BAC Information

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BAC

Clone NameB6Ng01-145M19
Chromosome3 (Build37)
Map Location 115,993,832 - 116,148,114
singlet/doubletdoublet
Overlap geneCdc14a
Upstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88
Downstream geneRtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145M19.bB6Ng01-145M19.g
ACCDH943108DH943109
length6211,082
definitionDH943108|Mus musculus domesticus DNA, BAC clone: B6Ng01-145M19, 5' end.DH943109|Mus musculus domesticus DNA, BAC clone: B6Ng01-145M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,993,832 - 115,994,452)(116,147,001 - 116,148,114)
sequence
gaattctcctgtctctgcctcccatctcaccccaggagcactgagattac
agatgtgtgtagcagcattcagcttttacagtggtcctatgggtttgaac
tcaggtccctgtgtttacacaagcaaatgttttacttcccttaaaacact
tctgttgagcgagtcagtcctgcttgttctggggtcttgcttgttctggg
ctcctgcactgccttcatcttcagcagcaaaaggccagtctcacagagca
gcttcatgggccgtgaaggaggactcaaacccctacttacttccacaaga
agtggggacctccatggtcctttaaccttcctgccagccaggcagcagca
ggagaacctaagcccgcacatcaaccacacgggaggtcccaggaggctta
ggattgggggtctgcacggggatctgctttcctctcggggagaaagagag
gaaagggagccatactgccaagtctagtcataaatgttgttttctgcagc
acaataacaaaagaagtggggcgagttggcaactccacccccacatttta
taattaattactggaaatttaccctattctggccaaaaagagggatgtgg
aggaggaggagtgggagaaga
gaattccaacactgtctcaaacacacagcaggcaacacttcctgaatgct
aggattgcacatgttaatgctataccttctatctccctacccctttaaaa
gaaagatttcatgtagctcaggttggccttgaactcactatgtagctgag
gatagccttaaggttgtggcccgtctgtctccatccacagaatgttggga
ttacagccataggaaccaccatacttggtttttgcagtgcttgtgatcca
gccccaggatctctggcttgctagggaagtgtctaatcgggttgcatccc
agacctaagcttctactctccaactccaggttttcttctttgcatcctga
gaactactatctctgggttgctccctcgccttctatgtctcgctttttat
ttaatacttattttttgaggatcatacatacaggacatggcacagtcttg
tggagatggcagtcacgggctcagaagccttgacacagcccatgcatgat
gagcaacctccagagagagcagctgatagagttttatgaaacagagaaga
ggggccaaaccagtgcgacagacgtagcgggtgagctagttagccaagaa
gatgttggcagttagaaacggtggcaatggcattctaaatgtcagacgtg
tggtgtcatggaaggcacggacctgtaaagggcacacagcatgtctggag
aacagagagtctcgtgctgtgaaagagcatgcgcacaaagtggaaagggg
ttagacaggctggcaaggtggcgagggtctcaaattcctgacaggtgtaa
acaccattcaaatcccaagaggtggcaaaagccagcagctctttagcatg
tgcccacctgctctatcactccgcactcatttctgacactttcctcttca
tttactccctctcccatgcaaatctttctgggtaactcagatgctcacac
tcacccatcagcattgatggtctctactgacaatcttcccaatatctgca
cggcatgatcttcttgtttctcagctcgctctgtaaccgttacaagcgag
attcctgtgtccctgtctggaagcgactttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_115993832_115994452
seq2: B6Ng01-145M19.b_48_668

seq1  GAATTCTCCTGTCTCTGCCTCCCATCTCACCCCAGGAGCACTGAGATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGTCTCTGCCTCCCATCTCACCCCAGGAGCACTGAGATTAC  50

seq1  AGATGTGTGTAGCAGCATTCAGCTTTTACAGTGGTCCTATGGGTTTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGTGTAGCAGCATTCAGCTTTTACAGTGGTCCTATGGGTTTGAAC  100

seq1  TCAGGTCCCTGTGTTTACACAAGCAAATGTTTTACTTCCCTTAAAACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCCCTGTGTTTACACAAGCAAATGTTTTACTTCCCTTAAAACACT  150

seq1  TCTGTTGAGCGAGTCAGTCCTGCTTGTTCTGGGGTCTTGCTTGTTCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGAGCGAGTCAGTCCTGCTTGTTCTGGGGTCTTGCTTGTTCTGGG  200

seq1  CTCCTGCACTGCCTTCATCTTCAGCAGCAAAAGGCCAGTCTCACAGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCACTGCCTTCATCTTCAGCAGCAAAAGGCCAGTCTCACAGAGCA  250

seq1  GCTTCATGGGCCGTGAAGGAGGACTCAAACCCCTACTTACTTCCACAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATGGGCCGTGAAGGAGGACTCAAACCCCTACTTACTTCCACAAGA  300

seq1  AGTGGGGACCTCCATGGTCCTTTAACCTTCCTGCCAGCCAGGCAGCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGACCTCCATGGTCCTTTAACCTTCCTGCCAGCCAGGCAGCAGCA  350

seq1  GGAGAACCTAAGCCCGCACATCAACCACACGGGAGGTCCCAGGAGGCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACCTAAGCCCGCACATCAACCACACGGGAGGTCCCAGGAGGCTTA  400

seq1  GGATTGGGGGTCTGCACGGGGATCTGCTTTCCTCTCGGGGAGAAAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGGGGTCTGCACGGGGATCTGCTTTCCTCTCGGGGAGAAAGAGAG  450

seq1  GAAAGGGAGCCATACTGCCAAGTCTAGTCATAAATGTTGTTTTCTGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAGCCATACTGCCAAGTCTAGTCATAAATGTTGTTTTCTGCAGC  500

seq1  ACAATAACAAAAGAAGTGGGGCGAGTTGGCAACTCCACCCCCACATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAACAAAAGAAGTGGGGCGAGTTGGCAACTCCACCCCCACATTTTA  550

seq1  TAATTAATTACTGGAAATTTACCCTATTCTGGCCAAAAAGAGGGATGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTACTGGAAATTTACCCTATTCTGGCCAAAAAGAGGGATGTGG  600

seq1  AGGAGGAGGAGTGGGAGAAGA  621
      |||||||||||||||||||||
seq2  AGGAGGAGGAGTGGGAGAAGA  621

seq1: chr3_116147001_116148114
seq2: B6Ng01-145M19.g_69_1150 (reverse)

seq1  GCAAAGGGTCGCTTTCAGAACAGGGGTACACAGGGGAATCTCGCTTGTAA  50
      |||||  ||||||| ||| ||||||  |||||  ||||||||||||||||
seq2  GCAAA--GTCGCTTCCAG-ACAGGG--ACACA--GGAATCTCGCTTGTAA  43

seq1  CGTGTTACAGAGCGAAGGCCTGAAGGAAACACAGAAGAATCATGCCGTGC  100
      || ||||||||||||    ||||  |||||| ||||| ||||||||||||
seq2  CG-GTTACAGAGCGA---GCTGA--GAAACA-AGAAG-ATCATGCCGTGC  85

seq1  AGATATTTGGGGAAAGATTTGTCCAGGTAGAGGAACCATCAAATGCTGAT  150
      |||||||   || |||| |||||   ||||||  |||||| |||||||||
seq2  AGATATT---GGGAAGA-TTGTC--AGTAGAG--ACCATC-AATGCTGAT  126

seq1  GGGTGAGGTGTGAGCATTCTTGAGTTACCCCAGAAAGATTTGCATGGGGA  200
      |||||| ||||||||||   ||||||| ||||||||||||||||| ||||
seq2  GGGTGA-GTGTGAGCAT--CTGAGTTA-CCCAGAAAGATTTGCAT-GGGA  171

seq1  GAGGGAGTAAATGAAGAGGAAAGTGTCAGAAAATGAGTGCGGAGTGATAA  250
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  GAGGGAGTAAATGAAGAGGAAAGTGTCAG-AAATGAGTGCGGAGTGAT-A  219

seq1  GAGCAGGTGGGCACATGCTAAAGAGCCTGCTGGCTTTTGCCACCTCTTGG  300
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGCAGGTGGGCACATGCTAAAGAG-CTGCTGGCTTTTGCCACCTCTTGG  268

seq1  GATTTGAATGGTGTTTACACCTGTCAGGAATTTGAGACCCTCGCCACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAATGGTGTTTACACCTGTCAGGAATTTGAGACCCTCGCCACCTT  318

seq1  GCCAGCCTGTCTAACCCCTTTCCACTTTGTGCGCATGCTCTTTCACAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGTCTAACCCCTTTCCACTTTGTGCGCATGCTCTTTCACAGCA  368

seq1  CGAGACTCTCTGTTCTCCAGACATGCTGTGTGCCCTTTACAGGTCCGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACTCTCTGTTCTCCAGACATGCTGTGTGCCCTTTACAGGTCCGTGC  418

seq1  CTTCCATGACACCACACGTCTGACATTTAGAATGCCATTGCCACCGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGACACCACACGTCTGACATTTAGAATGCCATTGCCACCGTTTC  468

seq1  TAACTGCCAACATCTTCTTGGCTAACTAGCTCACCCGCTACGTCTGTCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCCAACATCTTCTTGGCTAACTAGCTCACCCGCTACGTCTGTCGC  518

seq1  ACTGGTTTGGCCCCTCTTCTCTGTTTCATAAAACTCTATCAGCTGCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTTGGCCCCTCTTCTCTGTTTCATAAAACTCTATCAGCTGCTCTC  568

seq1  TCTGGAGGTTGCTCATCATGCATGGGCTGTGTCAAGGCTTCTGAGCCCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGGTTGCTCATCATGCATGGGCTGTGTCAAGGCTTCTGAGCCCGT  618

seq1  GACTGCCATCTCCACAAGACTGTGCCATGTCCTGTATGTATGATCCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCATCTCCACAAGACTGTGCCATGTCCTGTATGTATGATCCTCAA  668

seq1  AAAATAAGTATTAAATAAAAAGCGAGACATAGAAGGCGAGGGAGCAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTATTAAATAAAAAGCGAGACATAGAAGGCGAGGGAGCAACCC  718

seq1  AGAGATAGTAGTTCTCAGGATGCAAAGAAGAAAACCTGGAGTTGGAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGTAGTTCTCAGGATGCAAAGAAGAAAACCTGGAGTTGGAGAGT  768

seq1  AGAAGCTTAGGTCTGGGATGCAACCCGATTAGACACTTCCCTAGCAAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTAGGTCTGGGATGCAACCCGATTAGACACTTCCCTAGCAAGCC  818

seq1  AGAGATCCTGGGGCTGGATCACAAGCACTGCAAAAACCAAGTATGGTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCTGGGGCTGGATCACAAGCACTGCAAAAACCAAGTATGGTGGT  868

seq1  TCCTATGGCTGTAATCCCAACATTCTGTGGATGGAGACAGACGGGCCACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGGCTGTAATCCCAACATTCTGTGGATGGAGACAGACGGGCCACA  918

seq1  ACCTTAAGGCTATCCTCAGCTACATAGTGAGTTCAAGGCCAACCTGAGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAAGGCTATCCTCAGCTACATAGTGAGTTCAAGGCCAACCTGAGCT  968

seq1  ACATGAAATCTTTCTTTTAAAGGGGTAGGGAGATAGAAGGTATAGCATTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAATCTTTCTTTTAAAGGGGTAGGGAGATAGAAGGTATAGCATTA  1018

seq1  ACATGTGCAATCCTAGCATTCAGGAAGTGTTGCCTGCTGTGTGTTTGAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGCAATCCTAGCATTCAGGAAGTGTTGCCTGCTGTGTGTTTGAGA  1068

seq1  CAGTGTTGGAATTC  1114
      ||||||||||||||
seq2  CAGTGTTGGAATTC  1082