BAC Information

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BAC

Clone NameB6Ng01-145O17
Chromosome3 (Build37)
Map Location 117,551,709 - 117,722,966
singlet/doubletdoublet
Overlap geneSnx7, LOC100043260
Upstream geneFrrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e, 4833424O15Rik, EG668759
Downstream geneDpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145O17.bB6Ng01-145O17.g
ACCDH943196DH943197
length1,0711,036
definitionDH943196|Mus musculus domesticus DNA, BAC clone: B6Ng01-145O17, 5' end.DH943197|Mus musculus domesticus DNA, BAC clone: B6Ng01-145O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,722,424 - 117,722,966)(117,551,709 - 117,552,746)
sequence
gaattctttgtttatcccatttttactagggttatttagttctctggagt
ccaacttcttgagttctttgactatattggatgttagccctctatcagat
gtagagttggtaaagatcttttcccagtctgttggttgccgtttcgtcct
actgataatgtcctttgccttgcaattttataaggtcccatttattaatt
cttgaccaattcttgtcaatggcataagccattggttttctgttcaggaa
cttttcccctgtgctgatgtagtcgaggctcttccctactttctcttcta
ttagtttcactgtgtctggttttatgtggaggtctctgatccacttggac
ttgaactttgtacaaggagataaggatgaattgatttgcattcttttact
tgctaacctcctttggaaccagcaccacttgttgaaaatgctgtcttttt
tctactggatggttttagctccttttttgagatattttccctctaaagcc
cagggtggccttgaactcatgattctcctgcctcagtctcttgataattt
ggggatcttaactgattacttcaatgtgttttggtaaatgtgtgtgccca
tgtcagaaatagtgtaatcacaatacagatcatctacatcattctagaca
gtgtcacaatagtttccccattctaattgctggcttctcttccacatcca
tgtatactggtcttctctgctctgacttccatgtattagaatcccatgct
gtgttcttccttgtgtcaggatgtttgccattcaatgtaaaagttgtaaa
gttcattaatattagtcaatgaagtggacagtattctcaggtttgaaatg
aatgtaatatttgactgtataaacatacttctgttggtggatagtgactt
gatttctagttaatttatgtaaaataaactgtaaaacattctgatatgta
aagtttcttgttatattttcatgacatatatttgttttcatctgaaaaaa
aaaacatgaatattttgcctcagaactgtacatatttgctttgtaaagaa
gttttgtaatgggatagacat
gaattcagagctcccaagccaacattccatcggtatatacaaaaatttcg
ctcacaaaccatcccatggaaacagcaatttcctaaactggggaggttta
attggttaggccagtgtcctggagatttccctgacactgcatgtaattct
gagctccagctttccttgtgcccaacggctctgctcaccacagcccactt
cttctacctactaagtaattttgtgttctattttctccactgcaaaagca
gccttttgtagcgtgggaaggatctgggctggcttatgaaggctcacaat
tctgaggcatgcagcgcagtgtcataaaaatatgctcccatatccagcaa
agggagaaaattacaggctgaatatttagcagcatggatgatttctgtag
acggatttaaattaccgtgaatcactcaaaaaacactcttaaaacctcaa
taaaaccaactatccaacgtggtttagatttgttctctcccacaaagaga
aaagaaaatatggtgacattacttaaaaatgtaccttgatataaataact
gaaaggaatgagatacagagaagcaattaagccatttaaccttttgtggt
tggtgggtttgaaaaatgaatccttaacatatgttttcttctaacaaagg
attcatctccaccttctctttccccttccctcttcctcttccttgtctcc
caatgtggaaacctatagttattcaagactaccttaatcccttaagcatt
gaaaaaacatctttttgatccccccccccacacacacacacatgatagca
gaggggaaatgatctgtgtgacaagtctgtacttgaattatatttaatac
tcttttcactgccaattcaatgaaaacacatacccaagaccaagaaacca
agatctgaatatacataaagaagaaagccaatacattgcagaaattcatt
gtggtctaatatttactccaaagcaacagtcactgttaagaaaaacattc
aggcgacttcttgaaatcaatgtcacaaatggcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117722424_117722966
seq2: B6Ng01-145O17.b_587_1118 (reverse)

seq1  ATGTCTAATCCATTTACAAAACTACTTTTTACAAAGCAAATATGTACCAG  50
      |||||| ||||  ||||||||||  | ||||||||||||||||||| |||
seq2  ATGTCT-ATCCCATTACAAAACT--TCTTTACAAAGCAAATATGTA-CAG  46

seq1  TTTCTGAGGCAAAATA-TCATGTTTTTTTTTTTCAAGATGAAAACAAATA  99
       ||||||||||||||| |||||||||||||||   |||||||||||||||
seq2  -TTCTGAGGCAAAATATTCATGTTTTTTTTTT--CAGATGAAAACAAATA  93

seq1  TATGTTCATGAAAATATAACAAGAAAACTTTAACATATCAGAATGTTTTA  149
      |||| |||||||||||||||||| ||||||| ||||||||||||||||| 
seq2  TATG-TCATGAAAATATAACAAG-AAACTTT-ACATATCAGAATGTTTT-  139

seq1  ACAGTTTATTTTACAATAAATTAACTAGAAATCAAGTCACTATCCACCAA  199
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACAGTTTATTTTAC-ATAAATTAACTAGAAATCAAGTCACTATCCACCAA  188

seq1  CAGAAGTATGTTTATACAGTCAAATATTACATTCATTTCAAACCTGAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTATGTTTATACAGTCAAATATTACATTCATTTCAAACCTGAGAA  238

seq1  TACTGTCCACTTCATTGACTAATATTAATGAACTTTACAACTTTTACATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCCACTTCATTGACTAATATTAATGAACTTTACAACTTTTACATT  288

seq1  GAATGGCAAACATCCTGACACAAGGAAGAACACAGCATGGGATTCTAATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCAAACATCCTGACACAAGGAAGAACACAGCATGGGATTCTAATA  338

seq1  CATGGAAGTCAGAGCAGAGAAGACCAGTATACATGGATGTGGAAGAGAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAGTCAGAGCAGAGAAGACCAGTATACATGGATGTGGAAGAGAAG  388

seq1  CCAGCAATTAGAATGGGGAAACTATTGTGACACTGTCTAGAATGATGTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAATTAGAATGGGGAAACTATTGTGACACTGTCTAGAATGATGTAG  438

seq1  ATGATCTGTATTGTGATTACACTATTTCTGACATGGGCACACACATTTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGTATTGTGATTACACTATTTCTGACATGGGCACACACATTTAC  488

seq1  CAAAACACATTGAAGTAATCAGTTAAGATCCCCAAATTATCAAG  543
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACATTGAAGTAATCAGTTAAGATCCCCAAATTATCAAG  532

seq1: chr3_117551709_117552746
seq2: B6Ng01-145O17.g_70_1105

seq1  GAATTCAGAGCTCCCAAGCCAACATTCCATCGGTATATACAAAAATTTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCTCCCAAGCCAACATTCCATCGGTATATACAAAAATTTCG  50

seq1  CTCACAAACCATCCCATGGAAACAGCAATTTCCTAAACTGGGGAGGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAACCATCCCATGGAAACAGCAATTTCCTAAACTGGGGAGGTTTA  100

seq1  ATTGGTTAGGCCAGTGTCCTGGAGATTTCCCTGACACTGCATGTAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTAGGCCAGTGTCCTGGAGATTTCCCTGACACTGCATGTAATTCT  150

seq1  GAGCTCCAGCTTTCCTTGTGCCCAACGGCTCTGCTCACCACAGCCCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCAGCTTTCCTTGTGCCCAACGGCTCTGCTCACCACAGCCCACTT  200

seq1  CTTCTACCTACTAAGTAATTTTGTGTTCTATTTTCTCCACTGCAAAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACCTACTAAGTAATTTTGTGTTCTATTTTCTCCACTGCAAAAGCA  250

seq1  GCCTTTTGTAGCGTGGGAAGGATCTGGGCTGGCTTATGAAGGCTCACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTGTAGCGTGGGAAGGATCTGGGCTGGCTTATGAAGGCTCACAAT  300

seq1  TCTGAGGCATGCAGCGCAGTGTCATAAAAATATGCTCCCATATCCAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGCATGCAGCGCAGTGTCATAAAAATATGCTCCCATATCCAGCAA  350

seq1  AGGGAGAAAATTACAGGCTGAATATTTAGCAGCATGGATGATTTCTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAAATTACAGGCTGAATATTTAGCAGCATGGATGATTTCTGTAG  400

seq1  ACGGATTTAAATTACCGTGAATCACTCAAAAAACACTCTTAAAACCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATTTAAATTACCGTGAATCACTCAAAAAACACTCTTAAAACCTCAA  450

seq1  TAAAACCAACTATCCAACGTGGTTTAGATTTGTTCTCTCCCACAAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCAACTATCCAACGTGGTTTAGATTTGTTCTCTCCCACAAAGAGA  500

seq1  AAAGAAAATATGGTGACATTACTTAAAAATGTACCTTGATATAAATAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATATGGTGACATTACTTAAAAATGTACCTTGATATAAATAACT  550

seq1  GAAAGGAATGAGATACAGAGAAGCAATTAAGCCATTTAACCTTTTGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAATGAGATACAGAGAAGCAATTAAGCCATTTAACCTTTTGTGGT  600

seq1  TGGTGGGTTTGAAAAATGAATCCTTAACATATGTTTTCTTCTAACAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGTTTGAAAAATGAATCCTTAACATATGTTTTCTTCTAACAAAGG  650

seq1  ATTCATCTCCACCTTCTCTTTCCCCTTCCCTCTTCCTCTTCCTTGTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTCCACCTTCTCTTTCCCCTTCCCTCTTCCTCTTCCTTGTCTCC  700

seq1  CAATGTGGAAACCTATAGTTATTCAAGACTACCTTAATCCCTTAAGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGGAAACCTATAGTTATTCAAGACTACCTTAATCCCTTAAGCATT  750

seq1  GAAAAAACATCTTTTTGATCCCCCCCCCCACACACACACACATGATAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACATCTTTTTGATCCCCCCCCCCACACACACACACATGATAGCA  800

seq1  GAGGGGAAATGATCTGTGTGACAAGTCTGTACTTGAATTATATTTAATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAAATGATCTGTGTGACAAGTCTGTACTTGAATTATATTTAATAC  850

seq1  TCTTTTCACTGCCAATTCAATGAAAACACATACCCAAGACCAAGAAAACC  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTTTTCACTGCCAATTCAATGAAAACACATACCCAAGACCAAG-AAACC  899

seq1  AAGATCTGAATATACAATAAAGAAGAAAGCCAAATACATTGCAGAAATTC  950
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  AAGATCTGAATATAC-ATAAAGAAGAAAGCC-AATACATTGCAGAAATTC  947

seq1  ATTGTGTTCT-ATATTTACTCCAAAGCAACAGTCCACTGTTAAAGAAAAC  999
      |||||| ||| |||||||||||||||||||||| |||||||||  |||||
seq2  ATTGTGGTCTAATATTTACTCCAAAGCAACAGT-CACTGTTAAGAAAAAC  996

seq1  ATTCAAGCGACTTC-TGAAATCAATGTCACAAATGGCAAA  1038
      ||||| |||||||| |||||||||||||||||||||||||
seq2  ATTCAGGCGACTTCTTGAAATCAATGTCACAAATGGCAAA  1036