BAC Information

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BAC

Clone NameB6Ng01-146B03
Chromosome3 (Build37)
Map Location 18,378,290 - 18,561,564
singlet/doubletdoublet
Overlap geneLOC622921, LOC100040153
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146B03.bB6Ng01-146B03.g
ACCDH943308DH943309
length9181,042
definitionDH943308|Mus musculus domesticus DNA, BAC clone: B6Ng01-146B03, 5' end.DH943309|Mus musculus domesticus DNA, BAC clone: B6Ng01-146B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,378,290 - 18,379,204)(18,560,495 - 18,561,564)
sequence
gaattcatcctgaagaacctaagaagcaaggagcaactcttcccatcctg
tgacacactactgtggttggtgacatctcaataaattctgtcatttacaa
ttaacccatgggacctggggacagttcttttcatattccatgctaccaag
actgcagtatctgctggtacaatctacacggacattaaatctcagtcccc
agaagctgaatacatgcaagtttggaagcttacatgtgcccaaaccagga
cagggtaaagggggaggggtcagagaccccataacgatgcccagggtttc
agagtctggagacaagcaccagggtaaacatctaacttttattattcagt
acaataacatatacaacttttcagtcagtaagggtgcagtaacatgatca
tagccatgtaggaatataggaaacattcaaaggaacatggttcctccaga
agatcaaaataactctccatacatgatcctaagttataggaaatatacca
cgtgtttcaaaatagtgatcctgagaaaatcagtgaagtgcaaggtcaga
catgtagaccatgaacaacaaaagtgataaaatagatccgtgtataaatg
agaaatccaccaaataaaaagaagttacgtttctgaaaagttaaccaata
agaaatattgagactaaaaacatcagttaactaaataaactttagaccat
gaaggaaatcttaaaaatacaaaagaaccaatataatttgttgtgtttta
ccagaccagagtagaatgaaaccagaaaattatataatcaatgagaataa
tattgaaaaatatacagagattacagaaatttcatagttacttttacgtt
cttcagtaacaaatgaacaattaaaaaacaggaaggggatgggggaggag
gattaaaatctcctaaaa
gaattcctaggtgagctatgctgtgtataattttatattttccaaattta
tgagcaaataaatgtctttttcatcacgtagttaatttattacatatgta
cttacacatattatttacatgtcttaaaataataatattctttttcttat
aacataagacagtaaataaaagacagtacaactgaagtgactggaatggc
catgtgtatgcataacagtcacagttttctaactgatcttttataatcta
catagtcaaaattatagaattgatatacaatagatgttataaatataaca
tctatataaatagcagagggccttgtaagaatttcattgatgatgtttat
atatgggaagaacaaaaattcaccctgcatttaactattaggtcccaggg
gccgtggtttaatctttctgttttagagaataaagcaaatggaagaattg
gtttttttagaatccctacctcatctacaatgacatttgttacaaatgca
atccatacttgagcctcaccctaatataacttatatactttcaaatgaag
tcatgagagtgaaaatattaacacctattgtcagcatacaaaaggcactc
agtcaaagtttggagctgagacagaaggaaggattatcaagagactgccc
cacccggggatccatcccatatacagccaccaaacccaggcactattgca
tatgccagcaagattttgctgacaggaccctgatatagctgtctcttgtg
aggctatgccagtgcctggcaaatacagaagtggatgctcacagtcatgt
ataagatggaacacagggcccccaatggaggagctagagaaagtacccaa
ggagctgaagggtctgcattctataggaggaacacatatgaactaaccag
tacttctagagctcgtgtctctatctgcatatatagcagaagatggccta
gttggccatcatggagagagttcttgtcttgcgaagattatatgcccagt
acaggatgccagggccaggaacagagtgggtgggttgggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18378290_18379204
seq2: B6Ng01-146B03.b_47_964

seq1  GAATTCATCCTGAAGAACCTAAGAAGCAAGGAGCAACTCTTCCCATCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTGAAGAACCTAAGAAGCAAGGAGCAACTCTTCCCATCCTG  50

seq1  TGACACACTACTGTGGTTGGTGACATCTCAATAAATTCTGTCATTTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACTACTGTGGTTGGTGACATCTCAATAAATTCTGTCATTTACAA  100

seq1  TTAACCCATGGGACCTGGGGACAGTTCTTTTCATATTCCATGCTACCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCATGGGACCTGGGGACAGTTCTTTTCATATTCCATGCTACCAAG  150

seq1  ACTGCAGTATCTGCTGGTACAATCTACACGGACATTAAATCTCAGTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGTATCTGCTGGTACAATCTACACGGACATTAAATCTCAGTCCCC  200

seq1  AGAAGCTGAATACATGCAAGTTTGGAAGCTTACATGTGCCCAAACCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGAATACATGCAAGTTTGGAAGCTTACATGTGCCCAAACCAGGA  250

seq1  CAGGGTAAAGGGGGAGGGGTCAGAGACCCCATAACGATGCCCAGGGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAAAGGGGGAGGGGTCAGAGACCCCATAACGATGCCCAGGGTTTC  300

seq1  AGAGTCTGGAGACAAGCACCAGGGTAAACATCTAACTTTTATTATTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGGAGACAAGCACCAGGGTAAACATCTAACTTTTATTATTCAGT  350

seq1  ACAATAACATATACAACTTTTCAGTCAGTAAGGGTGCAGTAACATGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAACATATACAACTTTTCAGTCAGTAAGGGTGCAGTAACATGATCA  400

seq1  TAGCCATGTAGGAATATAGGAAACATTCAAAGGAACATGGTTCCTCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATGTAGGAATATAGGAAACATTCAAAGGAACATGGTTCCTCCAGA  450

seq1  AGATCAAAATAACTCTCCATACATGATCCTAAGTTATAGGAAATATACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAAATAACTCTCCATACATGATCCTAAGTTATAGGAAATATACCA  500

seq1  CGTGTTTCAAAATAGTGATCCTGAGAAAATCAGTGAAGTGCAAGGTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTTCAAAATAGTGATCCTGAGAAAATCAGTGAAGTGCAAGGTCAGA  550

seq1  CATGTAGACCATGAACAACAAAAGTGATAAAATAGATCCGTGTATAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGACCATGAACAACAAAAGTGATAAAATAGATCCGTGTATAAATG  600

seq1  AGAAATCCACCAAATAAAAAGAAGTTACGTTTCTGAAAAGTTAACCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCACCAAATAAAAAGAAGTTACGTTTCTGAAAAGTTAACCAATA  650

seq1  AGAAATATTGAGACTAAAAACATCAGTTAACTAAATAAACTTTAGACCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTGAGACTAAAAACATCAGTTAACTAAATAAACTTTAGACCAT  700

seq1  GAAGGAAATCTTAAAAATACAAAAGAACCAATATAATTTGTTGTGTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAATCTTAAAAATACAAAAGAACCAATATAATTTGTTGTGTTTTA  750

seq1  CCAGACCAGAGTAGAATGAAACCAGAAAATTATATAATCAATGAGAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCAGAGTAGAATGAAACCAGAAAATTATATAATCAATGAGAATAA  800

seq1  TATTGAAAAATATACAGAGATTACAGAAATTTCATAGTTACTTTTACGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAAAATATACAGAGATTACAGAAATTTCATAGTTACTTTTACGTT  850

seq1  CTTCAGTAACAAATGAACAATTAAAAAACA-GAAGGGGAT-GGGGAGGAG  898
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  CTTCAGTAACAAATGAACAATTAAAAAACAGGAAGGGGATGGGGGAGGAG  900

seq1  ATTTAAAATCT-CTAAAA  915
        ||||||||| ||||||
seq2  GATTAAAATCTCCTAAAA  918

seq1: chr3_18560495_18561564
seq2: B6Ng01-146B03.g_66_1107 (reverse)

seq1  TCTCCCAACCCTGCTC-CCCAACCCACCCACTCCTGTTTCCTGGCCCTGG  49
                    || ||||||||||||||| ||| |||||||||||||
seq2  --------------TCTCCCAACCCACCCACT-CTG-TTCCTGGCCCTGG  34

seq1  CATTCCCCTGTACTGGGGCATATAATCTTCGCAAGACCAAGAAACTCTCC  99
      |||   |||||||| ||||||||||||||||||||| |||| |||||| |
seq2  CAT---CCTGTACT-GGGCATATAATCTTCGCAAGA-CAAG-AACTCT-C  77

seq1  TCCCAATGATGGCCAACTAGGCCATCTTCTGCTATATATGCAGATAGAGA  149
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCC--ATGATGGCCAACTAGGCCATCTTCTGCTATATATGCAGATAGAGA  125

seq1  CACGAGCTCTAGAAGTACTGGTTAGTTCATATTGTTGTTCCTCCTATAGA  199
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  CACGAGCTCTAGAAGTACTGGTTAGTTCATAT--GTGTTCCTCCTATAGA  173

seq1  ATTGCAGACCCCTTCAGCTCCTTGGGTACCTTCTCTAGCTCCTCCATTGG  249
      | |||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  A-TGCAGA-CCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGG  221

seq1  GGGCCCTGTGTTCCATCTTATACATGACTGTGAGCATCCACTTCTGTATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGTGTTCCATCTTATACATGACTGTGAGCATCCACTTCTGTATT  271

seq1  TGCCAGGCACTGGCATAGCCTCACAAGAGACAGCTATATCAGGGTCCTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCACTGGCATAGCCTCACAAGAGACAGCTATATCAGGGTCCTGT  321

seq1  CAGCAAAATCTTGCTGGCATATGCAATAGTGCCTGGGTTTGGTGGCTGTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAATCTTGCTGGCATATGCAATAGTGCCTGGGTTTGGTGGCTGTA  371

seq1  TATGGGATGGATCCCCGGGTGGGGCAGTCTCTTGATAATCCTTCCTTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGATGGATCCCCGGGTGGGGCAGTCTCTTGATAATCCTTCCTTCTG  421

seq1  TCTCAGCTCCAAACTTTGACTGAGTGCCTTTTGTATGCTGACAATAGGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTCCAAACTTTGACTGAGTGCCTTTTGTATGCTGACAATAGGTG  471

seq1  TTAATATTTTCACTCTCATGACTTCATTTGAAAGTATATAAGTTATATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTTTCACTCTCATGACTTCATTTGAAAGTATATAAGTTATATTA  521

seq1  GGGTGAGGCTCAAGTATGGATTGCATTTGTAACAAATGTCATTGTAGATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGGCTCAAGTATGGATTGCATTTGTAACAAATGTCATTGTAGATG  571

seq1  AGGTAGGGATTCTAAAAAAACCAATTCTTCCATTTGCTTTATTCTCTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGGATTCTAAAAAAACCAATTCTTCCATTTGCTTTATTCTCTAAA  621

seq1  ACAGAAAGATTAAACCACGGCCCCTGGGACCTAATAGTTAAATGCAGGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGATTAAACCACGGCCCCTGGGACCTAATAGTTAAATGCAGGGT  671

seq1  GAATTTTTGTTCTTCCCATATATAAACATCATCAATGAAATTCTTACAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTGTTCTTCCCATATATAAACATCATCAATGAAATTCTTACAAG  721

seq1  GCCCTCTGCTATTTATATAGATGTTATATTTATAACATCTATTGTATATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGCTATTTATATAGATGTTATATTTATAACATCTATTGTATATC  771

seq1  AATTCTATAATTTTGACTATGTAGATTATAAAAGATCAGTTAGAAAACTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATAATTTTGACTATGTAGATTATAAAAGATCAGTTAGAAAACTG  821

seq1  TGACTGTTATGCATACACATGGCCATTCCAGTCACTTCAGTTGTACTGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTATGCATACACATGGCCATTCCAGTCACTTCAGTTGTACTGTC  871

seq1  TTTTATTTACTGTCTTATGTTATAAGAAAAAGAATATTATTATTTTAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTACTGTCTTATGTTATAAGAAAAAGAATATTATTATTTTAAGA  921

seq1  CATGTAAATAATATGTGTAAGTACATATGTAATAAATTAACTACGTGATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAATAATATGTGTAAGTACATATGTAATAAATTAACTACGTGATG  971

seq1  AAAAAGACATTTATTTGCTCATAAATTTGGAAAATATAAAATTATACACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACATTTATTTGCTCATAAATTTGGAAAATATAAAATTATACACA  1021

seq1  GCATAGCTCACCTAGGAATTC  1070
      |||||||||||||||||||||
seq2  GCATAGCTCACCTAGGAATTC  1042