BAC Information

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BAC

Clone NameB6Ng01-146F24
Chromosome3 (Build37)
Map Location 65,539,077 - 65,639,868
singlet/doubletdoublet
Overlap genenone
Upstream gene4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
Downstream geneCcnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146F24.bB6Ng01-146F24.g
ACCDH943536DH943537
length1,049705
definitionDH943536|Mus musculus domesticus DNA, BAC clone: B6Ng01-146F24, 5' end.DH943537|Mus musculus domesticus DNA, BAC clone: B6Ng01-146F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,539,077 - 65,540,118)(65,639,165 - 65,639,868)
sequence
gaattctgtcttgtggattgggtttaaatccagtcataaaatggttcaat
atcaaaatctacatttattgttccatttatacagcagtcttgacctaatg
ccattgtcggtataaacaagagccgaggactagtactggtaggctggaga
gtgatcatgacagtaaggagcgggaatgagcttaatggtataccaacaat
cccatattttgactgcggtagtaactatgtgaaactatatgtcctgggtg
ggttttttgttaacttgacattatacggtcacctaggaagagggaactct
agctgaggaattactcccatcagattggcctgaagccaagtttgtggggg
cattttcttgattgttggttgatatgggagggttcagcccactgcaggca
ctaccactctcggggcagtggtcctgggttgtataagaaagcagggtgag
caaattatgaggagtgagcctgtaagcattcctccattcctctcttcagt
tactgtctccagaattgtgtgtcagttaccctgccctgatttacccttct
gatggactgtgaactgtagtctgaaatatgccttttcttcttcaagctgc
tttagggtgtttatcacagccatagaaagcaaactagaatgctgttcttg
tgctaaaattgcatagaacaagcactcatacgcaaatgagttttgcacag
ctggtttaaaatcaaaatgcttctctggagagtagagtgaaggggaaatg
gaacctttctatacatctatttgttactgtctgtaaactatttcaaaata
aaagttttttttttataaaaaacaatgtaatttttgtggttattcctcca
tttaatacctatagttttaaagccctttccttattaatgtaataaagttt
atgaacttattggtcgctactataacattgggattttcctgattataagg
ttcttggaacctcttgtaatatataacccaatacattgtatacttcactt
gcctagcctcaggcctactaagaactgtaataaatcttaaaaagataaa
gaattctgtctttaagtcatattaatccaggcctaatgcccaagttagtt
ttatatttaagtggttcaaacctacttccaggagagagactttcaatgca
tttactttatctccctagaaaatttcccccaaattccgtatttcacaggt
ctcagaagacaatgagcatcaccattataaatgtaaacagatgttcaaat
acatgttatgatgagattaaagtttatgattattcaatgtgctgccaatt
attagaaccaagattcctctattggattaaaacaataaaatctccaactg
ttctgaggctcacagctttgggtgttgagatgtgttttaggattttcagg
atgaatattgattttctttaaccactagctttcctagagagttatggact
cagaatcaatggtcacacaaaagaatcttaatgcactgggagtaggtgtt
aagtgggtcaatgtggcacatggggggcaggtctcattagcctactgttg
tcacctaggcgctagggactaaataaggcaaggctattttgtttaacttg
tggtaagtagatatggaatactggaccacaagcaacgcccccaatgcaaa
cacaaagcacctgagaatctctttaagaccttaggctggggggtcaagct
cagtgctaagactgattacttagcatgcacaaggagtggggagggagggg
aaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65539077_65540118
seq2: B6Ng01-146F24.b_44_1092

seq1  GAATTCTGTCTTGTGGATTGGGTTTAAATCCAGTCATAAAATGGTTCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTTGTGGATTGGGTTTAAATCCAGTCATAAAATGGTTCAAT  50

seq1  ATCAAAATCTACATTTATTGTTCCATTTATACAGCAGTCTTGACCTAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATCTACATTTATTGTTCCATTTATACAGCAGTCTTGACCTAATG  100

seq1  CCATTGTCGGTATAAACAAGAGCCGAGGACTAGTACTGGTAGGCTGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTCGGTATAAACAAGAGCCGAGGACTAGTACTGGTAGGCTGGAGA  150

seq1  GTGATCATGACAGTAAGGAGCGGGAATGAGCTTAATGGTATACCAACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCATGACAGTAAGGAGCGGGAATGAGCTTAATGGTATACCAACAAT  200

seq1  CCCATATTTTGACTGCGGTAGTAACTATGTGAAACTATATGTCCTGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATTTTGACTGCGGTAGTAACTATGTGAAACTATATGTCCTGGGTG  250

seq1  GGTTTTTTGTTAACTTGACATTATACGGTCACCTAGGAAGAGGGAACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTGTTAACTTGACATTATACGGTCACCTAGGAAGAGGGAACTCT  300

seq1  AGCTGAGGAATTACTCCCATCAGATTGGCCTGAAGCCAAGTTTGTGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGAATTACTCCCATCAGATTGGCCTGAAGCCAAGTTTGTGGGGG  350

seq1  CATTTTCTTGATTGTTGGTTGATATGGGAGGGTTCAGCCCACTGCAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTGATTGTTGGTTGATATGGGAGGGTTCAGCCCACTGCAGGCA  400

seq1  CTACCACTCTCGGGGCAGTGGTCCTGGGTTGTATAAGAAAGCAGGGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACTCTCGGGGCAGTGGTCCTGGGTTGTATAAGAAAGCAGGGTGAG  450

seq1  CAAATTATGAGGAGTGAGCCTGTAAGCATTCCTCCATTCCTCTCTTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTATGAGGAGTGAGCCTGTAAGCATTCCTCCATTCCTCTCTTCAGT  500

seq1  TACTGTCTCCAGAATTGTGTGTCAGTTACCCTGCCCTGATTTACCCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCTCCAGAATTGTGTGTCAGTTACCCTGCCCTGATTTACCCTTCT  550

seq1  GATGGACTGTGAACTGTAGTCTGAAATATGCCTTTTCTTCTTCAAGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACTGTGAACTGTAGTCTGAAATATGCCTTTTCTTCTTCAAGCTGC  600

seq1  TTTAGGGTGTTTATCACAGCCATAGAAAGCAAACTAGAATGCTGTTCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGTGTTTATCACAGCCATAGAAAGCAAACTAGAATGCTGTTCTTG  650

seq1  TGCTAAAATTGCATAGAACAAGCACTCATACGCAAATGAGTTTTGCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAATTGCATAGAACAAGCACTCATACGCAAATGAGTTTTGCACAG  700

seq1  CTGG-TTAAAATCAAAATGCTTCTCTGGAGAGTAGAGTGAAGGGGAAATG  749
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTAAAATCAAAATGCTTCTCTGGAGAGTAGAGTGAAGGGGAAATG  750

seq1  GAACCTTTCTATACATCTATTTGTTACTGTCTGTAAACTATTTCAAAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTTCTATACATCTATTTGTTACTGTCTGTAAACTATTTCAAAATA  800

seq1  AAAGTTTTTTTTTATAAAAAAACAATGTAA-TTTTGT-GTTATTCCTCCA  847
      |||||||||||||   |||||||||||||| |||||| ||||||||||||
seq2  AAAGTTTTTTTTTTATAAAAAACAATGTAATTTTTGTGGTTATTCCTCCA  850

seq1  TTTAATACCTATAGTTTTAAAGGCCTTTCC-TATTAATGTAATAAAGTTT  896
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  TTTAATACCTATAGTTTTAAAGCCCTTTCCTTATTAATGTAATAAAGTTT  900

seq1  ATGAAC-TAATGGTCGCATACTATAACATT-GGATTTCCCTGATAATAAG  944
      |||||| || ||||||| |||||||||||| |||||| |||||| |||||
seq2  ATGAACTTATTGGTCGC-TACTATAACATTGGGATTTTCCTGATTATAAG  949

seq1  GTTC-TGGAA-CTCTTGTAATAGTATAACCCAATACATTGTATAC-TCAC  991
      |||| ||||| ||||||||||| |||||||||||||||||||||| ||||
seq2  GTTCTTGGAACCTCTTGTAATA-TATAACCCAATACATTGTATACTTCAC  998

seq1  TTGCCTAAGCTCAGGGCTACAAAGAACAGAAATAAATCTTAAAAAGATAA  1041
      |||||||  |||||| |||| |||||| | ||||||||||||||||||||
seq2  TTGCCTAGCCTCAGGCCTACTAAGAACTGTAATAAATCTTAAAAAGATAA  1048

seq1  A  1042
      |
seq2  A  1049

seq1: chr3_65639165_65639868
seq2: B6Ng01-146F24.g_67_771 (reverse)

seq1  CTTTTCCCCTCCCTCCCCACTCCTTGTGCATGCTAAGTAATCAGTCTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCCTCCCTCCCCACTCCTTGTGCATGCTAAGTAATCAGTCTTAG  50

seq1  CACTGAGCTTGA-CCCCCAGCCTAAGGTCTTAAAGAGATTCTCAGGTGCT  99
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCTTGACCCCCCAGCCTAAGGTCTTAAAGAGATTCTCAGGTGCT  100

seq1  TTGTGTTTGCATTGGGGGCGTTGCTTGTGGTCCAGTATTCCATATCTACT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTGCATTGGGGGCGTTGCTTGTGGTCCAGTATTCCATATCTACT  150

seq1  TACCACAAGTTAAACAAAATAGCCTTGCCTTATTTAGTCCCTAGCGCCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAAGTTAAACAAAATAGCCTTGCCTTATTTAGTCCCTAGCGCCTA  200

seq1  GGTGACAACAGTAGGCTAATGAGACCTGCCCCCCATGTGCCACATTGACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAACAGTAGGCTAATGAGACCTGCCCCCCATGTGCCACATTGACC  250

seq1  CACTTAACACCTACTCCCAGTGCATTAAGATTCTTTTGTGTGACCATTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAACACCTACTCCCAGTGCATTAAGATTCTTTTGTGTGACCATTGA  300

seq1  TTCTGAGTCCATAACTCTCTAGGAAAGCTAGTGGTTAAAGAAAATCAATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTCCATAACTCTCTAGGAAAGCTAGTGGTTAAAGAAAATCAATA  350

seq1  TTCATCCTGAAAATCCTAAAACACATCTCAACACCCAAAGCTGTGAGCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTGAAAATCCTAAAACACATCTCAACACCCAAAGCTGTGAGCCT  400

seq1  CAGAACAGTTGGAGATTTTATTGTTTTAATCCAATAGAGGAATCTTGGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGTTGGAGATTTTATTGTTTTAATCCAATAGAGGAATCTTGGTT  450

seq1  CTAATAATTGGCAGCACATTGAATAATCATAAACTTTAATCTCATCATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAATTGGCAGCACATTGAATAATCATAAACTTTAATCTCATCATAA  500

seq1  CATGTATTTGAACATCTGTTTACATTTATAATGGTGATGCTCATTGTCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTTGAACATCTGTTTACATTTATAATGGTGATGCTCATTGTCTT  550

seq1  CTGAGACCTGTGAAATACGGAATTTGGGGGAAATTTTCTAGGGAGATAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACCTGTGAAATACGGAATTTGGGGGAAATTTTCTAGGGAGATAAA  600

seq1  GTAAATGCATTGAAAGTCTCTCTCCTGGAAGTAGGTTTGAACCACTTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGCATTGAAAGTCTCTCTCCTGGAAGTAGGTTTGAACCACTTAAA  650

seq1  TATAAAACTAACTTGGGCATTAGGCCTGGATTAATATGACTTAAAGACAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACTAACTTGGGCATTAGGCCTGGATTAATATGACTTAAAGACAG  700

seq1  AATTC  704
      |||||
seq2  AATTC  705