BAC Information

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BAC

Clone NameB6Ng01-145O23
Chromosome3 (Build37)
Map Location 83,179,845 - 83,326,037
singlet/doubletdoublet
Overlap genenone
Upstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
Downstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145O23.bB6Ng01-145O23.g
ACCDH943208DH943209
length1,134774
definitionDH943208|Mus musculus domesticus DNA, BAC clone: B6Ng01-145O23, 5' end.DH943209|Mus musculus domesticus DNA, BAC clone: B6Ng01-145O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,179,845 - 83,180,959)(83,325,266 - 83,326,037)
sequence
gaattcagagactcaggaataaacaataaacaaattgattactgacagcg
cgtatcttgatgcctggtgaaagcagtgtctttgctcacaataagtgcct
gtggctcttcacaccattttcttcatttttgcttttttgctgtttgtcaa
ggtagaaagtagacactaaacacaggagctaccaggcaggccttggctgc
tgtccttctgctactagatccactgtcaataacaatcaggttccactcaa
tgaggttttggttaatcatggactccatacattgacaattttgtaagatg
gtaatgtagctgggaaggacctgtaatgtaacagtgatgtagttactagg
gctatagcagctcactactcgcatgcttgtggaagggctggtgtgaacaa
actgccacattttcattcacccaaggtcatatggaagctcattaactatt
tttagtacatgcttgataattgtagtagaggacaacattatagacttatg
tgttatttatactacctttctaagcatcactttagaatgtattcatgtgt
gtgtacatgcatgcacattggtctttgaaatgataggaaataaaacctca
ggaactggtacattctgaagaacttatcaaatcctttcatatcgatcatg
catatgtccatgactccttttaaaagccagtaaatgccttgaaagttttt
attacattttatgtctgctacaccagcagcagccacatggggagactgac
tgagactaagtttgttgaagcgtatcctataatgttccccaaatgacagg
atcagctagtggtacatttcctcagaacacgtctccaacatgaagtgaca
catgacagcatttcctttgcctgcttcccaggactaaagtcaaagatggg
actcccatggtggtttctgaatctcccgcagggcccaaatcctatgtgga
aaccagccgggaaggttcctgggcagagaaagaacccacaaattcacagc
aagggatttgcattcaaggtagaagattactcagaatagtccttaagttc
attggtgtgaaccaaagtagagttcaagtcacacgaattttcatttcctg
ctgggtctcttgaaggaggaaaagggaaaaagaa
gaattctctctggaccttttttcttatttatttatttatttatttattta
tttatttatttatttatttattttctctgtatagccctggctgtcctgga
acttactccatagaccaggctggcctcaaactctgaaatccacctgcctc
tgcctcccaagtgcaaggattaaaggtgtgcgccaccactgcactgccta
gctttctgggccttaataaatacaattagaagatagttggccagctatta
ctagtttttatttttcctaggatattaaatatttatgacttgatcctgtt
tttcacaaagacagatctacacagtcattccttgaaagttaccttccaaa
gtgtccatctaggcttgctggtacaggcttgcaatcatgctactcaacag
tcttattaatgcagtaaagctgtaagttcaaggcctatctgagctacaga
ctgagttccagaccaacctgggcagctcagtgagtacctgtctcaaaagc
aaagtcaagaaacaagtggtaaagcatttccttagcatgtgtgatggctg
aagttcaattccctgcattaaaggaaaaaagttcaaaaccctcatttaca
aaggataattaatttggaaaagtaaggtggtggaaatttgttcattatcc
tgcttataaaaagaaaattgtttctgatgtcttggtctatctggccaaga
catgcatacacatttgtgtacacatgcatgcacatgcgcacaaacacaca
cacacacactcacatacactcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83179845_83180959
seq2: B6Ng01-145O23.b_47_1180

seq1  GAATTCAGAGACTCAGGAATAAACAATAAACAAATTGATTACTGACAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGACTCAGGAATAAACAATAAACAAATTGATTACTGACAGCG  50

seq1  CGTATCTTGATGCCTGGTGAAAGCAGTGTCTTTGCTCACAATAAGTGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCTTGATGCCTGGTGAAAGCAGTGTCTTTGCTCACAATAAGTGCCT  100

seq1  GTGGCTCTTCACACCATTTTCTTCATTTTTGCTTTTTTGCTGTTTGTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCTTCACACCATTTTCTTCATTTTTGCTTTTTTGCTGTTTGTCAA  150

seq1  GGTAGAAAGTAGACACTAAACACAGGAGCTACCAGGCAGGCCTTGGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAAGTAGACACTAAACACAGGAGCTACCAGGCAGGCCTTGGCTGC  200

seq1  TGTCCTTCTGCTACTAGATCCACTGTCAATAACAATCAGGTTCCACTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCTGCTACTAGATCCACTGTCAATAACAATCAGGTTCCACTCAA  250

seq1  TGAGGTTTTGGTTAATCATGGACTCCATACATTGACAATTTTGTAAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTTTGGTTAATCATGGACTCCATACATTGACAATTTTGTAAGATG  300

seq1  GTAATGTAGCTGGGAAGGACCTGTAATGTAACAGTGATGTAGTTACTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTAGCTGGGAAGGACCTGTAATGTAACAGTGATGTAGTTACTAGG  350

seq1  GCTATAGCAGCTCACTACTCGCATGCTTGTGGAAGGGCTGGTGTGAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGCAGCTCACTACTCGCATGCTTGTGGAAGGGCTGGTGTGAACAA  400

seq1  ACTGCCACATTTTCATTCACCCAAGGTCATATGGAAGCTCATTAACTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCACATTTTCATTCACCCAAGGTCATATGGAAGCTCATTAACTATT  450

seq1  TTTAGTACATGCTTGATAATTGTAGTAGAGGACAACATTATAGACTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTACATGCTTGATAATTGTAGTAGAGGACAACATTATAGACTTATG  500

seq1  TGTTATTTATACTACCTTTCTAAGCATCACTTTAGAATGTATTCATGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTATACTACCTTTCTAAGCATCACTTTAGAATGTATTCATGTGT  550

seq1  GTGTACATGCATGCACATTGGTCTTTGAAATGATAGGAAATAAAACCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACATGCATGCACATTGGTCTTTGAAATGATAGGAAATAAAACCTCA  600

seq1  GGAACTGGTACATTCTGAAGAACTTATCAAATCC-TTCATATCGATCATG  649
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGAACTGGTACATTCTGAAGAACTTATCAAATCCTTTCATATCGATCATG  650

seq1  CATATGTCCATGACTCCTTTTAAAAGCCAGTAAATGCCTTGAAAGTTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTCCATGACTCCTTTTAAAAGCCAGTAAATGCCTTGAAAGTTTTT  700

seq1  ATTACATTTTATGTCTGCTACACCAGCAGCAGCCACATGGGGAGACTGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTTTATGTCTGCTACACCAGCAGCAGCCACATGGGGAGACTGAC  750

seq1  TGAGACTAAGTTTGTTGAAGCGTATCCTATAATGTTCCCCAAATGACAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTAAGTTTGTTGAAGCGTATCCTATAATGTTCCCCAAATGACAGG  800

seq1  ATCAGCTAGTGGTACATTT-CTCAGAACACGTCTCCAACATGAAGTGACA  848
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATCAGCTAGTGGTACATTTCCTCAGAACACGTCTCCAACATGAAGTGACA  850

seq1  CATGACAGCATTTCCTTTGCCTGCTTCCCAGGACT-AAGTCAAAGAT-GG  896
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  CATGACAGCATTTCCTTTGCCTGCTTCCCAGGACTAAAGTCAAAGATGGG  900

seq1  ACTCCCAT-GTGG-TTCTGAATCTCCCGCAGGG-CCAAATCTCATGTGGA  943
      |||||||| |||| ||||||||||||||||||| |||||||  |||||||
seq2  ACTCCCATGGTGGTTTCTGAATCTCCCGCAGGGCCCAAATCCTATGTGGA  950

seq1  AACCAGCCGGGA--GGTCCTGGGCAGAGAAAGAAACCACAAATCAACAGC  991
      ||||||||||||  | |||||||||||||||||| ||||||||  |||||
seq2  AACCAGCCGGGAAGGTTCCTGGGCAGAGAAAGAACCCACAAATTCACAGC  1000

seq1  AGGGGATTTGCATTCAAGGAAGAAGATT-CTCAGAATAGTTCCT-AGTTC  1039
      | ||||||||||||||||| |||||||| ||||||||||| | | |||||
seq2  AAGGGATTTGCATTCAAGGTAGAAGATTACTCAGAATAGTCCTTAAGTTC  1050

seq1  CATGGTG-GAACC-AAGTA-AGTCAAAGTCACACGA--TTTCA-TTCCTG  1083
        ||||| ||||| ||||| |||  |||||||||||  ||||| ||||||
seq2  ATTGGTGTGAACCAAAGTAGAGTTCAAGTCACACGAATTTTCATTTCCTG  1100

seq1  CT-GGTCTC-TGAAGGAAGGAGAAGGAAAAAGGA  1115
      || |||||| ||||||| | | | |||||||| |
seq2  CTGGGTCTCTTGAAGGAGGAAAAGGGAAAAAGAA  1134

seq1: chr3_83325266_83326037
seq2: B6Ng01-145O23.g_69_842 (reverse)

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGCGCATGTGCATGCA  50
      |||| |||| |||| |||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGTATGTGAGTGTGTGTGTGTGTGTTTGTGCGCATGTGCATGCA  50

seq1  TGTGTACACAAATGTGTATGCATGTCTTGGCCAGATAGACCAAGACATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACACAAATGTGTATGCATGTCTTGGCCAGATAGACCAAGACATCA  100

seq1  GAAACAATTTTC-TTTTATAAGCAGGATAATGAAC-AATTTCCACCACCT  148
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  GAAACAATTTTCTTTTTATAAGCAGGATAATGAACAAATTTCCACCACCT  150

seq1  TACTTTTCCAAATTAATTATCCTTTGTAAATGAGGGTTTTGAACTTTTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCCAAATTAATTATCCTTTGTAAATGAGGGTTTTGAACTTTTTT  200

seq1  CCTTTAATGCAGGGAATTGAACTTCAGCCATCACACATGCTAAGGAAATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATGCAGGGAATTGAACTTCAGCCATCACACATGCTAAGGAAATG  250

seq1  CTTTACCACTTGTTTCTTGACTTTGCTTTTGAGACAGGTACTCACTGAGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCACTTGTTTCTTGACTTTGCTTTTGAGACAGGTACTCACTGAGC  300

seq1  TGCCCAGGTTGGTCTGGAACTCAGTCTGTAGCTCAGATAGGCCTTGAACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGGTTGGTCTGGAACTCAGTCTGTAGCTCAGATAGGCCTTGAACT  350

seq1  TACAGCTTTACTGCATTAATAAGACTGTTGAGTAGCATGATTGCAAGCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTTACTGCATTAATAAGACTGTTGAGTAGCATGATTGCAAGCCT  400

seq1  GTACCAGCAAGCCTAGATGGACACTTTGGAAGGTAACTTTCAAGGAATGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGCAAGCCTAGATGGACACTTTGGAAGGTAACTTTCAAGGAATGA  450

seq1  CTGTGTAGATCTGTCTTTGTGAAAAACAGGATCAAGTCATAAATATTTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGATCTGTCTTTGTGAAAAACAGGATCAAGTCATAAATATTTAA  500

seq1  TATCCTAGGAAAAATAAAAACTAGTAATAGCTGGCCAACTATCTTCTAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAGGAAAAATAAAAACTAGTAATAGCTGGCCAACTATCTTCTAAT  550

seq1  TGTATTTATTAAGGCCCAGAAAGCTAGGCAGTGCAGTGGTGGCGCACACC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTATTAAGGCCCAGAAAGCTAGGCAGTGCAGTGGTGGCGCACACC  600

seq1  TTTAATCCTTGCACTTGGGAGGCAGAGGCAGGTGGATTTCAGAGTTTGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCTTGCACTTGGGAGGCAGAGGCAGGTGGATTTCAGAGTTTGAG  650

seq1  GCCAGCCTGGTCTATGGAGTAAGTTCCAGGACAGCCAGGGCTATACAGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTCTATGGAGTAAGTTCCAGGACAGCCAGGGCTATACAGAG  700

seq1  AAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATA  750

seq1  AGAAAAAAGGTCCAGAGAGAATTC  772
      ||||||||||||||||||||||||
seq2  AGAAAAAAGGTCCAGAGAGAATTC  774