BAC Information

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BAC

Clone NameB6Ng01-146D04
Chromosome3 (Build37)
Map Location 49,206,768 - 49,339,311
singlet/doubletdoublet
Overlap geneLOC676568, LOC666247, LOC100039579
Upstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519
Downstream geneLOC100039587, LOC638779, Pcdh18, LOC100039628, LOC639469, Slc7a11, EG621304
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146D04.bB6Ng01-146D04.g
ACCDH943406DH943407
length1,125826
definitionDH943406|Mus musculus domesticus DNA, BAC clone: B6Ng01-146D04, 5' end.DH943407|Mus musculus domesticus DNA, BAC clone: B6Ng01-146D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,206,768 - 49,207,911)(49,338,487 - 49,339,311)
sequence
gaattctttgtttagctctgagccccagtttttaatggggttatttgatt
ttctggagtccactctcttgagttctttatatatattggttattagtccc
ctatctgatttaggataggtaaagatccttccccaatctgttagtggcct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttca
tgagatcccatttgtcaattctctaccttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgtccatatcttcgaggcttttccccac
tttctcctctataactttcagtgtctctggttttatgtggagttccttga
tccagttagatttgaccttagtacaaggagataggaatggatcgattcac
attcttctacatgataaccaccagttatgccagctgttctggatttctta
caggggctaaataaagagtgccactctcatagatacatgtatgtaaatat
gtatatgtgtgtgtctgcatatatatatatatatatatgtatatatatac
atatattcacatataacttaattaaagtgttgtttaaatttttccccata
ctctaatcaagatatttccccaatttttctctgatatttacacgtttatg
aaataaaagaacaatatcatccttccatctgtttgatgactaaaacttct
cttacttgtaggaccatcctcttgaggaacagcagatgaaatatttaatt
tttcaatattatcatttgaggttttcccactctggccatctatggttttg
ttcctagcaggtgacttaccagcagtatttattgaagtctttatatcatc
tgacctcttctgattaccattacaagtggtgtggtcatcctcaccaaata
tatctagacaattgtcagtcatgatttgtatatagacatctgcatatcac
aaggcaaaaacaagatctctgtcatttcacacagttacaaaattgaagtc
aataaaaaattgaaatctaaatgttgaggaaaataccagtactgtgatct
gatagacttgtgaaacgagcttctgtctggaatggagacttaagttcttg
cattacttacagtaggttcatatat
gaattccatgatttagttgcattgcaattaaggtaaagattgtgtatata
ttggaaggttttcatgcatagaatatccttttgtgaaaaaagcatattaa
aatctttattttaaaaacagtgtttgcatctttacactgataaggacata
ggagtgaatatgtaggtgtgacaaagtatccctgaagatgtctgaaccct
gctgctggagaggcaagtgcaagtaagaatgatgctccttcatggttgct
gttgttgttgttgctgaatttcttagttgacctgatgaaactatgacagg
ctttagagtactctaaaaggaagtatttacatatacatatggagaaatta
ttatataattatacacatggagaaattatgatataattagttccttgact
ataaagcaacaaaacggaggaggagaataagctaagttttaaaagtgctg
ttcacttcagtggcaccaaggaaagaggcgaagataaaacacagacttca
gaaacaaatatgttgacagccataaaacaaacccagaaacacaaaaacat
tagttttggtagcagagaaaaaggattattcaagacggcccccagtggag
gagctagagaaattacccaaggagctaaagggaactgcaaccctataggt
ggaacaacaatatgaactaaccagtaccccggagctcttgactctagctg
catatgtatcaaaagatggcctagttggccatcactgcaaagagaggccc
attggacttgcaaactttatatgccccagtacaggggaacaccagggcca
aaaagggggagtgggtggggtagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49206768_49207911
seq2: B6Ng01-146D04.b_48_1172

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCAGTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCAGTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGGAGTCCACTCTCTTGAGTTCTTTATATATATTGGTTATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCACTCTCTTGAGTTCTTTATATATATTGGTTATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTCCCCAATCTGTTAGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTCCCCAATCTGTTAGTGGCCT  150

seq1  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCA  200

seq1  TGAGATCCCATTTGTCAATTCTCTACCTTACAGCACAAGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCCCATTTGTCAATTCTCTACCTTACAGCACAAGCCATTGCTGTT  250

seq1  CTATTCAGGAATTTTTCCCCTGTGTCCATATCTTCGAGGCTTTTCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGGAATTTTTCCCCTGTGTCCATATCTTCGAGGCTTTTCCCCAC  300

seq1  TTTCTCCTCTATAACTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATAACTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGA  350

seq1  TCCAGTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTCAC  400

seq1  ATTCTTCTACATGATAACCACCAGTTATGCCAGCTGTTCTGGATTTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTACATGATAACCACCAGTTATGCCAGCTGTTCTGGATTTCTTA  450

seq1  CAGGGGCTAAATAAAGAGTGCCACTCTCATAGATACATGTATGTAAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCTAAATAAAGAGTGCCACTCTCATAGATACATGTATGTAAATAT  500

seq1  GTATATGTGTGTGTCTGCATATATATATATATATATATGTATATATATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGTGTGTGTCTGCATATATATATATATATATATGTATATATATAC  550

seq1  ATATATTCACATATAACTTAATTAAAGTGTTGTTTAAATTTTTCCCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTCACATATAACTTAATTAAAGTGTTGTTTAAATTTTTCCCCATA  600

seq1  CTCTAATCAAGATATTTCCCCAATTTTTCTCTGATATTTACACGTTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATCAAGATATTTCCCCAATTTTTCTCTGATATTTACACGTTTATG  650

seq1  AAATAAAAGAACAATATCATCCTTCCATCTGTTTGATGACTAAAACTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGAACAATATCATCCTTCCATCTGTTTGATGACTAAAACTTCT  700

seq1  CTTACTTGTAGGACCATCCTCTTGAGGAACAGCAGATGAAATATTTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTGTAGGACCATCCTCTTGAGGAACAGCAGATGAAATATTTAATT  750

seq1  TTTCAATATTATCATTTGAGGTTTTCCCACTCTGGCCATCTATGGTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATATTATCATTTGAGGTTTTCCCACTCTGGCCATCTATGGTTTTG  800

seq1  TTCCTAGCAGGTGACTTACCAGCAGTATTTATTGAAGTCTTTATATCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGCAGGTGACTTACCAGCAGTATTTATTGAAGTCTTTATATCATC  850

seq1  TGACCTCTTCTGATTACCATTACAAGTGGTGTGGTCATCCTCACCAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCTTCTGATTACCATTACAAGTGGTGTGGTCATCCTCACCAAATA  900

seq1  TATCTAGACAATTGTCAGTCATGATTTGTATAATAGACATCTGCAATATC  950
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  TATCTAGACAATTGTCAGTCATGATTTGTAT-ATAGACATCTGC-ATATC  948

seq1  ACAAGGCAAAAACAAGATCCTCTGTCATTTCACACAGTTTACAAAATTGA  1000
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  ACAAGGCAAAAACAAGAT-CTCTGTCATTTCACACAG-TTACAAAATTGA  996

seq1  AGTCAATAAAAAATTGAAATCTAAAATGTTGAGGAAAATACCAGTTACTG  1050
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  AGTCAATAAAAAATTGAAATCT-AAATGTTGAGGAAAATACCAG-TACTG  1044

seq1  TGATCTGATAAGAACCTGTGAAACGAAGCCTCTGTCTGAAATGGAGACTC  1100
      ||||||||||   || ||||||||| ||| |||||||| |||||||||| 
seq2  TGATCTGATA--GACTTGTGAAACG-AGCTTCTGTCTGGAATGGAGACT-  1090

seq1  TAAGTTCTTTGCAAATTACTTAATCTAGTTAAAGTTTCATATAT  1144
      ||||||| ||||  ||||||||    |||   || |||||||||
seq2  TAAGTTC-TTGC--ATTACTTA---CAGT---AGGTTCATATAT  1125

seq1: chr3_49338487_49339311
seq2: B6Ng01-146D04.g_66_891 (reverse)

seq1  CCCCTA-CCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTG  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACCCCACCCACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTG  50

seq1  GGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCC  100

seq1  AACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGG  150

seq1  TACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTT  200

seq1  AGCTCCTTGGGTAATTTCTCTAGCTCCTCCACTGGGGGCCGTCTTGAATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTTGGGTAATTTCTCTAGCTCCTCCACTGGGGGCCGTCTTGAATA  250

seq1  ATCCTTTTTCTCTGCTACCAAAACTAATGTTTTTGTGTTTCTGGGTTTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTTCTCTGCTACCAAAACTAATGTTTTTGTGTTTCTGGGTTTGT  300

seq1  TTTATGGCTGTCAACATATTTGTTTCTGAAGTCTGTGTTTTATCTTCGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGCTGTCAACATATTTGTTTCTGAAGTCTGTGTTTTATCTTCGCC  350

seq1  TCTTTCCTTGGTGCCACTGAAGTGAACAGCACTTTTAAAACTTAGCTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTTGGTGCCACTGAAGTGAACAGCACTTTTAAAACTTAGCTTAT  400

seq1  TCTCCTCCTCCGTTTTGTTGCTTTATAGTCAAGGAACTAATTATATCATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCTCCGTTTTGTTGCTTTATAGTCAAGGAACTAATTATATCATA  450

seq1  ATTTCTCCATGTGTATAATTATATAATAATTTCTCCATATGTATATGTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCATGTGTATAATTATATAATAATTTCTCCATATGTATATGTAA  500

seq1  ATACTTCCTTTTAGAGTACTCTAAAGCCTGTCATAGTTTCATCAGGTCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCCTTTTAGAGTACTCTAAAGCCTGTCATAGTTTCATCAGGTCAA  550

seq1  CTAAGAAATTCAGCAACAACAACAACAGCAACCATGAAGGAGCATCATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAATTCAGCAACAACAACAACAGCAACCATGAAGGAGCATCATTC  600

seq1  TTACTTGCACTTGCCTCTCCAGCAGCAGGGTTCAGACATCTTCAGGGATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGCACTTGCCTCTCCAGCAGCAGGGTTCAGACATCTTCAGGGATA  650

seq1  CTTTGTCACACCTACATATTCACTCCTATGTCCTTATCAGTGTAAAGATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCACACCTACATATTCACTCCTATGTCCTTATCAGTGTAAAGATG  700

seq1  CAAACACTGTTTTTAAAATAAAGATTTTAATATGCTTTTTTCACAAAAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTGTTTTTAAAATAAAGATTTTAATATGCTTTTTTCACAAAAGG  750

seq1  ATATTCTATGCATGAAAACCTTCCAATATATACACAATCTTTACCTTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTATGCATGAAAACCTTCCAATATATACACAATCTTTACCTTAAT  800

seq1  TGCAATGCAACTAAATCATGGAATTC  825
      ||||||||||||||||||||||||||
seq2  TGCAATGCAACTAAATCATGGAATTC  826