BAC Information

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BAC

Clone NameB6Ng01-146C13
Chromosome3 (Build37)
Map Location 101,847,843 - 101,964,182
singlet/doubletdoublet
Overlap geneLOC100043047, Casq2, Vangl1
Upstream genePtgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2
Downstream geneEG433633, Ngfb, Tspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146C13.bB6Ng01-146C13.g
ACCDH943376DH943377
length3721,088
definitionDH943376|Mus musculus domesticus DNA, BAC clone: B6Ng01-146C13, 5' end.DH943377|Mus musculus domesticus DNA, BAC clone: B6Ng01-146C13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,847,843 - 101,848,214)(101,963,082 - 101,964,182)
sequence
gaattcattgcaggctgccaaggttccttcaaaatttgacaggccacatt
gatcaggatcctgaataggatcaagcctgacattccaagggacaaacata
gaagagggaagcatgccttctgctatcatctccttaggaagaagtcattt
ccaggtcatgtgctgaagtgaaaatctcaaagaaacttgaatcctgagtt
cagattcaagttctgttctattattctggaggccgttaaaacaatttcca
ggttgtaagaaactctgtgcctaagaaatgaggaaggaatacaaacataa
acataaataaaaattattcttggaaatgtcctagaatggatatatagatt
taaagaaggaggaggggggagg
gaattctggtccagcctgtgctacctatcagaaactttctcagaaacaaa
acaaaaacaaacaaaaaaacaaccaatcaaacaagaacaaaaccaaaacc
gaaactggagctggtgagacggctctttggataaaggtgcttgctgccaa
gcctgagttcaggccccagaactacatgctggaaggagagaactgactcg
ggaaactgttttccagcacacacatgccatggcatgcataggcgtgcaca
cacacaaactcagagagagagacagagacagagagaacacaaagtaatta
gaacccccacactatcaacaaaaccgcactctgcccccaccccccactcc
ttccagttcgggctgacgtgtgttctcttagctgagtctgagtctagctt
ttaaggcagagatgctttaatactagacacgcctgcgttttggaagcctg
ctttcttcactcaaggtttcttggatcattcattccatacactcagatct
gactcacgcagctttcactgtgaatagctgctcccgattccaccagatat
gtagatttgcctaaccacttgtctgttggtgcacctttgaattaagtttc
actggtcaaagccaggggttggctgtttctgtgactccgatttcactgga
gcacagcagcgctttcttgtgtgcctatcaccatggctacagctgcttgc
actgcccggcagagtggaggagttatgaaagaggattgcttgaaacccaa
aaaggtcctcaccttggcctggaccagatggctacatgccagtatttttc
aatttatattgtcagttcattctttctcccaaccaaactgatgtatgtat
ttattccatgccaggcacttagaaagtcatactttaaaagtgggaagaca
gggtgacgtagtcttatcttctacaagtttgaagcctcgaggggaggaga
cagcaagtcagcaaagttcaggatgtgaactatgcatgacgtcatcgcaa
ggggttcaggagctttgcaaagaaccgttgatcatctgagtgatgtggaa
agagtgaggtctaggagggattctggacagcctctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_101847843_101848214
seq2: B6Ng01-146C13.b_46_417

seq1  GAATTCATTGCAGGCTGCCAAGGTTCCTTCAAAATTTGACAGGCCACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCAGGCTGCCAAGGTTCCTTCAAAATTTGACAGGCCACATT  50

seq1  GATCAGGATCCTGAATAGGATCAAGCCTGACATTCCAAGGGACAAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGATCCTGAATAGGATCAAGCCTGACATTCCAAGGGACAAACATA  100

seq1  GAAGAGGGAAGCATGCCTTCTGCTATCATCTCCTTAGGAAGAAGTCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGAAGCATGCCTTCTGCTATCATCTCCTTAGGAAGAAGTCATTT  150

seq1  CCAGGTCATGTGCTGAAGTGAAAATCTCAAAGAAACTTGAATCCTGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCATGTGCTGAAGTGAAAATCTCAAAGAAACTTGAATCCTGAGTT  200

seq1  CAGATTCAAGTTCTGTTCTATTATTCTGGAGGCCGTTAAAACAATTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCAAGTTCTGTTCTATTATTCTGGAGGCCGTTAAAACAATTTCCA  250

seq1  GGTTGTAAGAAACTCTGTGCCTAAGAAATGAGGAAGGAATACAAACATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTAAGAAACTCTGTGCCTAAGAAATGAGGAAGGAATACAAACATAA  300

seq1  ACATAAATAAAAATTATTCTTGGAAATGTCCTAGAATGGATATATAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATAAAAATTATTCTTGGAAATGTCCTAGAATGGATATATAGATT  350

seq1  TAAAGAAGGAGGAGGGGGGAGG  372
      ||||||||||||||||||||||
seq2  TAAAGAAGGAGGAGGGGGGAGG  372

seq1: chr3_101963082_101964182
seq2: B6Ng01-146C13.g_68_1154 (reverse)

seq1  TGAGA-GCTGTCCCAGAAATCCCTCCTAGACCTTCACATCTTACACTATC  49
      ||||| ||||| |||| ||||||||||||||| |||| |||| |   |||
seq2  TGAGAGGCTGT-CCAG-AATCCCTCCTAGACC-TCAC-TCTTTCCACATC  46

seq1  CCTCAGATGGATCAACGTGTTCTTTTGCCAAAGCTCCTGAAACCCCTGGC  99
       ||||||| |||||||| |||||||   ||||||||||| ||||||| ||
seq2  ACTCAGAT-GATCAACG-GTTCTTT--GCAAAGCTCCTG-AACCCCTTGC  91

seq1  GATGACGTCATGCCATAGTTCACTTCCTGAACTCTGCTGACTTGCTGTCT  149
      |||||||||||| |||||||||| ||||||||| ||||||||||||||||
seq2  GATGACGTCATG-CATAGTTCACATCCTGAACTTTGCTGACTTGCTGTCT  140

seq1  CCTCCCCTCGAGGCTTCAAACTTGTAGAAGATAAGAACTACGTCAACCCT  199
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  CCTCCCCTCGAGGCTTCAAACTTGTAGAAGATAAG-ACTACGTC-ACCCT  188

seq1  GTCTTCCACTTTTTAAAGTATGACTTTCTAATGTGCCTGGCATGGAATTA  249
      |||||||   ||||||||||||||||||||| ||||||||||||||| ||
seq2  GTCTTCCCACTTTTAAAGTATGACTTTCTAA-GTGCCTGGCATGGAA-TA  236

seq1  AATACATACATCAGTTTGGTTGGGAGAAAGAATGAACTGACAATATAAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATACATCAGTTTGGTTGGGAGAAAGAATGAACTGACAATATAAAT  286

seq1  TGAAAAATACTGGCATGTAGCCATCTGGTCCTAGGCCAAGGTGAGGACCT  349
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGAAAAATACTGGCATGTAGCCATCTGGTCC-AGGCCAAGGTGAGGACCT  335

seq1  TTTTGGGTTTCAAGCAATCCTCTTTCATAACTCCTCCACTCTGCCGGGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTTTCAAGCAATCCTCTTTCATAACTCCTCCACTCTGCCGGGCA  385

seq1  GTGCAAGCAGCTGTAGCCATGGTGATAGGCACACAAGAAAGCGCTGCTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGCAGCTGTAGCCATGGTGATAGGCACACAAGAAAGCGCTGCTGT  435

seq1  GCTCCAGTGAAATCGGAGTCACAGAAACAGCCAACCCCTGGCTTTGACCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTGAAATCGGAGTCACAGAAACAGCCAACCCCTGGCTTTGACCA  485

seq1  GTGAAACTTAATTCAAAGGTGCACCAACAGACAAGTGGTTAGGCAAATCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACTTAATTCAAAGGTGCACCAACAGACAAGTGGTTAGGCAAATCT  535

seq1  ACATATCTGGTGGAATCGGGAGCAGCTATTCACAGTGAAAGCTGCGTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCTGGTGGAATCGGGAGCAGCTATTCACAGTGAAAGCTGCGTGAG  585

seq1  TCAGATCTGAGTGTATGGAATGAATGATCCAAGAAACCTTGAGTGAAGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTGAGTGTATGGAATGAATGATCCAAGAAACCTTGAGTGAAGAA  635

seq1  AGCAGGCTTCCAAAACGCAGGCGTGTCTAGTATTAAAGCATCTCTGCCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCTTCCAAAACGCAGGCGTGTCTAGTATTAAAGCATCTCTGCCTT  685

seq1  AAAAGCTAGACTCAGACTCAGCTAAGAGAACACACGTCAGCCCGAACTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTAGACTCAGACTCAGCTAAGAGAACACACGTCAGCCCGAACTGG  735

seq1  AAGGAGTGGGGGGTGGGGGCAGAGTGCGGTTTTGTTGATAGTGTGGGGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGGGGGGTGGGGGCAGAGTGCGGTTTTGTTGATAGTGTGGGGGT  785

seq1  TCTAATTACTTTGTGTTCTCTCTGTCTCTGTCTCTCTCTCTGAGTTTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTACTTTGTGTTCTCTCTGTCTCTGTCTCTCTCTCTGAGTTTGTG  835

seq1  TGTGTGCACGCCTATGCATGCCATGGCATGTGTGTGCTGGAAAACAGTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCACGCCTATGCATGCCATGGCATGTGTGTGCTGGAAAACAGTTT  885

seq1  CCCGAGTCAGTTCTCTCCTTCCAGCATGTAGTTCTGGGGCCTGAACTCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGTCAGTTCTCTCCTTCCAGCATGTAGTTCTGGGGCCTGAACTCAG  935

seq1  GCTTGGCAGCAAGCACCTTTATCCAAAGAGCCGTCTCACCAGCTCCAGTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCAGCAAGCACCTTTATCCAAAGAGCCGTCTCACCAGCTCCAGTT  985

seq1  TCGGTTTTGGTTTTGTTCTTGTTTGATTGGTTGTTTTTTTGTTTGTTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTTTGGTTTTGTTCTTGTTTGATTGGTTGTTTTTTTGTTTGTTTTT  1035

seq1  GTTTTGTTTCTGAGAAAGTTTCTGATAGGTAGCACAGGCTGGACCAGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTCTGAGAAAGTTTCTGATAGGTAGCACAGGCTGGACCAGAAT  1085

seq1  TC  1101
      ||
seq2  TC  1087