BAC Information

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BAC

Clone NameB6Ng01-147E17
Chromosome3 (Build37)
Map Location 40,096,473 - 40,096,967
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147E17.bB6Ng01-147E17.g
ACCDH944215DH944216
length1,247966
definitionDH944215|Mus musculus domesticus DNA, BAC clone: B6Ng01-147E17, 5' end.DH944216|Mus musculus domesticus DNA, BAC clone: B6Ng01-147E17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaaagcaatctacatcaaacc
agtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaa
aatcagggactagacaaggctgcccactttctccctaccttttcaacata
gtacttgaagtattagccagagcaattcgacaacaaaaggagatcaaggg
gatacaaattggaaaggaggaagtcaaaatatcactttttgcagatgata
tgatagtatatataagtgaccctaaaaattccaccagagaactcctaaac
ttgataagcagcttcggtgaagtagctggatataaaattaactcaaacaa
gtcaatggcctttctctacacaaagaataaacaggctgagaaagaaatta
gggaaacaacacccttctcaatagtcacaaataatataaaatatcttggc
gtgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtc
tctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccat
gctcatggattagcaggatcaacattgtaaaaatggctatcttgccaaaa
gcaatctacagattcaatgcaatccccatcaaaattccaactcaattctt
caacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaac
ctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatc
accatgcctgacctaaagctttactacagagcaattgtggtaaaaactgc
atggtactggtatagagacagacaaggagaccaatggaatagaattgaag
acccagaaatgaacccacacacctatggtcacttgatcttcgacaaggga
gctaaaaccatccagtggaagaaagacagcattttcaacattggtgctgg
cacactggttgttatcatgtagagaatgcgaatcgatccatacttatctc
cttgtactagtcaaatctagtggatcaaagaactcacataaacagagaca
ctgaacttatgaggagaaagtgggggaaaagccttgagattgggtcacag
gaaattcctgacagaacagcatgccttggtcttagatcgagatgacaatg
gactaatgaaactccaaagtctcgcaaggcagaccggtcatagacaaagg
accccaacgtgggaggactttaccacccaaatcgcaaaagggacact
gaattctctatttagttcaataccccatttttttgattgggttgtttgtt
tctttggtgattaccttcttgagttctttatatattttggatattagtcc
tctatcagatatgagattagtgaagtttttttttttcctgatctgtaggt
tgtcagtttttctttttctttttttaatttcttttatttatttatttatt
tatttatttatttatttatttatttatttggtattttcctcatttacatt
tccaatgctaccccaaaagtcccccatacccccccactcccgtacctacc
cattcccactttttggccctggcattcccctgtactggggtatataaagt
ttgcaagtccaatgggcctctctttccagtgatgactgactaggccatct
tttgatacatatgcaggtaaagacaagagctccggggtactggttagttc
ataatgttgttccacctatagggttgtagatccctttagctccttgagta
ttttctctagctcctccattggggaccctgtgatccatccaatagctgac
tgtgagcatccacttatgtgtttgctaggccccggcgtagtctcactcga
gacagctatatcagggtcctatcagcacaatcttgctagtgtatgcaata
atgtcagcgtttggaggctgattatgggatggatccctggtgtactttta
aaacagtagataattggccttttctgatgtgcttctttccttatatctta
caatagtcactaaatttgattgttaacctcattgaatcgtttcgaaacac
gctcattttcgaactgccacattacaaattagtttttaaaaaattcatca
taacttccagtatcagaatagtttgggataaacccgtgaactcatttaaa
ttcagcaaaactaatagggagactgtacagaaaatccaaagtaattatga
tttaatctctaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40096473_40096967
seq2: B6Ng01-147E17.g_226_742 (reverse)

seq1  AATCAGCTTCCAAACGATGACACCATTGCATACACTAGCAAGATTTTGCT  50
      ||||||| |||||||| |||||  ||||||||||||||||||||| ||||
seq2  AATCAGCCTCCAAACGCTGACATTATTGCATACACTAGCAAGATTGTGCT  50

seq1  GAAAGGACCCTGATATAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGC  100
      || ||||||||||||||||||||||  ||||||||| |||||||||||||
seq2  GATAGGACCCTGATATAGCTGTCTCGAGTGAGACTACGCCGGGGCCTAGC  100

seq1  AAACACAGAAGTGGATGCTCACAGTCAGCTATTAGATGGATCACAGGACC  150
      ||||||| ||||||||||||||||||||||||| |||||||||||||  |
seq2  AAACACATAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGTC  150

seq1  CCCAATGGAGGAGCTAGAGGAAGTATCCAAGGAGCTAAAGAGATCTGCAA  200
      ||||||||||||||||||| || ||  ||||||||||||| ||||| |||
seq2  CCCAATGGAGGAGCTAGAGAAAATACTCAAGGAGCTAAAGGGATCTACAA  200

seq1  CCCTGGAGGTGCAACAACATTATGAACTAACCAATACCCCGGAGCTCTTG  250
      ||||  ||||| ||||||||||||||||||||| ||||||||||||||||
seq2  CCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTG  250

seq1  ACTTTAGCTGCATATGTATCAAAAGATGGCCTAGTAAGCCATCACTGGAA  300
       ||||| |||||||||||||||||||||||||||| || |||||||||||
seq2  TCTTTACCTGCATATGTATCAAAAGATGGCCTAGTCAGTCATCACTGGAA  300

seq1  AGAGAGGCCCATTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAAC  350
      ||||||||||||||||| |||||||||||||| |||||||||||||||| 
seq2  AGAGAGGCCCATTGGACTTGCAAACTTTATATACCCCAGTACAGGGGAAT  350

seq1  GCCAGGGCCAAAAAGTGGGAATGGGTGGATAGGGGAGTGGGGAGAGGGTA  400
      |||||||||||||||||||||||||| | || ||||||||||   |||||
seq2  GCCAGGGCCAAAAAGTGGGAATGGGTAGGTACGGGAGTGGGG---GGGTA  397

seq1  TTTGGGACTTTTGGGATAGCATTGGAAATGTAATTGAGGAAAATACGTAA  450
      |  |||||||||||| ||||||||||||||||| ||||||||||||  ||
seq2  TGGGGGACTTTTGGGGTAGCATTGGAAATGTAAATGAGGAAAATACCAAA  447

seq1  TAAA-------------------------AAATATATTTAAAAAAGAATA  475
      ||||                         ||||| ||  | |||||||  
seq2  TAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAGAAAT  497

seq1  TAAAAAAAGAAAAAGAAAAA  495
      ||||||||||||||||||||
seq2  TAAAAAAAGAAAAAGAAAAA  517