BAC Information

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BAC

Clone NameB6Ng01-147I05
Chromosome3 (Build37)15 (Build37)
Map Location 41,059,066 - 41,059,73714,433,631 - 14,434,256
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147I05.bB6Ng01-147I05.g
ACCDH944373DH944374
length9571,075
definitionDH944373|Mus musculus domesticus DNA, BAC clone: B6Ng01-147I05, 5' end.DH944374|Mus musculus domesticus DNA, BAC clone: B6Ng01-147I05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,066 - 41,059,737)(14,433,631 - 14,434,256)
sequence
gaattctttgtttatctctgagccccatcttttaagggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccaatttaagataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgatggtgtcttttgccttgcagaagctttgcagtttca
tgaggtcccatttgtcaatccttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcgaggcttttccccac
tttctcctcaataagtttcagtgtctctgtttttatgtggatgtccttga
tccacttagatttgaccttattacaaggagataggaatggatcaatttgc
attcttttacatgataactgccagttgtgccagcactatttgttgaagat
gctgtcttttttccactggatggtttttgcttccttgtcaaagttcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtagctataccagtaccatgcagttttttatcacaattg
ctctgtagtatagctttaggtcaggcatggtgattccaccagaggttctt
ttatccttgagaagagtttttgctaggcattttaaacaaattttgtatta
acacttttttttctctagagaaaatactcaccaaacaaaattgctgtgct
atttaaaagtgttttcattttaatattcacacaaaaaaatcttgtcatat
cactatccccaaaataattttgttttttatgagtgaacagatttgtgtag
agtatgaacccagatgctgtgaaatagtaagtgtgattgctgatactcac
tatgtcttccccacttgactgtattttctacagtctttttatgagtatat
tttctat
gaattccaaataaaaccagagacactgaaacatatagaggagaaagtgga
gaagagcctcgaatatatgggtacaaaggaaagattcctgaacagaacat
cattggctagtgctgtaagatcaagaattgacaagtgggacctcataaaa
ttacaaagttcttgtaaggtataggacactgtcaataagacctaaaggaa
accaacagattgggactagatctttatgaatactaaatccaatagggagc
taatatcaaatatatatatatgggtacagagctgaacaaataattcttaa
gtgaggagtaccaaatggctgagaagcacctaaaaattattcaatatcat
taatcatcaaggaaatgcaaaacaaccctgagattccagttcacaccaga
tagaatggctaagatcaaaaatcagatgacagcagatgctggagaggatg
tggagaaagaggaacagtcctccattgctggtgcgactgcaagctggtac
aaccactttggaaatcagtttggcagttcctcagaaaattggacatagtt
ctgctggaagatccagcaataccactcctgggcatatacccagaggatgc
tgcaatatgtaataagggcacatgctccactatgttcatagcagccttat
ttataatagccagaagctggaaagaatccagatgtccctcaacagacaaa
tggatacagaaaatgtgatacatttataaaatggagtactatgcagctat
taaaaacaatgaatttattaaattcttagacaaatggatagatctggagg
gatatcatcctaagtgaagtaatccaatcacaaaagaacacacatgatat
gcactcactgataagtggatattagctcagaagctcagaatccttagaag
gagaacagaatacccatggaaggagttacaaagacaaagttcgcaggaga
aattgcatctaccctttttcattctctcactgccctgagtcaggttcagg
accagggatcctggtgacatactgatctatgtgtaatctcctgataacaa
agctccagaaaattttcctttccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059066_41059737
seq2: B6Ng01-147I05.b_51_724 (reverse)

seq1  TAGCAAAAACTCTTCTCAAGGATAACAGAACCTCTGGTGGAATCACCATG  50
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATG  50

seq1  CCTGACCTAAAGCTTTACTACAGAGCAATTGTGAT-AAAAACTGCATGGT  99
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  CCTGACCTAAAGCTATACTACAGAGCAATTGTGATAAAAAACTGCATGGT  100

seq1  ACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCA  149
      ||||||||||  ||||||||| ||||||||||||||||||||||||| ||
seq2  ACTGGTATAGCTACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCA  150

seq1  GAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAA  199
      |||| ||| |||||||||||||||||||||| ||| ||||||| ||| ||
seq2  GAAATGAACCCACACACCTATGGTCACTTGAACTTTGACAAGGAAGCAAA  200

seq1  AACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACA  249
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  AACCATCCAGTGGAAAAAAGACAGCATCTTCAACAAATAGTGCTGGCACA  250

seq1  ACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCT  299
      |||||  ||||||||||| |||||||| |||||||||| |||||||||||
seq2  ACTGGCAGTTATCATGTAAAAGAATGCAAATTGATCCATTCCTATCTCCT  300

seq1  TGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGA  349
      |||| |||||||||||||||||||||||||||   |||||||||| ||||
seq2  TGTAATAAGGTCAAATCTAAGTGGATCAAGGACATCCACATAAAAACAGA  350

seq1  GACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGG  399
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  GACACTGAAACTTATTGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGG  400

seq1  TCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGA  449
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGA  450

seq1  TTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGC  499
      |  || || |||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGATTGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGC  500

seq1  AAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGA  548
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  AAAAGACACCATCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGA  550

seq1  TCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAA  598
      |||||||||||| |||||  ||||||||||||||||||||||||||| ||
seq2  TCTTTACCTATCTTAAATTGGATAGGGGACTAATATCCAATATATATAAA  600

seq1  GAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATG  648
      ||||||||||||||||| ||||||||||||||||||||| |||||| |||
seq2  GAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCCTTAAAAGATG  650

seq1  GGGCTCAGAGCTAAACAAAGAATT  672
      |||||||||| |||||||||||||
seq2  GGGCTCAGAGATAAACAAAGAATT  674

seq1: chr15_14433631_14434256
seq2: B6Ng01-147I05.g_525_1141

seq1  GAGGAACAGTCCTCCATTGCTGGTGCGACTGCAAGCTGGTACAACCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACAGTCCTCCATTGCTGGTGCGACTGCAAGCTGGTACAACCACTT  50

seq1  TGGAAATCAGTTTGGCAGTTCCTCAGAAAATTGGACATAGTTCTGCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCAGTTTGGCAGTTCCTCAGAAAATTGGACATAGTTCTGCTGGA  100

seq1  AGATCCAGCAATACCACTCCTGGGCATATACCCAGAGGATGCTGCAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGCAATACCACTCCTGGGCATATACCCAGAGGATGCTGCAATAT  150

seq1  GTAATAAGGGCACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAGGGCACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA  200

seq1  GCCAGAAGCTGGAAAGAATCCAGATGTCCCTCAACAGACAAATGGATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAGCTGGAAAGAATCCAGATGTCCCTCAACAGACAAATGGATACA  250

seq1  GAAAATGTGATACATTTATAAAATGGAGTACTATGCAGCTATTAAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTGATACATTTATAAAATGGAGTACTATGCAGCTATTAAAAACA  300

seq1  ATGAATTTATTAAATTCTTAGACAAATGGATAGATCTGGA-GGATATCAT  349
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGAATTTATTAAATTCTTAGACAAATGGATAGATCTGGAGGGATATCAT  350

seq1  CCTAAGTGAAGTAATCCAATCACAAAAGAACACACATGATATGCACTCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTGAAGTAATCCAATCACAAAAGAACACACATGATATGCACTCAC  400

seq1  TGATAAGTGGATATTAGCTCAGAAGCTCAGAATCCTTAGAAGGGAGAACA  449
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGATAAGTGGATATTAGCTCAGAAGCTCAGAATCCTTAGAA-GGAGAACA  449

seq1  GAATACCCATGGAAGGAGTTACAAAGACAAAGTTCGCAGGAGAAATTGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACCCATGGAAGGAGTTACAAAGACAAAGTTCGCAGGAGAAATTGCA  499

seq1  TCTACCCTTTTTTCATTCTCTCACTGCCCTGAGTCAGGTTTCCAGGACCA  549
      ||||||| ||||||||||||||||||||||||||||||||  ||||||||
seq2  TCTACCC-TTTTTCATTCTCTCACTGCCCTGAGTCAGGTT--CAGGACCA  546

seq1  GGGATCCTGGTTTGACATACTGATCTTATGTGTAATTCTCACTGATACAC  599
      ||||||||||  ||||||||||||| ||||||||| |||| |||||| ||
seq2  GGGATCCTGG--TGACATACTGATC-TATGTGTAA-TCTC-CTGATA-AC  590

seq1  AAAGCT-CAGAAATATTTTTCCTTCCAT  626
      |||||| |||||| ||||| | ||||||
seq2  AAAGCTCCAGAAA-ATTTTCCTTTCCAT  617