BAC Information

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BAC

Clone NameB6Ng01-146I11
Chromosome3 (Build37)
Map Location 155,093,256 - 155,224,293
singlet/doubletdoublet
Overlap geneScp2-ps1
Upstream geneLOC100040810, LOC100040829, Tyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44, EG383956
Downstream geneEG668902, LOC624519, LOC100040901, 4930570G19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146I11.bB6Ng01-146I11.g
ACCDH943651DH943652
length1,1141,056
definitionDH943651|Mus musculus domesticus DNA, BAC clone: B6Ng01-146I11, 5' end.DH943652|Mus musculus domesticus DNA, BAC clone: B6Ng01-146I11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,223,165 - 155,224,293)(155,093,256 - 155,094,316)
sequence
gaattcttagtcagacatttgcttcaaagtaacttaataaagtaagaatt
gctatgctgtagcaagatcaatgccattttctaagttgtctaccttctac
tatagagcagcattactcttaatgccttcacttttctttatatcatggaa
cagcaggtggaccatgagtccagcacattcaagtgcatgttcttaaggga
gtagctaaagaaaccagcaactccattatgacctgtgttttctagggtat
gaacttttcaaagtagaacagctaaattcggtgagcttatttaattaagt
ctgaaaccttttagagctttctccttgaaagcaccccatccccccaaagc
aaactttaataggatgacactaaagtagtctgaaagtatggggagaagtt
ttacatctatgccactcagatattttaaaattaaggatataagtgagtga
cattttgttgcattgaattttagaaacatctttcatttgaaaatatttcc
agacatttaacaagtccaaaatgtgacaagatttatctcttcccaattta
gatgtctgatttgactaatgaggcagtgcttttcatctgaaaatgtttcc
attttggatttatttttgcttaagcttccttcagttcacagcatggctct
ggagcagccatcttgcctttactggctttccccatgtttaactgagaatt
tgattctttattgactgctttgggaactgtggccactgagaatttcagtc
aagtttcactcatggaatttatttaaagtaattggatcctgactcccatt
atccagtcagggacaggaatggggcaaggagggtaaccttcaaattttta
aacaaacaaacaaacaaacaaacaagcgaaacagacacacacttactttt
tctataatttttatttgctttgcatcatgtcacagccggctccccctttc
ctcccagttctgcccttcaaatccttcgctctatagcacctcctattctc
ctcagacaagaagaagttcccttccttgtcaccatggaacagctattccc
agcaggtctaagccatcctccccataaaggttattcaagcagtcaggtag
ggaaggggcctcca
gaattccatccatctgaccctcttgatcatccttgtccccagcagtgtat
cctgccaatgtgaagacacaaatgcagttcacattaagatcacacgccta
gtaaattgttagtttctgtgaagaataattagttcagttttcttagtgta
ttgaagaaaaatcttgacattttaagtaggtgtgaaaggaatatgttata
gaaaactacaattaacctcatactagaaagtgacttcatgtgatcagtgc
acacttccaacaatgctcttcagacagattgcctcccttgataatgtcac
aggctgtgtgattaacatggcagttggcagagcgctgtggaaggaggcaa
gcatcagacacaatggatgtgcttctgcttaaggtgtgtttctgttctgt
ttgccagatgtggtctctggtttcttctccctttgccagtggaaattact
aatggtttttattttatctgggcttattcagtcacagggtttactcaatc
cttcgaggtacaggaagcaacctttgcttttggggatcaactgatgtagg
gataaagaaacttagggtctaccctgaagttctgccaacactggttaaat
agggaacctctttttgtctttcctctggtcacatgcagctacgagcataa
ctaggacagtcacagaaggatcaaaccagctgaaagaattcaagacacat
gaagatgctaaaagtaatctcacttttctagtttctctgcaatgacatca
aaaatttttgttgcagtagtcactggtacacaccatattcagaaaacaaa
acgaaggaacaaaacctaaagagggtccttgccctccaacctcaatcaaa
attcatttgaatacagttttagaattattgattgactgtcaaaatatacc
tgcactcatgacttttctttacactatagaccaaatgaacgtccaatgag
aagcaacttaagggggatgcagtggggcccagttgctcatggtgagggag
tgtgccacagcatggtgaggcagcaagtcacttgtgtcctgggtaagaag
gagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_155223165_155224293
seq2: B6Ng01-146I11.b_45_1158 (reverse)

seq1  TGGAGCCCCCTCCCCTACCTGGACTGCCTTGATGAACCTTAATGGGAGAG  50
      ||||| ||||| |||||||| ||||| |||||  |||||| ||||| |||
seq2  TGGAGGCCCCTTCCCTACCT-GACTG-CTTGAATAACCTTTATGGG-GAG  47

seq1  GATGTGCTTAGACCTGCTGGGAATAGCTGTTCCATGGTGACAGGGAAGGG  100
      |||| ||||||||||||||||||||||||||||||||||||| |||| ||
seq2  GATG-GCTTAGACCTGCTGGGAATAGCTGTTCCATGGTGACAAGGAA-GG  95

seq1  GAACTTCCTCTTGTCTGAGGAGAATAGGAGGTGCTAATAGAGCGAAGGAT  150
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  GAACTTCTTCTTGTCTGAGGAGAATAGGAGGTGCT-ATAGAGCGAAGGAT  144

seq1  TTGAAGGGCAGAACTGGGAGGAAAGGTGGGAGGCCGGCTGTGACAATGAT  200
      |||||||||||||||||||||||||| |||| |||||||||||| |||||
seq2  TTGAAGGGCAGAACTGGGAGGAAAGG-GGGA-GCCGGCTGTGAC-ATGAT  191

seq1  GCAAAGCAAATAAAAAATTATAGAAAAAGTAAGTGTGTGGTCTGTTTTCG  250
      ||||||||||| |||||||||||||||||||||||||| ||||| |||||
seq2  GCAAAGCAAAT-AAAAATTATAGAAAAAGTAAGTGTGT-GTCTG-TTTCG  238

seq1  CTTGTTTGTTTGTTTGTTTTGTTTTGTTTTAAAAATTTGAAGGTTACCCT  300
      |||||||||||||||| |||||||   |||||||||||||||||||||||
seq2  CTTGTTTGTTTGTTTG-TTTGTTT--GTTTAAAAATTTGAAGGTTACCCT  285

seq1  CCTTGCCCCATTCCTGTCCCTGACTGGATAATGGGAGTCAGGATCCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCCCATTCCTGTCCCTGACTGGATAATGGGAGTCAGGATCCAATT  335

seq1  ACTTTAAATAAATTCCATGAGTGAAACTTGACTGAAATTCTCAGTGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAATAAATTCCATGAGTGAAACTTGACTGAAATTCTCAGTGGCCA  385

seq1  CAGTTCCCAAAGCAGTCAATAAAGAATCAAATTCTCAGTTAAACATGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCAAAGCAGTCAATAAAGAATCAAATTCTCAGTTAAACATGGGG  435

seq1  AAAGCCAGTAAAGGCAAGATGGCTGCTCCAGAGCCATGCTGTGAACTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGTAAAGGCAAGATGGCTGCTCCAGAGCCATGCTGTGAACTGAA  485

seq1  GGAAGCTTAAGCAAAAATAAATCCAAAATGGAAACATTTTCAGATGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTTAAGCAAAAATAAATCCAAAATGGAAACATTTTCAGATGAAAA  535

seq1  GCACTGCCTCATTAGTCAAATCAGACATCTAAATTGGGAAGAGATAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCCTCATTAGTCAAATCAGACATCTAAATTGGGAAGAGATAAATC  585

seq1  TTGTCACATTTTGGACTTGTTAAATGTCTGGAAATATTTTCAAATGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACATTTTGGACTTGTTAAATGTCTGGAAATATTTTCAAATGAAAG  635

seq1  ATGTTTCTAAAATTCAATGCAACAAAATGTCACTCACTTATATCCTTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTAAAATTCAATGCAACAAAATGTCACTCACTTATATCCTTAAT  685

seq1  TTTAAAATATCTGAGTGGCATAGATGTAAAACTTCTCCCCATACTTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATATCTGAGTGGCATAGATGTAAAACTTCTCCCCATACTTTCAG  735

seq1  ACTACTTTAGTGTCATCCTATTAAAGTTTGCTTTGGGGGGATGGGGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTTAGTGTCATCCTATTAAAGTTTGCTTTGGGGGGATGGGGTGCT  785

seq1  TTCAAGGAGAAAGCTCTAAAAGGTTTCAGACTTAATTAAATAAGCTCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGAGAAAGCTCTAAAAGGTTTCAGACTTAATTAAATAAGCTCACC  835

seq1  GAATTTAGCTGTTCTACTTTGAAAAGTTCATACCCTAGAAAACACAGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTAGCTGTTCTACTTTGAAAAGTTCATACCCTAGAAAACACAGGTC  885

seq1  ATAATGGAGTTGCTGGTTTCTTTAGCTACTCCCTTAAGAACATGCACTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGAGTTGCTGGTTTCTTTAGCTACTCCCTTAAGAACATGCACTTG  935

seq1  AATGTGCTGGACTCATGGTCCACCTGCTGTTCCATGATATAAAGAAAAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCTGGACTCATGGTCCACCTGCTGTTCCATGATATAAAGAAAAGT  985

seq1  GAAGGCATTAAGAGTAATGCTGCTCTATAGTAGAAGGTAGACAACTTAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCATTAAGAGTAATGCTGCTCTATAGTAGAAGGTAGACAACTTAGA  1035

seq1  AAATGGCATTGATCTTGCTACAGCATAGCAATTCTTACTTTATTAAGTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCATTGATCTTGCTACAGCATAGCAATTCTTACTTTATTAAGTTA  1085

seq1  CTTTGAAGCAAATGTCTGACTAAGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  CTTTGAAGCAAATGTCTGACTAAGAATTC  1114

seq1: chr3_155093256_155094316
seq2: B6Ng01-146I11.g_65_1120

seq1  GAATTCCATCCATCTGACCCTCTTGATCATCCTTGTCCCCAGCAGTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCATCTGACCCTCTTGATCATCCTTGTCCCCAGCAGTGTAT  50

seq1  CCTGCCAATGTGAAGACACAAATGCAGTTCACATTAAGATCACACGCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAATGTGAAGACACAAATGCAGTTCACATTAAGATCACACGCCTA  100

seq1  GTAAATTGTTAGTTTCTGTGAAGAATAATTAGTTCAGTTTTCTTAGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGTTAGTTTCTGTGAAGAATAATTAGTTCAGTTTTCTTAGTGTA  150

seq1  TTGAAGAAAAATCTTGACATTTTAAGTAGGTGTGAAAGGAATATGTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAAAAATCTTGACATTTTAAGTAGGTGTGAAAGGAATATGTTATA  200

seq1  GAAAACTACAATTAACCTCATACTAGAAAGTGACTTCATGTGATCAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTACAATTAACCTCATACTAGAAAGTGACTTCATGTGATCAGTGC  250

seq1  ACACTTCCAACAATGCTCTTCAGACAGATTGCCTCCCTTGATAATGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCCAACAATGCTCTTCAGACAGATTGCCTCCCTTGATAATGTCAC  300

seq1  AGGCTGTGTGATTAACATGGCAGTTGGCAGAGCGCTGTGGAAGGAGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGTGATTAACATGGCAGTTGGCAGAGCGCTGTGGAAGGAGGCAA  350

seq1  GCATCAGACACAATGGATGTGCTTCTGCTTAAGGTGTGTTTCTGTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGACACAATGGATGTGCTTCTGCTTAAGGTGTGTTTCTGTTCTGT  400

seq1  TTGCCAGATGTGGTCTCTGGTTTCTTCTCCCTTTGCCAGTGGAAATTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGATGTGGTCTCTGGTTTCTTCTCCCTTTGCCAGTGGAAATTACT  450

seq1  AATGGTTTTTATTTTATCTGGGCTTATTCAGTCACAGGGTTTACTCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTTTTATTTTATCTGGGCTTATTCAGTCACAGGGTTTACTCAATC  500

seq1  CTTCGAGGTACAGGAAGCAACCTTTGCTTTTGGGGATCAACTGATGTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAGGTACAGGAAGCAACCTTTGCTTTTGGGGATCAACTGATGTAGG  550

seq1  GATAAAGAAACTTAGGGTCTACCCTGAAGTTCTGCCAACACTGGTTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGAAACTTAGGGTCTACCCTGAAGTTCTGCCAACACTGGTTAAAT  600

seq1  AGGGAACCTCTTTTTGTCTTTCCTCTGGTCACATGCAGCTACGAGCATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACCTCTTTTTGTCTTTCCTCTGGTCACATGCAGCTACGAGCATAA  650

seq1  CTAGGACAGTCACAGAAGGATCAAACCAGCTGAAAGAATTCAAGACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACAGTCACAGAAGGATCAAACCAGCTGAAAGAATTCAAGACACAT  700

seq1  GAAGATGCTAAAAGTAATCTCACTTTTCTAGTTTCTCTGCAATGACATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGCTAAAAGTAATCTCACTTTTCTAGTTTCTCTGCAATGACATCA  750

seq1  AAAATTTTTGTTGCAGTAGTCACTGGTACACACCATATTCAGAAAACAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTTGTTGCAGTAGTCACTGGTACACACCATATTCAGAAAACAAA  800

seq1  ACGAAGGAACAAAACCTTAAGAGGGTCCTTGCCCTTCCAACCTCAATCAA  850
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  ACGAAGGAACAAAACCTAAAGAGGGTCCTTGCCC-TCCAACCTCAATCAA  849

seq1  AATTCATTTGAATACAGTTTTAGAATTATTGATTGACTGTCAAAATTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATTCATTTGAATACAGTTTTAGAATTATTGATTGACTGTCAAAA-TATA  898

seq1  CCTGCACTCATGACTTTTCTTTACACTATAGACCAAATGAACGTCCAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACTCATGACTTTTCTTTACACTATAGACCAAATGAACGTCCAATG  948

seq1  AGAAGCAACTTAAGGGGGATGCAGTGGGGCCCAGTTGCTCATGGTGAGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAACTTAAGGGGGATGCAGTGGGGCCCAGTTGCTCATGGTGAGGG  998

seq1  AGGTGTGGCAACAGCAGGGTGAGGCAGCAAGTCACCTTGTGTCCATGGGT  1050
      | |||| || |||||| ||||||||||||||||| ||||||||| |||||
seq2  A-GTGT-GCCACAGCATGGTGAGGCAGCAAGTCA-CTTGTGTCC-TGGGT  1044

seq1  -AGAAGGAGAGA  1061
       |||||||||||
seq2  AAGAAGGAGAGA  1056