BAC Information

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BAC

Clone NameB6Ng01-146K18
Chromosome3 (Build37)
Map Location 12,867,886 - 13,007,025
singlet/doubletdoublet
Overlap geneLOC668037
Upstream geneEG621965, LOC100039798, EG668033
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146K18.bB6Ng01-146K18.g
ACCDH943749DH943750
length1,0421,025
definitionDH943749|Mus musculus domesticus DNA, BAC clone: B6Ng01-146K18, 5' end.DH943750|Mus musculus domesticus DNA, BAC clone: B6Ng01-146K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,867,886 - 12,868,923)(13,005,989 - 13,007,025)
sequence
gaattccagtccagtgtttacctggctttccagctaagcaatctcctttt
agatctagagttttgatgttgcttctatgcacaggcactggaattccttt
tgtgtcctttagctcaggtgatttctatcttatctctggtctcaggtttc
atgaatgcatcttatcatactcatagtttacaatagagttaaaaggtata
tgcaacaaatatataaaatatgtgctaatacttttttataaaattaaaaa
cattaggaatatccttctgatttcagaagaaacaagtataaggataattt
cacatagaaaagatgtatttgagtaaacacaattacaaagaaatgcacga
agatgagcttgcataattatctctaccatgaagaaattatcctccatgac
aattctgcttgcattgaattgattacatttgtgtttcatggtcctgacaa
catgtacaagatattttagatgaagaagtagttttgatcaaactgtgtca
ctgcatgttttaatacttcaaaatatgagttccatctgaagttgttggtg
tttcaaacatttatgatgtcctagattttttgaagcttgagtgtgtaatc
aagacataaataaactttttgtgattttccttaatgttggtggatgaatt
aaatttatttctactgttttcatctgctcttgtctttaatattggtttat
atattttgttgttttgctttttccccaacacacttgatttatggttaatg
agcacttatatatggatgtgtagtggtcagaaaacacctttcattcacaa
gggaagagtgacatattcctttcctaagtgaattcttatctcatttgcac
tctgttatcaaaattgcaaaaaatcctgcagatagattcaatgttttctc
caccagcagtttaatacttgggttctatggtaaagtcttaatcaaattgc
tagattccaaaagtaagttttccttccccagactcactgcttaatggagt
ttcagcaatctattttttctctctttttttatttgggaatca
gaattctattttcaactttttcttctttcataacatttatacttgtcaga
aactacttttctttatgttgtatgtttgtttttatttctactttcagttg
aaatttcatctttggtgtgcagaacaatgaacagattgttgaacagatgt
tccagataaataggtagaatttttttatggaaactgtagttttgaagcat
ctaaagctagtttttccatacattttaaaattaatgaggagaatatagtt
atatttcatagtctagttttaccaaggagcaattgcaaactcattatcat
catcatatttcttttgtgtgtatgtttcttccttttctgtgtgccttttt
ttcttgcttagtttcctcatatttttttctcacttcttttatttctgtac
agatatcggatttctctgagtgttgcttataacatttattcttgttccta
aagtctaacatttactggattttgcaaaagaggaaattaaaatagcgagc
tcagtagttcaaggtcagttattaatgtctagccctatgaggagacacta
gagatacaaatgatgatactgggttttgaggaggatctgcatgaggtttt
tattattgcttattatgaagataagtcattgagtatatcaacttacacat
tgcatccagtttaatgactctctttattgttgcacagaactgtgcatcag
catagattataagctactgtttttgttttttaatctcccattcaggaaat
gaatatccctccatgaaatattaatactctcagccttcagcttctaagat
atgacctattttttagcagtcattcttactgaatatagtaaaaagtaagg
tttgtttattaaaataaaatgtcagaaacacatgagtttgctagtgatta
ttaatttcttgtagctgaatttgacatgtttgactggtccagaagaataa
acaggatatgtaaagaaaaagacaaaacaaaattctctttgtataccaga
caagtcctgttaggaaactgtacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_12867886_12868923
seq2: B6Ng01-146K18.b_45_1086

seq1  GAATTCCAGTCCAGTGTTTACCTGGCTTTCCAGCTAAGCAATCTCCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCAGTGTTTACCTGGCTTTCCAGCTAAGCAATCTCCTTTT  50

seq1  AGATCTAGAGTTTTGATGTTGCTTCTATGCACAGGCACTGGAATTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTAGAGTTTTGATGTTGCTTCTATGCACAGGCACTGGAATTCCTTT  100

seq1  TGTGTCCTTTAGCTCAGGTGATTTCTATCTTATCTCTGGTCTCAGGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTTTAGCTCAGGTGATTTCTATCTTATCTCTGGTCTCAGGTTTC  150

seq1  ATGAATGCATCTTATCATACTCATAGTTTACAATAGAGTTAAAAGGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGCATCTTATCATACTCATAGTTTACAATAGAGTTAAAAGGTATA  200

seq1  TGCAACAAATATATAAAATATGTGCTAATACTTTTTTATAAAATTAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAAATATATAAAATATGTGCTAATACTTTTTTATAAAATTAAAAA  250

seq1  CATTAGGAATATCCTTCTGATTTCAGAAGAAACAAGTATAAGGATAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGAATATCCTTCTGATTTCAGAAGAAACAAGTATAAGGATAATTT  300

seq1  CACATAGAAAAGATGTATTTGAGTAAACACAATTACAAAGAAATGCACGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGAAAAGATGTATTTGAGTAAACACAATTACAAAGAAATGCACGA  350

seq1  AGATGAGCTTGCATAATTATCTCTACCATGAAGAAATTATCCTCCATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGCTTGCATAATTATCTCTACCATGAAGAAATTATCCTCCATGAC  400

seq1  AATTCTGCTTGCATTGAATTGATTACATTTGTGTTTCATGGTCCTGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGCTTGCATTGAATTGATTACATTTGTGTTTCATGGTCCTGACAA  450

seq1  CATGTACAAGATATTTTAGATGAAGAAGTAGTTTTGATCAAACTGTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACAAGATATTTTAGATGAAGAAGTAGTTTTGATCAAACTGTGTCA  500

seq1  CTGCATGTTTTAATACTTCAAAATATGAGTTCCATCTGAAGTTGTTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTTTTAATACTTCAAAATATGAGTTCCATCTGAAGTTGTTGGTG  550

seq1  TTTCAAACATTTATGATGTCCTAGATTTTTTGAAGCTTGAGTGTGTAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACATTTATGATGTCCTAGATTTTTTGAAGCTTGAGTGTGTAATC  600

seq1  AAGACATAAATAAACTTTTTGTGATTTTCCTTAATGTTGGTGGATGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATAAATAAACTTTTTGTGATTTTCCTTAATGTTGGTGGATGAATT  650

seq1  AAATTTATTTCTACTGTTTTCATCTGCTCTTGTCTTTAATATTGGTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATTTCTACTGTTTTCATCTGCTCTTGTCTTTAATATTGGTTTAT  700

seq1  ATATTTTGTTGTTTTGCTTTTTCCCCAACACACTTGATTTATGGTTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGTTGTTTTGCTTTTTCCCCAACACACTTGATTTATGGTTAATG  750

seq1  AGCACTTATATATGGATGTGTAGTGGTCAGAAAACACC-TTCATTCACAA  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGCACTTATATATGGATGTGTAGTGGTCAGAAAACACCTTTCATTCACAA  800

seq1  GGGAAGAGTGACATATTCC-TTCCTAAGTGAA-TCTTATCTCA-TTGCAC  846
      ||||||||||||||||||| |||||||||||| |||||||||| ||||||
seq2  GGGAAGAGTGACATATTCCTTTCCTAAGTGAATTCTTATCTCATTTGCAC  850

seq1  TCTG-TATC-AAATTGC-AAAAATCCTGCAGATAGATTCAATGTTTTCTC  893
      |||| |||| ||||||| ||||||||||||||||||||||||||||||||
seq2  TCTGTTATCAAAATTGCAAAAAATCCTGCAGATAGATTCAATGTTTTCTC  900

seq1  CACCAGCAGTTTAATACTTGGG-TCTATGGTAAAGTCTTAATCAAATCGC  942
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  CACCAGCAGTTTAATACTTGGGTTCTATGGTAAAGTCTTAATCAAATTGC  950

seq1  TAGATTCCAAAAGTAAGTTTTCCTTCCCCCAGACTCCACTGCTTAATGGA  992
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  TAGATTCCAAAAGTAAGTTTTCCTT-CCCCAGACT-CACTGCTTAATGGA  998

seq1  GTTTCAGGCAATCTATTTTTTCTCTTCTTTTTTTATTTGTGAATCA  1038
      |||||| ||||||||||||||||| |||||||||||||| ||||||
seq2  GTTTCA-GCAATCTATTTTTTCTC-TCTTTTTTTATTTGGGAATCA  1042

seq1: chr3_13005989_13007025
seq2: B6Ng01-146K18.g_66_1090 (reverse)

seq1  TTGTACAGGTTTTCCCTTAACAGGACTTGTCTTGGTATACATAGAGAATT  50
      ||||||||  |||||  |||||||||||||| ||||||||| |||||| |
seq2  TTGTACAG--TTTCC--TAACAGGACTTGTC-TGGTATACAAAGAGAA-T  44

seq1  TTTGTTTTGTCTTTTTTCTGTTTCATTATCCTGTTTATTTCTTCTGGACC  100
      ||||||||||| ||||||| || || ||||||||||| ||||||||||||
seq2  TTTGTTTTGTC-TTTTTCT-TTACA-TATCCTGTTTA-TTCTTCTGGACC  90

seq1  AGTCAAAACAATGTCAAATTCAGCTACAGGAAATTAATAATCACTAGCAA  150
      |||||||   |||||||||||||||||| |||||||||||||||||||||
seq2  AGTCAAA--CATGTCAAATTCAGCTACAAGAAATTAATAATCACTAGCAA  138

seq1  ACTCATGTGTTTCTGACATTTTATTTTAATAAACAAACCTTACTTTTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGTGTTTCTGACATTTTATTTTAATAAACAAACCTTACTTTTTAC  188

seq1  TATATTCAGTAAGAATGACTGCTAAAAAATAGGTCATATCTTAGAAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCAGTAAGAATGACTGCTAAAAAATAGGTCATATCTTAGAAGCTG  238

seq1  AAGGCTGAGAGTATTAATATTTCATGGAGGGATATTCATTTCCTGAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGAGAGTATTAATATTTCATGGAGGGATATTCATTTCCTGAATGG  288

seq1  GAGATTAAAAAACAAAAACAGTAGCTTATAATCTATGCTGATGCACAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTAAAAAACAAAAACAGTAGCTTATAATCTATGCTGATGCACAGTT  338

seq1  CTGTGCAACAATAAAGAGAGTCATTAAACTGGATGCAATGTGTAAGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAACAATAAAGAGAGTCATTAAACTGGATGCAATGTGTAAGTTGA  388

seq1  TATACTCAATGACTTATCTTCATAATAAGCAATAATAAAAACCTCATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCAATGACTTATCTTCATAATAAGCAATAATAAAAACCTCATGCA  438

seq1  GATCCTCCTCAAAACCCAGTATCATCATTTGTATCTCTAGTGTCTCCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCCTCAAAACCCAGTATCATCATTTGTATCTCTAGTGTCTCCTCA  488

seq1  TAGGGCTAGACATTAATAACTGACCTTGAACTACTGAGCTCGCTATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTAGACATTAATAACTGACCTTGAACTACTGAGCTCGCTATTTTA  538

seq1  ATTTCCTCTTTTGCAAAATCCAGTAAATGTTAGACTTTAGGAACAAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCTTTTGCAAAATCCAGTAAATGTTAGACTTTAGGAACAAGAAT  588

seq1  AAATGTTATAAGCAACACTCAGAGAAATCCGATATCTGTACAGAAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTATAAGCAACACTCAGAGAAATCCGATATCTGTACAGAAATAAA  638

seq1  AGAAGTGAGAAAAAAATATGAGGAAACTAAGCAAGAAAAAAAGGCACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGAGAAAAAAATATGAGGAAACTAAGCAAGAAAAAAAGGCACACA  688

seq1  GAAAAGGAAGAAACATACACACAAAAGAAATATGATGATGATAATGAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAAGAAACATACACACAAAAGAAATATGATGATGATAATGAGTT  738

seq1  TGCAATTGCTCCTTGGTAAAACTAGACTATGAAATATAACTATATTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTGCTCCTTGGTAAAACTAGACTATGAAATATAACTATATTCTCC  788

seq1  TCATTAATTTTAAAATGTATGGAAAAACTAGCTTTAGATGCTTCAAAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAATTTTAAAATGTATGGAAAAACTAGCTTTAGATGCTTCAAAACT  838

seq1  ACAGTTTCCATAAAAAAATTCTACCTATTTATCTGGAACATCTGTTCAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCCATAAAAAAATTCTACCTATTTATCTGGAACATCTGTTCAAC  888

seq1  AATCTGTTCATTGTTCTGCACACCAAAGATGAAATTTCAACTGAAAGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTTCATTGTTCTGCACACCAAAGATGAAATTTCAACTGAAAGTAG  938

seq1  AAATAAAAACAAACATACAACATAAAGAAAAGTAGTTTCTGACAAGTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAACAAACATACAACATAAAGAAAAGTAGTTTCTGACAAGTATA  988

seq1  AATGTTATGAAAGAAGAAAAAGTTGAAAATAGAATTC  1037
      |||||||||||||||||||||||||||||||||||||
seq2  AATGTTATGAAAGAAGAAAAAGTTGAAAATAGAATTC  1025