcagtcc
acaaattgctaatcaagtatatgctcccagggctgagcatttggtgttgg
taaccaactgctgtgcttctagccagagaagactaattctcccactctga
gcattctttggttgtctgtagtgctttgtatagatgaaaactattacaga
aaatcacaaccaatcaaaatacacagttgtagagtccagccccactgttg
ccagctgcaaactacccccacagctaaggttcaaggaacattgtgaagga
agagctggaaagatcctaagagtcagaagatcaggaagtgagccatgaga
ttgtatctcctaaagatcaacatgcgtgaagtctcaccaacatgactgct
ccaatatgagctgaagaaagagaagatagacatgccaaaatagatgaggg
aaagccatgaggccttagtcccatatgaaattgactgatttttgacaaga
gcagacaagtctacagaagaggaacattacagaatgagatgattgaccag
tgctgacatcttaccaaaatactcaaatggatcatatgtatataaatggt
gatttgatgtttgagaaaatatatggaaaaaatactagatcctgaatcag
agttttaaatataaacctattttaactgaagttcccagaggaaaggtaat
gtctttcaattaaagatgcactatataagaacct
gaattctctgaaacgcaagggggagttattacatgtgtcatgtaaatgat
cctaaagccaggcatgaggtgtgctgtttgattagagcaggctaacccac
agctaagtgtgggaaagggcagtgctgtcacgggggaagctgctcggtca
caccctctgaccttgtctcaggtcaaggctgactgatggcctcgggtggt
tttgtaaagacagataagagatgttgaacccacagaaaggatgtatgctt
gttcctcctgtggtggcttgcttagatgcttctgggagtgccctgtaaat
cactgtaggagactgggagctaaatgaattctgtggtactattaaagaaa
aaatatctaaagtggtcctgagctgtcaggctgtttcttgtcaaattgca
aaagtggttaggaaagcaaagggaaggagccttgtattagatctcacgtg
ctggcctgccaagtcagtcagattgtgtttcctgttagaatgggagttcc
acacggcatctgggcccacgaggctcctgtcctcatgttcaaagtttcca
tttgcttagggcttttaaaaggaaaagatcttctgtttcggtatgtttaa
aaaataattaaaaaaaaaaaaaaagctgtcagacaagtctcattttgggc
aggggttggttgagcaacacctttctataatgtttgctggtgtgtgaaac
tcccgcctgcttgcagccggctgggtctcctcgtgttcagcagcctcccc
tgtgtgtgtctgctcttgaccttccttccctcactagtctagagctataa
cttggcatgctgaaagcctctcgtagcatgtgtccaggctaggaagaatg
agagaaacgcctgccctgccacaagagcattaatctaggtttgttagatt
tcttgctaacaaaatcttctttaaaaaaaaaaaaagaaagaaaaggatga
ccaaacaaaggtgaggtgtaccattttatttattttttgtggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_121161481_121162482
seq2: B6Ng01-145D20.g_66_1060

seq1  GAATTCTCTGAAACGCAAGGGGGAGTTATTACATGTGTCATGTAAATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAACGCAAGGGGGAGTTATTACATGTGTCATGTAAATGAT  50

seq1  CCTAAAGCCAGGCATGAGGTGTGCTGTTTGATTAGAGCAGGCTAACCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGCCAGGCATGAGGTGTGCTGTTTGATTAGAGCAGGCTAACCCAC  100

seq1  AGCTAAGTGTGGGAAAGGGCAGTGCTGTCACGGGGGAAGCTGCTCGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGTGTGGGAAAGGGCAGTGCTGTCACGGGGGAAGCTGCTCGGTCA  150

seq1  CACCCTCTGACCTTGTCTCAGGTCAAGGCTGACTGATGGCCTCGGGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCTGACCTTGTCTCAGGTCAAGGCTGACTGATGGCCTCGGGTGGT  200

seq1  TTTGTAAAGACAGATAAGAGATGTTGAACCCACAGAAAGGATGTATGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAAGACAGATAAGAGATGTTGAACCCACAGAAAGGATGTATGCTT  250

seq1  GTTCCTCCTGTGGTGGCTTGCTTAGATGCTTCTGGGAGTGCCCTGTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCCTGTGGTGGCTTGCTTAGATGCTTCTGGGAGTGCCCTGTAAAT  300

seq1  CACTGTAGGAGACTGGGAGCTAAATGAATTCTGTGGTACTATTAAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGGAGACTGGGAGCTAAATGAATTCTGTGGTACTATTAAAGAAA  350

seq1  AAATATCTAAAGTGGTCCTGAGCTGTCAGGCTGTTTCTTGTCAAATTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTAAAGTGGTCCTGAGCTGTCAGGCTGTTTCTTGTCAAATTGCA  400

seq1  AAAGTGGTTAGGAAAGCAAAGGGAAGGAGCCTTGTATTAGATCTCACGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGTTAGGAAAGCAAAGGGAAGGAGCCTTGTATTAGATCTCACGTG  450

seq1  CTGGCCTGCCAAGTCAGTCAGATTGTGTTTCCTGTTAGAATGGGAGTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTGCCAAGTCAGTCAGATTGTGTTTCCTGTTAGAATGGGAGTTCC  500

seq1  ACACGGCATCTGGGCCCACGAGGCTCCTGTCCTCATGTTCAAAGTTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGCATCTGGGCCCACGAGGCTCCTGTCCTCATGTTCAAAGTTTCCA  550

seq1  TTTGCTTAGGGCTTTTAAAAGGAAAAGATCTTCTGTTTCGGTATGTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTAGGGCTTTTAAAAGGAAAAGATCTTCTGTTTCGGTATGTTTAA  600

seq1  AAAATAATTAAAAAAAAAAAAAAAGCTGTCAGACAAGTCTCATTTTGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTAAAAAAAAAAAAAAAGCTGTCAGACAAGTCTCATTTTGGGC  650

seq1  AGGGGTTGGTTGAGCAACACCTTTCTATAATGTTTGCTGGTGTGTGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGGTTGAGCAACACCTTTCTATAATGTTTGCTGGTGTGTGAAAC  700

seq1  TCCCGCCTGCTTGCAGCCGGCTGGGTCTCCTCGTGTTCAGCAGCCTCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCCTGCTTGCAGCCGGCTGGGTCTCCTCGTGTTCAGCAGCCTCCCC  750

seq1  TGTGTGTGTCTGCTCTTGACCTTCCTTCCCTCACTAAGTCTAAGAGCTAT  800
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  TGTGTGTGTCTGCTCTTGACCTTCCTTCCCTCACT-AGTCT-AGAGCTAT  798

seq1  AACTTGGCATGCTGATAGCCTCTCGTAGCATGTGTCCAGGCTAGGAAGAA  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AACTTGGCATGCTGAAAGCCTCTCGTAGCATGTGTCCAGGCTAGGAAGAA  848

seq1  TGAGAGAAACGCCTGCCCTG-CACAAGAGCATTAATCTAGGTTTGTTAGA  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAGAGAAACGCCTGCCCTGCCACAAGAGCATTAATCTAGGTTTGTTAGA  898

seq1  TTTC-TGCTAACAAAATCCTCCTTTAAAAAAAAAAAAAAAGAAAAGAAAA  948
      |||| |||||||||||| || |||||||||||||||||    ||||||||
seq2  TTTCTTGCTAACAAAAT-CTTCTTTAAAAAAAAAAAAA---GAAAGAAAA  944

seq1  AGATGAACAAACAAAGGTGAGGTGTTAACATTTTTATTTATTTTTTGGTG  998
       ||||| ||||||||||||||||||  ||  ||||||||||||||| |||
seq2  GGATGACCAAACAAAGGTGAGGTGT--ACCATTTTATTTATTTTTT-GTG  991

seq1  GTGG  1002
      ||||
seq2  GTGG  995