BAC Information

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BAC

Clone NameB6Ng01-148D02
Chromosome3 (Build37)Y (Build37)
Map Location 87,463,925 - 87,465,1691,870,469 - 1,870,575
singlet/doubletsingletsinglet
Overlap geneArhgef11
Upstream geneLrba, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801
Downstream geneEG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148D02.bB6Ng01-148D02.g
ACCDH944870DH944871
length1,208458
definitionDH944870|Mus musculus domesticus DNA, BAC clone: B6Ng01-148D02, 5' end.DH944871|Mus musculus domesticus DNA, BAC clone: B6Ng01-148D02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,463,925 - 87,465,169)(1,870,469 - 1,870,575)
sequence
gaattcactcaagtgtttggtaaagggcacataatatatgctcagaatat
gccaactcttaccacacctcattaccatgagaaatgagaacttaagttgc
tgacttagtatagtatttccccacctattattatttaggaacatccctat
aaaaatgatagtgagggaggaactggcatgtaaatgcattctcgaggtaa
gggacagagtttggtctaacttttcagcatctgcctttcattcaaactgg
cttatctgctgccgatttgaatctttcaaaaacatctacaatttcagaat
atgtaactcttactcagttccaagggaaggcctatgtcccatgacgatat
tgatctttgtcccttctgaactttagggattcgtcctgctcccaaccaaa
aatgggtgctgggcaagctgttccaagtggaaaattcaactccatcccag
gcggaaaccccaaatctctgctgtcctagcagatttccaggacgtgctgg
ctcccagaaaccacaattacaggcaagctcaaagcagaggagtaattaga
ccataccatcagctcagcagttctccctcagggctgactccatttctctc
tcccaatcttctgtagcccaaaccccatctcaaccactgcacagtgaaga
gatgcacggaaatttccatttgtcttctcttccaacccctacccacttcc
aggaaactgaaggaaaaaaaaaaggcagggtgagaaaataaagagcccag
ctcacagatacagagataatgctggcggtgatagcagccacagacagtga
acactctcaggatccctcccttcgcctgtcccccaaagttagcttgggaa
aggagtctgctgaaggagtcctcttctaatgtgagaagggatcttgtgaa
ttagacatgtgaaattacaagagaaacctggaggctgggggactgctcag
tagttagagcacagctgcttcttgcaggaaatccatattttggtttcagg
cctacattgtgctcccaacttgctgtaactcagttcaggggatcatatca
tttttctggcttctaggtcatcttaccacatcggttaaaataatgaacat
atatctgaaaaagaaaagaaagaagagcacagctcatttcgtatgggaat
tgctgtacggaatgcaacgtgacttcttgaaggtcaagcatctcaggatt
ctatagtt
tcacctgaggaatactgaatggctgcgaagcacctgaaaaaatgttcaac
atccttaatcatcagagaaatacaaatcaaaacaatcctgagattccacc
tcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgc
tgtcgaggatgtggaaacagaggaacactccttcattgttggtgggattg
caagcttgtacaaccactctggaaatcagtctggcggttccttagaaaat
tggacatagtactactggaggatcccacaatacctctcctgggcatatat
ccagaagatgtcccaaccggtaagaaggacacatgctccactatgtaatg
ggccatcactggaacgagaggcccattggacacgcaaactgtatatgccc
cagtacaggggaacgccagggccaaaaaaatgggaatgggtgggtaggga
gtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_87463925_87465169
seq2: B6Ng01-148D02.b_45_1252 (reverse)

seq1  AACT-TAGAATCCT--GATGCCTTTGACCTTCAAGATGTCACGTTTGCCA  47
      |||| |||||||||  |||||  ||||||||||||| |||||| ||||  
seq2  AACTATAGAATCCTGAGATGC--TTGACCTTCAAGAAGTCACG-TTGC--  45

seq1  TCTTCCGTTTCCAAGACTATTCCCATTCTGGAGAGTTGGAGGCTGCTGCT  97
        ||||||    |   | |||||||| |    ||  ||   |||| ||| 
seq2  -ATTCCGT----ACAGCAATTCCCATAC----GAAATG--AGCTG-TGC-  82

seq1  TTCTTCTTTTCTTTTTTTCTTTTTTTCAGATATATTTTTATTATTTTTTA  147
       ||||| |||||||     | |||||||||||||| || |||| |||| |
seq2  -TCTTC-TTTCTTT-----TCTTTTTCAGATATATGTTCATTA-TTTTAA  124

seq1  TTTGTGTGTGTGTAAGGATGCCCCTAGAGGCCAG-AAAATGATATTGGAT  196
          ||||   |||| ||||  |||||| ||||| ||||||||||  |||
seq2  CCGATGTG---GTAA-GATG-ACCTAGAAGCCAGAAAAATGATAT--GAT  167

seq1  CCCCTGGAACTGGAGTTACAGGCAGTTGTGAGCCACCATGTAGGGCCTGG  246
      ||||| ||||| |||||||||  ||||| ||| ||| ||||| |||||| 
seq2  CCCCT-GAACT-GAGTTACAGCAAGTTGGGAG-CACAATGTA-GGCCTGA  213

seq1  AAACCAAATATGGGTTTCCTGCAAG-AGCAGCTGGTGCTCTTAACTACTG  295
      || | |||||||| ||||||||||| ||||||| |||||| |||||||||
seq2  AACCAAAATATGGATTTCCTGCAAGAAGCAGCT-GTGCTC-TAACTACTG  261

seq1  AGCAGTCCCCCAGCCTCCAGGTTTCTCTTTGTAATTTCACATGTCTAATT  345
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCAGTCCCCCAGCCTCCAGGTTTCTC-TTGTAATTTCACATGTCTAATT  310

seq1  CACAAGATCCCTTCTCACATTTAGAAGAGGACTCCTTCAGCAGACTCCTT  395
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CACAAGATCCCTTCTCACA-TTAGAAGAGGACTCCTTCAGCAGACTCCTT  359

seq1  TCCAAAGCTAACTTTGGGGGACAGGCGAAGGGAGGGATCCTGAGAGTGTT  445
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCCAAGCTAACTTTGGGGGACAGGCGAAGGGAGGGATCCTGAGAGTG-T  408

seq1  TCACTGTCTGTGGCTGCTATCACCGCCAGCATTATCTCTGTATCTGTGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCTGTGGCTGCTATCACCGCCAGCATTATCTCTGTATCTGTGAG  458

seq1  CTGGGCTCTTTATTTTCTCACCCTGCCTTTTTTTTTTCCTTCAGTTTCCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCTTTATTTTCTCACCCTGCCTTTTTTTTTTCCTTCAGTTTCCT  508

seq1  GGAAGTGGGTAGGGGTTGGAAGAGAAGACAAATGGAAATTTCCGTGCATC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGGGTAGGGGTTGGAAGAGAAGACAAATGGAAATTTCCGTGCATC  558

seq1  TCTTCACTGTGCAGTGGTTGAGATGGGGTTTGGGCTACAGAAGATTGGGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTGTGCAGTGGTTGAGATGGGGTTTGGGCTACAGAAGATTGGGA  608

seq1  GAGAGAAATGGAGTCAGCCCTGAGGGAGAACTGCTGAGCTGATGGTATGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAATGGAGTCAGCCCTGAGGGAGAACTGCTGAGCTGATGGTATGG  658

seq1  TCTAATTACTCCTCTGCTTTGAGCTTGCCTGTAATTGTGGTTTCTGGGAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTACTCCTCTGCTTTGAGCTTGCCTGTAATTGTGGTTTCTGGGAG  708

seq1  CCAGCACGTCCTGGAAATCTGCTAGGACAGCAGAGATTTGGGGTTTCCGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACGTCCTGGAAATCTGCTAGGACAGCAGAGATTTGGGGTTTCCGC  758

seq1  CTGGGATGGAGTTGAATTTTCCACTTGGAACAGCTTGCCCAGCACCCATT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGGAGTTGAATTTTCCACTTGGAACAGCTTGCCCAGCACCCATT  808

seq1  TTTGGTTGGGAGCAGGACGAATCCCTAAAGTTCAGAAGGGACAAAGATCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTGGGAGCAGGACGAATCCCTAAAGTTCAGAAGGGACAAAGATCA  858

seq1  ATATCGTCATGGGACATAGGCCTTCCCTTGGAACTGAGTAAGAGTTACAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGTCATGGGACATAGGCCTTCCCTTGGAACTGAGTAAGAGTTACAT  908

seq1  ATTCTGAAATTGTAGATGTTTTTGAAAGATTCAAATCGGCAGCAGATAAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAATTGTAGATGTTTTTGAAAGATTCAAATCGGCAGCAGATAAG  958

seq1  CCAGTTTGAATGAAAGGCAGATGCTGAAAAGTTAGACCAAACTCTGTCCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTGAATGAAAGGCAGATGCTGAAAAGTTAGACCAAACTCTGTCCC  1008

seq1  TTACCTCGAGAATGCATTTACATGCCAGTTCCTCCCTCACTATCATTTTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTCGAGAATGCATTTACATGCCAGTTCCTCCCTCACTATCATTTTT  1058

seq1  ATAGGGATGTTCCTAAATAATAATAGGTGGGGAAATACTATACTAAGTCA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGATGTTCCTAAATAATAATAGGTGGGGAAATACTATACTAAGTCA  1108

seq1  GCAACTTAAGTTCTCATTTCTCATGGTAATGAGGTGTGGTAAGAGTTGGC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTAAGTTCTCATTTCTCATGGTAATGAGGTGTGGTAAGAGTTGGC  1158

seq1  ATATTCTGAGCATATATTATGTGCCCTTTACCAAACACTTGAGTGAATTC  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTGAGCATATATTATGTGCCCTTTACCAAACACTTGAGTGAATTC  1208

seq1: chrY_1870469_1870575
seq2: B6Ng01-148D02.g_425_531

seq1  GGCCATCACTGGAAAGAGAGGCCCATTGGACATGCAAACTTTATATGCCC  50
      |||||||||||||| ||||||||||||||||| ||||||| |||||||||
seq2  GGCCATCACTGGAACGAGAGGCCCATTGGACACGCAAACTGTATATGCCC  50

seq1  CAGTACAGGGGAACGCCAGGGCC-AAAAAGGGGCAGTGGGTGGGTAGGGG  99
      ||||||||||||||||||||||| |||||  || | |||||||||| |||
seq2  CAGTACAGGGGAACGCCAGGGCCAAAAAAATGGGAATGGGTGGGTA-GGG  99

seq1  AGTGGGGG  107
      ||||||||
seq2  AGTGGGGG  107