BAC Information

Click to search

BAC

Clone NameB6Ng01-147O16
Chromosome3 (Build37)19 (Build37)
Map Location 45,387,139 - 45,387,68615,125,231 - 15,125,644
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147O16.bB6Ng01-147O16.g
ACCDH944664DH944665
length1,036465
definitionDH944664|Mus musculus domesticus DNA, BAC clone: B6Ng01-147O16, 5' end.DH944665|Mus musculus domesticus DNA, BAC clone: B6Ng01-147O16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,387,139 - 45,387,686)(15,125,231 - 15,125,644)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaattctttcttcagggacttgaagtttttatcatac
agatctttcacttccttcgtagagtcacggcgagatatttatattatttg
tggctattgagaaggggttgttccctaattccttctcagcctgtttaatt
ctttgggtagagaaaaggccattgacttggtttgag
ttaggcaaatggatggaacagaaaacatcatcctgagtgaggtaacctat
tcacaaaagaacacacatgacgtgcactcactgataagtggatattagcc
cagaagctcagttatctttttagaaaggggaacaaaatacccgtggaagg
agttacagagacaaagtttggagcagagactgaaggaacaaccatccaga
gtttaccccacttgaggatccatcccataaacaaccaccaaatcctgaca
ctaggcagatgccaacaagagcctgctgatagtagtctaatatgctgtct
cctgttaggctctgccagtgcctggcaaatacagaagtggatgctcacag
tcatcctttggatggagcacaagttccccaatgaaggagctagagaaagt
acccagggagctgaaggggcctggagccccatatgaggaaaagggataag
atttgaaatgtaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45387139_45387686
seq2: B6Ng01-147O16.b_543_1087 (reverse)

seq1  CTCAAA-CAAGTCAATGGCC-TTTCTCTACACAAAGAA-TAAACAGGCTG  47
      |||||| ||||||||||||| ||||||||| ||||||| |||||||||||
seq2  CTCAAACCAAGTCAATGGCCTTTTCTCTACCCAAAGAATTAAACAGGCTG  50

seq1  AGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGCCACAAATAATATA  97
      || ||| |||||||| |||||| |||||||||||||||||||||||||| 
seq2  AG-AAGGAATTAGGG-AACAAC-CCCTTCTCAATAGCCACAAATAATAT-  96

seq1  AAATATCTCGGCGTGACTCTAACGAAGGAAGTGAAAGATCTGTATGATAA  147
      |||||||||| ||||||||| |||||||||||||||||||||||||||||
seq2  AAATATCTCGCCGTGACTCT-ACGAAGGAAGTGAAAGATCTGTATGATAA  145

seq1  AAACTTCAAGTCCCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGA  197
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAACTTCAAGTCCCTGAAGAAAG-AATTAAAGAAGATCTCAGAAGATGGA  194

seq1  AAGATCTCCCATGCTCATGGATTGGCAGGACCAACATTGTAAAAATGGCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCCCATGCTCATGGATTGGCAGGACCAACATTGTAAAAATGGCT  244

seq1  ATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATTAAAATTCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATTAAAATTCC  294

seq1  AACTCAATTCTTCAACGAACTAGAAGGAGCAATTTGCAAATTCATCTGGA  347
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGA  344

seq1  ATAACAAAAAACCGAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATAACAAAAAACCGAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACC  394

seq1  TCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGT  444

seq1  GATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTGGACCAATGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAACTGCATGGTACTGGTATAGAGACAGACAAGTGGACCAATGGA  494

seq1  ATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATC  544

seq1  T  548
      |
seq2  T  545

seq1: chr19_15125231_15125644
seq2: B6Ng01-147O16.g_388_542 (reverse)

seq1  ATTTACATTTCAAATGTTATCCCCTTTCCTGGTTTCCCCTCTGAAAACCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCCATCCCCTCCCCCTGATCACCAACCCACCCATTCCCATTTCCTGGCCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGACATTCTCCTATACTGGGGCATAGAACCTTCACAGGACCAAGGGCCTC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTCCCATTGATGACAGACTAGGCCATCCTCTGCTATATATGCAGCTAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGCCTTGAGTCCCACCATGTGTTTTCTTTGGTTGGTGGTTTAGTGCCAGG  250
                                                        
seq2  --------------------------------------------------  0

seq1  GAGCTAAAGGGGTACTGGTTAGTTCATATTGTTGTTCCTCCTATAGGGCT  300
                  |||   | |  || |||   | |||||| ||| |||||
seq2  ---------ATTTACATTTCAAATCTTATCCCTTTTCCTCATATGGGGCT  41

seq1  GCAAACCCCTTCAACTCCTTGGGTCCTTTCTCTAGCTCCTTCATTGGGGA  350
       ||  |||||||| |||| ||||| |||||||||||||||||||||||||
seq2  CCAGGCCCCTTCAGCTCCCTGGGTACTTTCTCTAGCTCCTTCATTGGGGA  91

seq1  CCCTGTGCTCCATCCAATGGATGGCTGTGAGCATCCACTTCTGTATTTGT  400
       | |||||||||||||| ||||| ||||||||||||||||||||||||| 
seq2  ACTTGTGCTCCATCCAAAGGATGACTGTGAGCATCCACTTCTGTATTTGC  141

seq1  CAGACACTGGCAGA  414
      ||| ||||||||||
seq2  CAGGCACTGGCAGA  155