BAC Information

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BAC

Clone NameB6Ng01-146D15
Chromosome3 (Build37)
Map Location 54,889,264 - 55,028,048
singlet/doubletdoublet
Overlap geneSpg20, A730037C10Rik, Sohlh2
Upstream geneLOC100039937, Trpc4, Postn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik
Downstream geneDclk1, Mab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146D15.bB6Ng01-146D15.g
ACCDH943426DH943427
length3971,157
definitionDH943426|Mus musculus domesticus DNA, BAC clone: B6Ng01-146D15, 5' end.DH943427|Mus musculus domesticus DNA, BAC clone: B6Ng01-146D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,889,264 - 54,889,668)(55,026,877 - 55,028,048)
sequence
tttattctattccctttctacatttcaagaagttctattaaaaggaaata
ctcttgacatgttataaatttcaattatatttcagtaataattagaagtc
aagtattctagtctaatggggttaaaaaatatatagctattgtcttcctg
gcttaaggtggctgaggaattttggcagaagacttctgagcatttcattg
gggaagagaaaaaaattagctttctcaaaatgaaatgataagtcccccct
tctcttgcgcgcacgtacacacacacacacacacacacacacacacacac
gagagagagagagagagagagagagagagagagagagagagagagagaga
gagagagagagagagatggagagagagatatatatagataacagtat
gaattctctacagaaggttggtataaagcaaacagctcgtctgaatggtt
gacatagcaacagccatgtgcagggcttgggttaccttgtcgggaccaca
gtggagacaaaaatctgtttttgtgagtataaataacccccttgaaaatg
cttgctccaatggagagcacttctttagagggtgtacaagctaatgcaaa
agtgtgggtcagggtgctccggtgaaggcagtagccatgggtctgtggtt
agtaaataagcaagatcatttctgagactgtagtgggcctctgtcctctg
accatgacatgacttcagtcagagcaacatgaaggagacattcatgagat
catggctattgccttgccctggactcggggagtcatcagactcccatccg
aggttccagccaccactccttctcaacccccagcctaatgtgcttttgtg
gggaggtacaaagttggttatggtttgaggccccagcgatttggctttcc
tgcgtcatctaccattctggggtagggcttttctgtcagaggcatccaaa
atcctctaagtgagctgatgaaattcattagttcacccagcttgacttga
gtagcattgggttttgtggcctgttggatgtcccatctcaggcaactgga
cactttctatatcccgtcacccaggagaagtactcccacggggatcagct
aaacattagatttatttatcgagtgtgatcccggcagaatgccgtggtgt
gcgtggatgtcaggcgacagctcataggcatttggctttctccctccaac
aaatggatcctggaggctgaacacaagctaccaggtttggcaaggaatgt
ttctactctgctgagccatctcattggccctgagatcagtctttggatgt
tgtcatgctaagaggtggctagctgtctctacgaaaacacccactgtccc
actgccctgggcaagttacggaattggacaaagcaggtgtgctataatgc
caaggttttagatcacgttgatctacttacaggcctagtttcttgagtct
ctttgaaaacaacatgactcaaatatacgaacaattatctagctaaatgc
taatagaaatctaaggcactttcaaagcctggaaatctcaccagaaaata
tgcagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_54889264_54889668
seq2: B6Ng01-146D15.b_49_451

seq1  GAATTCTTTATTCTATTCCCTTTCTACATTTCAAGAAGTTCTATTAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTCTATTCCCTTTCTACATTTCAAGAAGTTCTATTAAAAG  50

seq1  GAAATACTCTTGACATGTTATAAATTTCAATTATATTTCAGTAATAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTCTTGACATGTTATAAATTTCAATTATATTTCAGTAATAATTA  100

seq1  GAAGTCAAGTATTCTAGTCTAATGGGGTTAAAAAATATATAGCTATTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCAAGTATTCTAGTCTAATGGGGTTAAAAAATATATAGCTATTGTC  150

seq1  TTCCTGGCTTAAGGTGGCTGAGGAATTTTGGCAGAAGACTTCTGAGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCTTAAGGTGGCTGAGGAATTTTGGCAGAAGACTTCTGAGCATT  200

seq1  TCATTGGGGAAGAGAAAAAAATTAGCTTTCTCAAAATGAAATGATAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGGGAAGAGAAAAAAATTAGCTTTCTCAAAATGAAATGATAAGTC  250

seq1  CCCCCTTCTCTTGCGCGCACGTACACACACACACACACACACACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTCTCTTGCGCGCACGTACACACACACACACACACACACACACAC  300

seq1  ACACACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  350
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAC--GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  348

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAAAAC  400
      |||||||||||||||||||||||| ||||||||||| | | | ||| |||
seq2  GAGAGAGAGAGAGAGAGAGAGAGATGGAGAGAGAGATATATATAGATAAC  398

seq1  AGTAT  405
      |||||
seq2  AGTAT  403

seq1: chr3_55026877_55028048
seq2: B6Ng01-146D15.g_69_1225 (reverse)

seq1  GACTGCATATTTTTCTTGGTGTTGAGAATTCCAAGCTTTTGAAATGTCCA  50
      |||||||||||||      || ||||| ||||| |||||  || || |  
seq2  GACTGCATATTTT-----CTGGTGAGATTTCCAGGCTTTGAAAGTGCC--  43

seq1  TTTAGTATTCTTATTTAGCATTTAGCTTAGATATTGGTCTGTATATTTGA  100
       ||||  ||||   |||||||||||| |||||| | ||  ||||||||||
seq2  -TTAGATTTCT--ATTAGCATTTAGC-TAGATAATTGTTCGTATATTTGA  89

seq1  GTCTATGTTGTTTTCAAAG-GACTCAGGAAAACTGGGCCTGTAAGTTGAT  149
      ||| ||||||||||||||| |||||| | ||||| ||||||||||| |||
seq2  GTC-ATGTTGTTTTCAAAGAGACTCAAG-AAACTAGGCCTGTAAGTAGAT  137

seq1  CTACGTGGAATCTAAAACTTTGGCAATAATAGCACACCTTGCTTTGTCCA  199
      | |||||  ||||||||| ||||| || |||||||||| |||||||||||
seq2  CAACGTG--ATCTAAAACCTTGGC-ATTATAGCACACC-TGCTTTGTCCA  183

seq1  ATTCCGTAACTTGCCCAGGGCAGTGGGACCAGTGGGTGTTTTCGTAGAGA  249
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTCCGTAACTTGCCCAGGGCAGTGGGA-CAGTGGGTGTTTTCGTAGAGA  232

seq1  CAGCTAGCCACCTCTTAGCATGACAACATCCAAAGACTGATCTCAGGGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGCCACCTCTTAGCATGACAACATCCAAAGACTGATCTCAGGGCC  282

seq1  AATGAGATGGCTCAGCAG-GTAGAAACATTCCCTGCCAAACCTGGTAGCT  348
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  AATGAGATGGCTCAGCAGAGTAGAAACATTCCTTGCCAAACCTGGTAGCT  332

seq1  TGTGTTCAGCCTCCAGGATCCATTTGTTGGAGGGAGAAAGCC-AATGCCT  397
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTGTTCAGCCTCCAGGATCCATTTGTTGGAGGGAGAAAGCCAAATGCCT  382

seq1  ATGAGCTGTCGCCTGACATCCACGCACACCACGGCATTCTGCCGGGATCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTGTCGCCTGACATCCACGCACACCACGGCATTCTGCCGGGATCA  432

seq1  CACTCGATAAATAAATCTAATGTTTAGCTGATCCCCGTGGGAGTACTTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGATAAATAAATCTAATGTTTAGCTGATCCCCGTGGGAGTACTTCT  482

seq1  CCTGGGTGACGGGATATAGAAAGTGTCCAGTTGCCTGAGATGGGACATCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTGACGGGATATAGAAAGTGTCCAGTTGCCTGAGATGGGACATCC  532

seq1  AACAGGCCACAAAACCCAATGCTACTCAAGTCAAGCTGGGTGAACTAATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCCACAAAACCCAATGCTACTCAAGTCAAGCTGGGTGAACTAATG  582

seq1  AATTTCATCAGCTCACTTAGAGGATTTTGGATGCCTCTGACAGAAAAGCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATCAGCTCACTTAGAGGATTTTGGATGCCTCTGACAGAAAAGCC  632

seq1  CTACCCCAGAATGGTAGATGACGCAGGAAAGCCAAATCGCTGGGGCCTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCAGAATGGTAGATGACGCAGGAAAGCCAAATCGCTGGGGCCTCA  682

seq1  AACCATAACCAACTTTGTACCTCCCCACAAAAGCACATTAGGCTGGGGGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATAACCAACTTTGTACCTCCCCACAAAAGCACATTAGGCTGGGGGT  732

seq1  TGAGAAGGAGTGGTGGCTGGAACCTCGGATGGGAGTCTGATGACTCCCCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGGAGTGGTGGCTGGAACCTCGGATGGGAGTCTGATGACTCCCCG  782

seq1  AGTCCAGGGCAAGGCAATAGCCATGATCTCATGAATGTCTCCTTCATGTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGGGCAAGGCAATAGCCATGATCTCATGAATGTCTCCTTCATGTT  832

seq1  GCTCTGACTGAAGTCATGTCATGGTCAGAGGACAGAGGCCCACTACAGTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGACTGAAGTCATGTCATGGTCAGAGGACAGAGGCCCACTACAGTC  882

seq1  TCAGAAATGATCTTGCTTATTTACTAACCACAGACCCATGGCTACTGCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATGATCTTGCTTATTTACTAACCACAGACCCATGGCTACTGCCT  932

seq1  TCACCGGAGCACCCTGACCCACACTTTTGCATTAGCTTGTACACCCTCTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGGAGCACCCTGACCCACACTTTTGCATTAGCTTGTACACCCTCTA  982

seq1  AAGAAGTGCTCTCCATTGGAGCAAGCATTTTCAAGGGGGTTATTTATACT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGCTCTCCATTGGAGCAAGCATTTTCAAGGGGGTTATTTATACT  1032

seq1  CACAAAAACAGATTTTTGTCTCCACTGTGGTCCCGACAAGGTAACCCAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAACAGATTTTTGTCTCCACTGTGGTCCCGACAAGGTAACCCAAG  1082

seq1  CCCTGCACATGGCTGTTGCTATGTCAACCATTCAGACGAGCTGTTTGCTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCACATGGCTGTTGCTATGTCAACCATTCAGACGAGCTGTTTGCTT  1132

seq1  TATACCAACCTTCTGTAGAGAATTC  1172
      |||||||||||||||||||||||||
seq2  TATACCAACCTTCTGTAGAGAATTC  1157