BAC Information

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BAC

Clone NameB6Ng01-147O09
Chromosome3 (Build37)
Map Location 124,937,637 - 125,067,988
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
Downstream geneNdst4, Ugt8a, Arsj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147O09.bB6Ng01-147O09.g
ACCDH944650DH944651
length1,155216
definitionDH944650|Mus musculus domesticus DNA, BAC clone: B6Ng01-147O09, 5' end.DH944651|Mus musculus domesticus DNA, BAC clone: B6Ng01-147O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,937,637 - 124,938,810)(125,067,775 - 125,067,988)
sequence
gaattcataatggccttacacttttaacaggaggtaaagtgcgctaatga
aatcataaaaatgaaggcagtatgcctttgaccaaaccagtctttatgct
tgcctgagaaccttagcttaggaaacaatcactttattcatctataggat
aaaatacttgcaaatttcaacgtaagaaatgggtggaacttaggggcata
attaggataattagtgtgtaactattttacattattgtattgttgtacat
tataagcacataatgaatttcagctacatgtaatagaattgtttgtaata
gagtcatgacaaacacttaaagtacaacattggttattaaaattaacata
ggttaattttagcagtaattttattaaaagttttaataaatgatctttta
tataaagtcattggaccccatgcttcaattaataatataacatcaaatat
actgtttaatatgcaatcatcattaaataaacatttgtattttagagcaa
aactataaaatgcgtgttctattgaaatggaattttaagtaaggaatttg
aattaaacatagcattttggtttctctggtatctgaagttggtaggttat
cataaatcctcaaacgaggaccagaaccaactatcataaatttattcagc
atgagctttctcctaggtatcataaattcagcatcttcaaaattcgggcc
gacgacacagactgttttttaacatggcctgagaaggattatcttacttt
ccttaaaatgaaacatcagaataattatcaagacccagacaatggctccc
taaaaaataatacaagaactagaccaaaataaaaaaaaaaaaaaaaagca
gggcccatgtatcagaaagttgtttgcatttcttaagtgggtggggagtg
tatttcatctaatttttcttaataatgaaattataacctttatgttcttt
gaaagataacacctgaagcaaatatctgatattaagatcctggagtgtac
tctgtcataactcatcaagagaaacattgcctaccctacacttctattca
aatattggcactctctcttccaaggaaaatttccatcttcacatgaaatt
gtgtaagcgagacatcatcatatattaaatactttgcctttatggagagt
aatgg
aacctcagaccttttcatgaggtatgtcattcacataagcacaatataca
tgcacctataatatttacatatgtagtaacatatatctaattatctcaaa
gaacttattcacatctggaattatactaaaatcatatatatatatatata
tatatatatatatatatatacacacatatatatatgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_124937637_124938810
seq2: B6Ng01-147O09.b_48_1202

seq1  GAATTCATAATGGCCTTACACTTTTAACAGGAGGTAAAGTGCGCTAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATGGCCTTACACTTTTAACAGGAGGTAAAGTGCGCTAATGA  50

seq1  AATCATAAAAATGAAGGCAGTATGCCTTTGACCAAACCAGTCTTTATGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAAAAATGAAGGCAGTATGCCTTTGACCAAACCAGTCTTTATGCT  100

seq1  TGCCTGAGAACCTTAGCTTAGGAAACAATCACTTTATTCATCTATAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAGAACCTTAGCTTAGGAAACAATCACTTTATTCATCTATAGGAT  150

seq1  AAAATACTTGCAAATTTCAACGTAAGAAATGGGTGGAACTTAGGGGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTGCAAATTTCAACGTAAGAAATGGGTGGAACTTAGGGGCATA  200

seq1  ATTAGGATAATTAGTGTGTAACTATTTTACATTATTGTATTGTTGTACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGATAATTAGTGTGTAACTATTTTACATTATTGTATTGTTGTACAT  250

seq1  TATAAGCACATAATGAATTTCAGCTACATGTAATAGAATTGTTTGTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCACATAATGAATTTCAGCTACATGTAATAGAATTGTTTGTAATA  300

seq1  GAGTCATGACAAACACTTAAAGTACAACATTGGTTATTAAAATTAACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATGACAAACACTTAAAGTACAACATTGGTTATTAAAATTAACATA  350

seq1  GGTTAATTTTAGCAGTAATTTTATTAAAAGTTTTAATAAATGATCTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATTTTAGCAGTAATTTTATTAAAAGTTTTAATAAATGATCTTTTA  400

seq1  TATAAAGTCATTGGACCCCATGCTTCAATTAATAATATAACATCAAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTCATTGGACCCCATGCTTCAATTAATAATATAACATCAAATAT  450

seq1  ACTGTTTAATATGCAATCATCATTAAATAAACATTTGTATTTTAGAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTAATATGCAATCATCATTAAATAAACATTTGTATTTTAGAGCAA  500

seq1  AACTATAAAATGCGTGTTCTATTGAAATGGAATTTTAAGTAAGGAATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAAAATGCGTGTTCTATTGAAATGGAATTTTAAGTAAGGAATTTG  550

seq1  AATTAAACATAGCATTTTGGTTTCTCTGGTATCTGAAGTTGGTAGGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACATAGCATTTTGGTTTCTCTGGTATCTGAAGTTGGTAGGTTAT  600

seq1  CATAAATCCTCAAACGAGGACCAGAACCAACTATCATAAATTTATTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATCCTCAAACGAGGACCAGAACCAACTATCATAAATTTATTCAGC  650

seq1  ATGAGCTTTCTCCTAGGTATCATAAATTCAGCATCTTCAAAATTCGGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTTTCTCCTAGGTATCATAAATTCAGCATCTTCAAAATTCGGGCC  700

seq1  GACGACACAGACTGTTTTTTAACATGGCCTGAGAAGGATTATCTTACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACACAGACTGTTTTTTAACATGGCCTGAGAAGGATTATCTTACTTT  750

seq1  CCTTAAAATGAAACATCAGAATAATTATCAAGACCCAGACAATGGCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAATGAAACATCAGAATAATTATCAAGACCCAGACAATGGCTCCC  800

seq1  TAAAAAATAATACAAGAACTAGACCAAAAAAAAAAAAAAAAAAAAAAAAA  850
      |||||||||||||||||||||||||     |||| |||||||||||||||
seq2  TAAAAAATAATACAAGAACTAGACC-----AAAATAAAAAAAAAAAAAAA  845

seq1  AAGCAGGGCCCATGTATCAGAAAGTTGTTTTGCATTTCTTTAAGTTGGTG  900
      ||||||||||||||||||||||||||| |||||||||| |||||| ||||
seq2  AAGCAGGGCCCATGTATCAGAAAGTTG-TTTGCATTTC-TTAAGTGGGTG  893

seq1  GGGAGTGTATTTCATCTATATTTTCTTAAATAATGAAATTATAACCTTTA  950
      ||||||||||||||||||  ||||||| ||||||||||||||||||||||
seq2  GGGAGTGTATTTCATCTAATTTTTCTT-AATAATGAAATTATAACCTTTA  942

seq1  TGTTCTTTGAAAGATAACACCTGAAGCAAATATCTGATAATTTAAGATCC  1000
      |||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  TGTTCTTTGAAAGATAACACCTGAAGCAAATATCTGATA--TTAAGATCC  990

seq1  T-GAGTGTACTCTGTCAATAAACTCATCAAGGAGAACAATGCCTACCCTA  1049
      | |||||||||||||||   |||||||||||   |||| |||||||||||
seq2  TGGAGTGTACTCTGTCA--TAACTCATCAAGAGAAACATTGCCTACCCTA  1038

seq1  CACTTCTTATTTCAAAATATT-GCACTCTCTCTTCCAAAGGAAACATTTC  1098
      |||||| ||||   ||||||| |||||||||||||| ||||||| |||||
seq2  CACTTC-TATT--CAAATATTGGCACTCTCTCTTCC-AAGGAAA-ATTTC  1083

seq1  TATCTTTCACATGAATTTGTTTAAGGCAGAACATCATCAATATATTATAA  1148
       ||| |||||||||| |||| ||||  || |||||||| |||||||| ||
seq2  CATC-TTCACATGAAATTGTGTAAGCGAG-ACATCATC-ATATATTA-AA  1129

seq1  TAAATTTGCC-TTATAGAGAGTAATGG  1174
      | | |||||| |||| |||||||||||
seq2  T-ACTTTGCCTTTATGGAGAGTAATGG  1155

seq1: chr3_125067775_125067988
seq2: B6Ng01-147O09.g_76_291 (reverse)

seq1  CACACACACACACACACACACACACACACACATATATATATGTGTG--TA  48
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  CACACACACACACACACACACACACACACACATATATATATGTGTGTATA  50

seq1  TATATATATATATATATATATATATATATATATGATTTTAGTATAATTCC  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATGATTTTAGTATAATTCC  100

seq1  AGATGTGAATAAGTTCTTTGAGATAATTAGATATATGTTACTACATATGT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGAATAAGTTCTTTGAGATAATTAGATATATGTTACTACATATGT  150

seq1  AAATATTATAGGTGCATGTATATTGTGCTTATGTGAATGACATACCTCAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTATAGGTGCATGTATATTGTGCTTATGTGAATGACATACCTCAT  200

seq1  GAAAAGGTCTGAGGTT  214
      ||||||||||||||||
seq2  GAAAAGGTCTGAGGTT  216