BAC Information

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BAC

Clone NameB6Ng01-148G01
Chromosome3 (Build37)
Map Location 93,409,016 - 93,474,806
singlet/doubletdoublet
Overlap geneEG433623, Tdpoz2, Tdpoz1
Upstream geneLce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10
Downstream geneLOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148G01.bB6Ng01-148G01.g
ACCDH945008DH945009
length1,066978
definitionDH945008|Mus musculus domesticus DNA, BAC clone: B6Ng01-148G01, 5' end.DH945009|Mus musculus domesticus DNA, BAC clone: B6Ng01-148G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,409,016 - 93,410,075)(93,473,836 - 93,474,806)
sequence
gaattcattaattgccaacttgtgccagaaactaaactgtttagataaat
tactattcaaattgagcagaataatcaggagaaaccagtaatccttgacc
tgctatgcttatctggggaagcatagcctaacagtggaagaaaactaaga
agacatcaggtatggtggaggtagacaccatctatgttcatgagaaatgg
aacttcttcctgatgtataacaacactgctgttattaaactgtcagagcc
tgtaggactgagagaaatgatctaggtgagccgtctcacagaccacattt
gctatgtcactggcctggctgcttctagatcaatggttccattactgaag
tactgcaggacctgtagcccacggtaactaggctacatggtccagattgg
gccaatggctcatcagggacaggaaagaagtggtgtgcattgggggttat
gatatcatctgtgcctgtaaggaggcctgggcagcctactgaacttccag
atgaagttgggtcctggaaagggtgtggcatcctggactttggctctctc
aggggtgttaccaagaggccagttgtctttacagcatgtcactatacagt
gactacatcaatgagaaactataggttgtgaagactctgttccctggaaa
cctcaaaacccatcctgaaatatcaatagatgaagggatgaggagagaga
aacaacgttggtgtttaatacagtagccatactaatactgcccttagatg
ccacatcataaacccagaacttacaaatatgttagattatatgtcaaaag
agaattcaggatggaatgaagatttaatcagactattctatggcctacta
cagtcactacaagtccccaaaagaggaagaagatgggctgaggcacatag
aactctagcactgattggctttgaagatgaaggagaagcccaagcccaag
gactatatgttgactggtgtcttgaagctaccagggtaaagaaacaaaag
tcctatggtgacgtctatctgtcacagtagccctccaaaggacacggcaa
aagattggcctcacat
gaattcagggctcacaaggcaatcctagcagctcgctctccagttttcag
agccatgtttgaacatgaaatgaaggagagtctaaagacccccattaaga
ttcataacctgaatccccaagtcttcaaggagatgatgggtttcatctac
acggggaaggcaccacacctccacagccactccatggcctgtgatgtgct
gccagctgctgacaagtatggcctggtgagcctgaaggtcctgtgtgagg
atgccctttgcaggaacctctctgtgaagaatgctacacacactctcatc
ctggctgacctgcacagcacagagaagctgaagactcaggcccttgattt
cattgcctactatgcctctgaggtctgtgagacctcagagtggaagtcga
tattggagtcccatccccacttggtggctgaagcattccagtccctggct
tctgcacagtgttctttcttggagccgaaagtgatctcaggatctaacca
gctatgatttacatctttcttccaagagcaacaaacaacaacgtgtagtg
ttgtgaccaatgacttctggttagactatggtattgcggaagaatttaca
gtgaatctggggcaaggcatcatggtggatgaggatttaaatcacctgta
atatggttaaatagtgggtgtaggaagggcagcactgcagtctgggacct
tctacctgacatctacacttttgatattcttgtgtgttttttgtctaatg
tcttgcaaactgaataatttaggtgctggccctagggcatggggctaact
gagttttctttgaagaaacctatctgcagtgaactgagcagaacagataa
ctgggtcagaggaaaggagaaaatcaaacatgagtgttttctcatcagaa
gaaggaaatacagtggtaggagtttctttttaaagacttattttgttgga
actcagcttgtaaagcattactgctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93409016_93410075
seq2: B6Ng01-148G01.b_49_1114

seq1  GAATTCATTAATTGCCAACTTGTGCCAGAAACTAAACTGTTTAGATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATTGCCAACTTGTGCCAGAAACTAAACTGTTTAGATAAAT  50

seq1  TACTATTCAAATTGAGCAGAATAATCAGGAGAAACCAGTAATCCTTGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTCAAATTGAGCAGAATAATCAGGAGAAACCAGTAATCCTTGACC  100

seq1  TGCTATGCTTATCTGGGGAAGCATAGCCTAACAGTGGAAGAAAACTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGCTTATCTGGGGAAGCATAGCCTAACAGTGGAAGAAAACTAAGA  150

seq1  AGACATCAGGTATGGTGGAGGTAGACACCATCTATGTTCATGAGAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCAGGTATGGTGGAGGTAGACACCATCTATGTTCATGAGAAATGG  200

seq1  AACTTCTTCCTGATGTATAACAACACTGCTGTTATTAAACTGTCAGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTCCTGATGTATAACAACACTGCTGTTATTAAACTGTCAGAGCC  250

seq1  TGTAGGACTGAGAGAAATGATCTAGGTGAGCCGTCTCACAGACCACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGACTGAGAGAAATGATCTAGGTGAGCCGTCTCACAGACCACATTT  300

seq1  GCTATGTCACTGGCCTGGCTGCTTCTAGATCAATGGTTCCATTACTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTCACTGGCCTGGCTGCTTCTAGATCAATGGTTCCATTACTGAAG  350

seq1  TACTGCAGGACCTGTAGCCCACGGTAACTAGGCTACATGGTCCAGATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCAGGACCTGTAGCCCACGGTAACTAGGCTACATGGTCCAGATTGG  400

seq1  GCCAATGGCTCATCAGGGACAGGAAAGAAGTGGTGTGCATTGGGGGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGGCTCATCAGGGACAGGAAAGAAGTGGTGTGCATTGGGGGTTAT  450

seq1  GATATCATCTGTGCCTGTAAGGAGGCCTGGGCAGCCTACTGAACTTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCATCTGTGCCTGTAAGGAGGCCTGGGCAGCCTACTGAACTTCCAG  500

seq1  ATGAAGTTGGGTCCTGGAAAGGGTGTGGCATCCTGGACTTTGGCTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTGGGTCCTGGAAAGGGTGTGGCATCCTGGACTTTGGCTCTCTC  550

seq1  AGGGGTGTTACCAAGAGGCCAGTTGTCTTTACAGCATGTCACTATACAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGTTACCAAGAGGCCAGTTGTCTTTACAGCATGTCACTATACAGT  600

seq1  GACTACATCAATGAGAAACTATAGGTTGTGAAGACTCTGTTCCCTGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACATCAATGAGAAACTATAGGTTGTGAAGACTCTGTTCCCTGGAAA  650

seq1  CCTCAAAACCCATCCTGAAATATCAATAGATGAAGGGATGAGGAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAACCCATCCTGAAATATCAATAGATGAAGGGATGAGGAGAGAGA  700

seq1  AACAACGTTGGTGTTTAATACAGTAGCCATACTAATACTGCCCTTAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACGTTGGTGTTTAATACAGTAGCCATACTAATACTGCCCTTAGATG  750

seq1  CCACATCATAAACCCAGAACTTACAAATATGTTAGATTATATGTCAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCATAAACCCAGAACTTACAAATATGTTAGATTATATGTCAAAAG  800

seq1  AGAATTCAGGATGGAATGAAGA-TTAATCAGACTATTCTATGGCCTACTA  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGAATTCAGGATGGAATGAAGATTTAATCAGACTATTCTATGGCCTACTA  850

seq1  CAGTCACTAC-AGTCCCCAAAAGAGGAAGAAGAT-GGCTGAGGCACATAG  897
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  CAGTCACTACAAGTCCCCAAAAGAGGAAGAAGATGGGCTGAGGCACATAG  900

seq1  AACTCTAGCACTGA-TGGCTTTGAAGATGAAGGAGAAGCCAAAG-CCAAG  945
      |||||||||||||| ||||||||||||||||||||||||| ||| |||||
seq2  AACTCTAGCACTGATTGGCTTTGAAGATGAAGGAGAAGCCCAAGCCCAAG  950

seq1  GACTATATG-TGACTGGTGTCTTGAAGCTACAAGGGTAAAGAAACAAAAG  994
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  GACTATATGTTGACTGGTGTCTTGAAGCTACCAGGGTAAAGAAACAAAAG  1000

seq1  TCCAATGGTGACGCATATCTGTCACAGCAGCACTCCAAAGGACAAGGCAG  1044
      ||| |||||||||  |||||||||||| ||| |||||||||||| |||| 
seq2  TCCTATGGTGACGTCTATCTGTCACAGTAGCCCTCCAAAGGACACGGCAA  1050

seq1  AAGAATTGCCTCACAT  1060
      |||| | |||||||||
seq2  AAGATTGGCCTCACAT  1066

seq1: chr3_93473836_93474806
seq2: B6Ng01-148G01.g_67_1044 (reverse)

seq1  GAGAGCAGTAATTGCTTTTACAGCTGAGTTCCCACAAAATAAGTCTTTAA  50
      ||||||||||| ||||||   ||||||||||| |||||||||||||||||
seq2  GAGAGCAGTAA-TGCTTTACAAGCTGAGTTCCAACAAAATAAGTCTTTAA  49

seq1  AAAGAAACT-CTA-CACTGTTTTTCCTTC-TCTGATGAGAAAACACTCAT  97
      ||||||||| ||| |||||| |||||||| ||||||||||||||||||||
seq2  AAAGAAACTCCTACCACTGTATTTCCTTCTTCTGATGAGAAAACACTCAT  99

seq1  GTTTGA-TTTCTCCTTTCCTCTGA-CCAGTTATCTGTTCTGCTCAGTTCA  145
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTTGATTTTCTCCTTTCCTCTGACCCAGTTATCTGTTCTGCTCAGTTCA  149

seq1  CTGCAGATAGGTTTCTTCAAAG-AAACTCAGTTAG-CCCATG-CCTAGGG  192
      |||||||||||||||||||||| |||||||||||| |||||| |||||||
seq2  CTGCAGATAGGTTTCTTCAAAGAAAACTCAGTTAGCCCCATGCCCTAGGG  199

seq1  CCAGCACCTAAATTATTCAGTTTGCAAGACATTAGACAAAAAACACACAA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACCTAAATTATTCAGTTTGCAAGACATTAGACAAAAAACACACAA  249

seq1  GAATATCAAAAGTGTAGATGTCAGGTAGAAGGTCCCAGACTGCAGTGCTG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCAAAAGTGTAGATGTCAGGTAGAAGGTCCCAGACTGCAGTGCTG  299

seq1  CCCTTCCTACACCCACTATTTAACCATATTACAGGTGATTTAAATCCTCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTACACCCACTATTTAACCATATTACAGGTGATTTAAATCCTCA  349

seq1  TCCACCATGATGCCTTGCCCCAGATTCACTGTAAATTCTTCCGCAATACC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCATGATGCCTTGCCCCAGATTCACTGTAAATTCTTCCGCAATACC  399

seq1  ATAGTCTAACCAGAAGTCATTGGTCACAACACTAGACGTTGTTGTTTGTT  442
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATAGTCTAACCAGAAGTCATTGGTCACAACACTACACGTTGTTGTTTGTT  449

seq1  GCTCTTGGAAGAAAGATGTAAATCATAGCTGGTTAGATCCTGAGATCACT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGGAAGAAAGATGTAAATCATAGCTGGTTAGATCCTGAGATCACT  499

seq1  TTCGGCTCCAAGAAAGAACACTGTGCAGAAGCCAGGGACTGGAATGCTTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGCTCCAAGAAAGAACACTGTGCAGAAGCCAGGGACTGGAATGCTTC  549

seq1  AGCCACCAAGTGGGGATGGGACTCCAATATCGACTTCCACTCTGAGGTCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCAAGTGGGGATGGGACTCCAATATCGACTTCCACTCTGAGGTCT  599

seq1  CACAGACCTCAGAGGCATAGTAGGCAATGAAATCAAGGGCCTGAGTCTTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACCTCAGAGGCATAGTAGGCAATGAAATCAAGGGCCTGAGTCTTC  649

seq1  AGCTTCTCTGTGCTGTGCAGGTCAGCCAGGATGAGAGTGTGTGTAGCATT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCTGTGCTGTGCAGGTCAGCCAGGATGAGAGTGTGTGTAGCATT  699

seq1  CTTCACAGAGAGGTTCCTGCAAAGGGCATCCTCACACAGGACCTTCAGGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGAGAGGTTCCTGCAAAGGGCATCCTCACACAGGACCTTCAGGC  749

seq1  TCACCAGGCCATACTTGTCAGCAGCTGGCAGCACATCACAGGCCATGGAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGGCCATACTTGTCAGCAGCTGGCAGCACATCACAGGCCATGGAG  799

seq1  TGGCTGTGGAGGTGTGGTGCCTTCCCCGTGTAGATGAAACCCATCATCTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGGAGGTGTGGTGCCTTCCCCGTGTAGATGAAACCCATCATCTC  849

seq1  CTTGAAGACTTGGGGATTCAGGTTATGAATCTTAATGGGGGTCTTTAGAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGACTTGGGGATTCAGGTTATGAATCTTAATGGGGGTCTTTAGAC  899

seq1  TCTCCTTCATTTCATGTTCAAACATGGCTCTGAAAACTGGAGAGCGAGCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCATTTCATGTTCAAACATGGCTCTGAAAACTGGAGAGCGAGCT  949

seq1  GCTAGGATTGCCTTGTGAGCCCTGAATTC  971
      |||||||||||||||||||||||||||||
seq2  GCTAGGATTGCCTTGTGAGCCCTGAATTC  978