BAC Information

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BAC

Clone NameB6Ng01-146I09
Chromosome3 (Build37)
Map Location 37,261,379 - 37,389,282
singlet/doubletdoublet
Overlap geneFgf2, LOC100040649, Nudt6, Spata5
Upstream geneAnxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3, 4932438A13Rik, Tenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328
Downstream geneLOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785, LOC665838, Ankrd50, LOC100041378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146I09.bB6Ng01-146I09.g
ACCDH943647DH943648
length1,2271,052
definitionDH943647|Mus musculus domesticus DNA, BAC clone: B6Ng01-146I09, 5' end.DH943648|Mus musculus domesticus DNA, BAC clone: B6Ng01-146I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,388,039 - 37,389,282)(37,261,379 - 37,262,441)
sequence
gaattcaaatttcttactggtctcctttataataaactaaacttctcaaa
atacttcctgtttggcacagacactgcttgtcatagttcatcttggcact
ttggaattaaccgagaagggtgtggtcttttctaggtaactgtcccaaac
acccatatcctttcttcacatgttttctccgtcctagttaaccaacaatt
gtacatttaactgtaaagatactatttctctttcctacataaatccttat
gactttcctttgattttactgagcagctagtgtttttcttaaaatcagag
atgaagtgtgagttgaccagtcggtgatatactacataatcacttaaatt
tatccttttgcatctatttaacatctatttaacttcttgttttcatctcc
taaattaactactaaagacttactgttagactttagtttctgcctcttca
agtctaatacaaacactgaagagttttcataaaatgtgaatttagttcag
aaattatttcctcgcagcctactaaattctgaactatttcacaatataat
ttcaatttatttgccaagctttatcatctactaatatattagcaattctg
acccacaaaacttagaatatacaccattttctaaacacacttcttgcttt
cataatggtgtaatgagtacccttctttcccctttctttctttgtatctt
accatcatctactaattaggttacacctaaaataaataagtgattcactt
tggccgaatagagagacataccccaagaccatcaatttttctacaggcaa
aatacagataatgcctcttttttaaaacacaaacaactatggacagctgc
tggcatactcacctcatgtttctaacaatgtcagacttgctgtgatggaa
tgctagaatgccttcttgtctgtatcatctttcttacctaatacttcttc
cgacatgattctctcaggctttgtttctcacagtgtatcttcttcctttc
atcatatactgtgaactagaagctaaccaacttggtgagttccctattaa
ctttctgagaatcagacttctaacactccaatctactggaatatttctgt
acatcaaaggttgttactctctttttatgatgtttgtttgcctgtttttc
agaagtttccctgtatagcctgctgccctggaatccatgtgtagacttga
actcgaatccgctcgccctctgtctcc
gaattcatggatctgtccgacctcattcagataatgggattcttacactg
agaggcagatttcctccgccctacagggaggagagctaggtggtcagcgt
tcaccgctgtatccaaggaccatacatttactcagtattgaactaatgaa
tgaatgaatgaatgaatgaatgaatgaatgacaattttgagggcgtgttt
ttttcctctttagaaacagaattgtttaaatctcaaatacaagcttatgg
atcaaggatcattcctcattttacagataagaaaagatttttcacttgag
gcatttcaagccatggtctctgtctatgagaacaagcagtgaattctgca
ttctagaatcgtcctgtttagaagacaggcccacagtagagttccacgtg
acagaaatgtgaacaaaaactagttttgtggcagtgagatccaatttctg
attttgcttgacgtactgaacaatgcatccacgttaagagcatggaaatt
aagaaccaaggctcaggggctggcagaggaaagctgctatcctcaaggtc
caagtggccatacaatgaagagaacatgacatgagtcatgaaaacatctt
ccagaagcaaagatagtttgttttctctgatgaagagaagtttgttcgtt
tttctcccaagttatctgagtttgtaggggtgggtacctgggaatacatc
ctaggtctttgaagttacaacatttctctttggatgggggctatgttatg
cataaagctaaaggaagccatctgcccctcccccagtttgtttcttgctt
aggccaaggctttatttctgtttttattttgacattatttgtttgttatt
tatgattccctatgtagcctttggctgtcatggaactcactttgtagacc
tggaactcccagaagatctgcctgtctctgccttgctctgtctgcctctg
cctactctgcctgcctctgctacgagtacagaattaaaggggtgcactac
attactggcttatttgactttcagatcaggtgttctgcttgtccactgtt
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_37388039_37389282
seq2: B6Ng01-146I09.b_50_1276 (reverse)

seq1  GGAGGCAGA-GGCAGGCGGATTTCTGAGTTCAAGGTCTACAACATGAGTT  49
      |||| |||| |||  |||||||   |||||||| |||||| |||||  ||
seq2  GGAGACAGAGGGCGAGCGGATT--CGAGTTCAA-GTCTAC-ACATGGATT  46

seq1  CCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAGCAA  99
      ||||| ||||   |||||||||| |||||    ||| |||||||| ||||
seq2  CCAGGGCAGC--AGGCTATACAGGGAAAC---TTCT-GAAAAACAGGCAA  90

seq1  ACAAACAAACAAAAAAAAGAGTATACAAACACTGTTTGATGTACAGAAAT  149
      |||||||    ||||| |||||| |||| |    ||||||||||||||||
seq2  ACAAACATCATAAAAAGAGAGTA-ACAACC----TTTGATGTACAGAAAT  135

seq1  ATTCCAGTAGAGTGGAGGTTGTTAGAAGGTCTGATTCCTCAGAAGGTAAA  199
      ||||||||||| |||||  |||||||| |||||||| ||||||| || ||
seq2  ATTCCAGTAGATTGGAG--TGTTAGAA-GTCTGATT-CTCAGAAAGTTAA  181

seq1  TA-GGAACTCACCAAG-TAGATAGCTTCTAGTTCACAGTATATGATGGAG  247
      || ||||||||||||| | | |||||||||||||||||||||||||| | 
seq2  TAGGGAACTCACCAAGTTGGTTAGCTTCTAGTTCACAGTATATGATGAAA  231

seq1  GGAAGAAGATACACTGTGAGAAACAAAGCCTGAGAGAATCATGTCGGAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGATACACTGTGAGAAACAAAGCCTGAGAGAATCATGTCGGAAG  281

seq1  AAGTATTAGGTAAGAAAGATGATACAGAACAAGAAGGCATTCTAGCATTC  347
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAGTATTAGGTAAGAAAGATGATACAG-ACAAGAAGGCATTCTAGCATTC  330

seq1  CATCACAGCAAGTCTGACATTGTTAGTAACATGAGGTGAGTATGCCAGCA  397
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATCACAGCAAGTCTGACATTGTTAGAAACATGAGGTGAGTATGCCAGCA  380

seq1  GCTGTCCATAGTTGTTTGTGTTTTAAAAAAGAGGCATTATCTGTATTTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCATAGTTGTTTGTGTTTTAAAAAAGAGGCATTATCTGTATTTTG  430

seq1  CCTGTAGAAAAATTGATGGTCTTGGGGTATGTCTCTCTATTCGGCCAAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGAAAAATTGATGGTCTTGGGGTATGTCTCTCTATTCGGCCAAAG  480

seq1  TGAATCACTTATTTATTTTAGGTGTAACCTAATTAGTAGATGATGGTAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCACTTATTTATTTTAGGTGTAACCTAATTAGTAGATGATGGTAAG  530

seq1  ATACAAAGAAAGAAAGGGGAAAGAAGGGTACTCATTACACCATTATGAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAGAAAGAAAGGGGAAAGAAGGGTACTCATTACACCATTATGAAA  580

seq1  GCAAGAAGTGTGTTTAGAAAATGGTGTATATTCTAAGTTTTGTGGGTCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAAGTGTGTTTAGAAAATGGTGTATATTCTAAGTTTTGTGGGTCAG  630

seq1  AATTGCTAATATATTAGTAGATGATAAAGCTTGGCAAATAAATTGAAATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTAATATATTAGTAGATGATAAAGCTTGGCAAATAAATTGAAATT  680

seq1  ATATTGTGAAATAGTTCAGAATTTAGTAGGCTGCGAGGAAATAATTTCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGAAATAGTTCAGAATTTAGTAGGCTGCGAGGAAATAATTTCTG  730

seq1  AACTAAATTCACATTTTATGAAAACTCTTCAGTGTTTGTATTAGACTTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATTCACATTTTATGAAAACTCTTCAGTGTTTGTATTAGACTTGA  780

seq1  AGAGGCAGAAACTAAAGTCTAACAGTAAGTCTTTAGTAGTTAATTTAGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGAAACTAAAGTCTAACAGTAAGTCTTTAGTAGTTAATTTAGGA  830

seq1  GATGAAAACAAGAAGTTAAATAGATGTTAAATAGATGCAAAAGGATAAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAACAAGAAGTTAAATAGATGTTAAATAGATGCAAAAGGATAAAT  880

seq1  TTAAGTGATTATGTAGTATATCACCGACTGGTCAACTCACACTTCATCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGATTATGTAGTATATCACCGACTGGTCAACTCACACTTCATCTC  930

seq1  TGATTTTAAGAAAAACACTAGCTGCTCAGTAAAATCAAAGGAAAGTCATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTAAGAAAAACACTAGCTGCTCAGTAAAATCAAAGGAAAGTCATA  980

seq1  AGGATTTATGTAGGAAAGAGAAATAGTATCTTTACAGTTAAATGTACAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTATGTAGGAAAGAGAAATAGTATCTTTACAGTTAAATGTACAAT  1030

seq1  TGTTGGTTAACTAGGACGGAGAAAACATGTGAAGAAAGGATATGGGTGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTTAACTAGGACGGAGAAAACATGTGAAGAAAGGATATGGGTGTT  1080

seq1  TGGGACAGTTACCTAGAAAAGACCACACCCTTCTCGGTTAATTCCAAAGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAGTTACCTAGAAAAGACCACACCCTTCTCGGTTAATTCCAAAGT  1130

seq1  GCCAAGATGAACTATGACAAGCAGTGTCTGTGCCAAACAGGAAGTATTTT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGATGAACTATGACAAGCAGTGTCTGTGCCAAACAGGAAGTATTTT  1180

seq1  GAGAAGTTTAGTTTATTATAAAGGAGACCAGTAAGAAATTTGAATTC  1244
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTTTAGTTTATTATAAAGGAGACCAGTAAGAAATTTGAATTC  1227

seq1: chr3_37261379_37262441
seq2: B6Ng01-146I09.g_70_1121

seq1  GAATTCATGGATCTGTCCGACCTCATTCAGATAATGGGATTCTTACACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGATCTGTCCGACCTCATTCAGATAATGGGATTCTTACACTG  50

seq1  AGAGGCAGATTTCCTCCGCCCTACAGGGAGGAGAGCTAGGTGGTCAGCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGATTTCCTCCGCCCTACAGGGAGGAGAGCTAGGTGGTCAGCGT  100

seq1  TCACCGCTGTATCCAAGGACCATACATTTACTCAGTATTGAACTAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGCTGTATCCAAGGACCATACATTTACTCAGTATTGAACTAATGAA  150

seq1  TGAATGAATGAATGAATGAATGAATGAATGACAATTTTGAGGGCGTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATGAATGAATGAATGAATGAATGACAATTTTGAGGGCGTGTTT  200

seq1  TTTTCCTCTTTAGAAACAGAATTGTTTAAATCTCAAATACAAGCTTATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTTTAGAAACAGAATTGTTTAAATCTCAAATACAAGCTTATGG  250

seq1  ATCAAGGATCATTCCTCATTTTACAGATAAGAAAAGATTTTTCACTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGATCATTCCTCATTTTACAGATAAGAAAAGATTTTTCACTTGAG  300

seq1  GCATTTCAAGCCATGGTCTCTGTCTATGAGAACAAGCAGTGAATTCTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCAAGCCATGGTCTCTGTCTATGAGAACAAGCAGTGAATTCTGCA  350

seq1  TTCTAGAATCGTCCTGTTTAGAAGACAGGCCCACAGTAGAGTTCCACGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGAATCGTCCTGTTTAGAAGACAGGCCCACAGTAGAGTTCCACGTG  400

seq1  ACAGAAATGTGAACAAAAACTAGTTTTGTGGCAGTGAGATCCAATTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGTGAACAAAAACTAGTTTTGTGGCAGTGAGATCCAATTTCTG  450

seq1  ATTTTGCTTGACGTACTGAACAATGCATCCACGTTAAGAGCATGGAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTTGACGTACTGAACAATGCATCCACGTTAAGAGCATGGAAATT  500

seq1  AAGAACCAAGGCTCAGGGGCTGGCAGAGGAAAGCTGCTATCCTCAAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCAAGGCTCAGGGGCTGGCAGAGGAAAGCTGCTATCCTCAAGGTC  550

seq1  CAAGTGGCCATACAATGAAGAGAACATGACATGAGTCATGAAAACATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGCCATACAATGAAGAGAACATGACATGAGTCATGAAAACATCTT  600

seq1  CCAGAAGCAAAGATAGTTTGTTTTCTCTGATGAAGAGAAGTTTGTTCGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCAAAGATAGTTTGTTTTCTCTGATGAAGAGAAGTTTGTTCGTT  650

seq1  TTTCTCCCAAGTTATCTGAGTTTGTAGGGGTGGGTACCTGGGAATACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCAAGTTATCTGAGTTTGTAGGGGTGGGTACCTGGGAATACATC  700

seq1  CTAGGTCTTTGAAGTTACAACATTTCTCTTTGGATGGGGGCTATGTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCTTTGAAGTTACAACATTTCTCTTTGGATGGGGGCTATGTTATG  750

seq1  CATAAAGCTAAAGGAAGCCATCTGCCCCTCCCCCAGTTTGTTTCTTGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGCTAAAGGAAGCCATCTGCCCCTCCCCCAGTTTGTTTCTTGCTT  800

seq1  AGGCCAAGGCTTTATTTCTGTTTTTATTTTGACATTTATTTGTTTGTTTA  850
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  AGGCCAAGGCTTTATTTCTGTTTTTATTTTGACA-TTATTTGTTTG-TTA  848

seq1  TTTATGATTTCCCTATGTAGCC-TTGGCTGTCATGGAACTCACTTTGTAG  899
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  TTTATGA-TTCCCTATGTAGCCTTTGGCTGTCATGGAACTCACTTTGTAG  897

seq1  ACCTGGAACTCACAG-AGATCTGCCTGTCTCTGCCTGCCTCTGTCTGCCT  948
      ||||||||||| ||| ||||||||||||||||||||  ||||||||||||
seq2  ACCTGGAACTCCCAGAAGATCTGCCTGTCTCTGCCTTGCTCTGTCTGCCT  947

seq1  CTGCCTACCTCTGCCTGCCTCTGCCTACCGAGTACAGGAATTAAAGGTGT  998
      ||||||| ||||||||||||||| ||| |||||||| |||||||||| ||
seq2  CTGCCTA-CTCTGCCTGCCTCTG-CTA-CGAGTACA-GAATTAAAGGGGT  993

seq1  GCACTACCATTACCTGGCTTATTTTGACTTCTAGATCATGGTGTTCCTGC  1048
      |||||| ||||| |||||||| ||||||||  |||||| |||||| ||||
seq2  GCACTA-CATTA-CTGGCTTA-TTTGACTTTCAGATCA-GGTGTT-CTGC  1038

seq1  TGTTCCTACTGTTAA  1063
      |  ||| ||||||||
seq2  TTGTCC-ACTGTTAA  1052