BAC Information

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BAC

Clone NameB6Ng01-148G10
Chromosome3 (Build37)
Map Location 144,180,892 - 144,353,459
singlet/doubletdoublet
Overlap geneHs2st1, Sep15, LOC435761, Sh3glb1
Upstream geneEG668889, EG621809, LOC100039938, LOC100039952, Lmo4, LOC545572
Downstream geneLOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148G10.bB6Ng01-148G10.g
ACCDH945024DH945025
length1,0241,038
definitionDH945024|Mus musculus domesticus DNA, BAC clone: B6Ng01-148G10, 5' end.DH945025|Mus musculus domesticus DNA, BAC clone: B6Ng01-148G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,180,892 - 144,181,904)(144,352,426 - 144,353,459)
sequence
gaattctgatacacactagaacatgaatgaaacctgcaaacggtgtgcca
gtgttaaggccatgtgttgcatggttggtttctccccacagagtacctgc
aaaccttaggtccacagagacacagaatataagtctgtaccaagagcggg
agcgtttggccaataggtagagagttcttgagtggcacaatgatacttgc
tgaggagacaagtggtaaaggttgccgggtcaaaggactcgatgtcacca
gtcaacagtaggtaatgcactgaacacagctctcaaacgatgaagtgcaa
atgaacaatacacatgagaaaaatgtcctagctagcagttaaatgcaaag
tagaactatgttgagattccatcttactctagtcagaatggccagtcacg
aaaaaaaaaaaaaaaagaaaaaaagaaaaagaaataacagctctggaaac
catgtggaaccaggggaacaaatcctcatatactcctagtagaaagagaa
cttaatccagccatacggaaatcagtatggatttacaaaagcaagcaagc
aaacaaacaaaatctaaaattagatctatcataggactcagctgtagcac
cttgggtatttacccaatggacttcaggtcagtaagtcacagaaagactt
acacagcagtcagtgtttactgctgacattcaccatagctaagttataga
accagcctaggaatagacataaacttaacaaagaaatggataaagaaagt
atgatgtacacacatatatacacagaaatttttattcagccagagagaac
aataaaaaatgttgtttgcaagagaatggatagaaatggggaatgacata
gtaagaatatcattcagtcagttctcagaaagacagatattggcatgctc
tctctcatattacgaattcctagacataataaaggatacagaaaattatg
ttatttacattctgacattaattgtagacgccaaactaggagaacaaagg
ggactggacggggggggggggggt
gaattctttggttaggtcttcatgtctcactcgttcatcatccatccatt
caaaagacatttattgagggccaggtactttgttgatcaactaagtacac
ctctaacaggattgatattgtgatggaagaaataaaagtgttgtgtttag
gaattacctggtttgggtctgagaagtcagaagtagaatcccacgtagaa
ggaaagacttgttttgggcctagaaccaacagaacataaaattgtccaga
gtaccttagtagcggagtacaaaggtgtagttcacttactcacagagtct
tgtaaacttttgagccctaaagtactatttaaatagcactttaaagcatc
catttgtgttaagagcttggtaaacatggaaaacttggttcttggtctca
gcattaaaaacccctttctctgcagtcagataaattcctctgcagttttc
tagttctgtaagactctgacttacacttgagttacatacttgagggactc
cagagacaactgagatgctagtgttctagggaatcaagtgaatgaggttt
gttgttctttttcttcctcagaaaggaagttttatagcctaaagcgccat
ctgttatatttgtccaaaattaggttttgagggactatagaaatttgggt
gactttaaacagcagcttcagttcagcaaattcagtttatgggaaataga
tcagtgcaggagaaaatataaatatggactgaattggttctggtttgtat
cctcacatattgggctccctggagttcaactcagatttagagctgccatt
ttttatcagtataatgggaataagcattgttacctagcaggagattattc
cacaagtattacttttgtggtttgtgcttttaggcaaagaccttggcata
atagtacattatgctgtaagcccagatgtccttttcagtccctgaacaca
tgggcagtgaggaacatgtctgactctgtgctgtgcttgccccttcagcc
cattctccaacctcccggaaacccgagcagagcttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144180892_144181904
seq2: B6Ng01-148G10.b_45_1067

seq1  GAATTCTGATACACACTAGAACATGAATGAAACCTGCAAACGGTGTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATACACACTAGAACATGAATGAAACCTGCAAACGGTGTGCCA  50

seq1  GTGTTAAGGCCATGTGTTGCATGGTTGGTTTCTCCCCACAGAGTACCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAGGCCATGTGTTGCATGGTTGGTTTCTCCCCACAGAGTACCTGC  100

seq1  AAACCTTAGGTCCACAGAGACACAGAATATAAGTCTGTACCAAGAGCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTAGGTCCACAGAGACACAGAATATAAGTCTGTACCAAGAGCGGG  150

seq1  AGCGTTTGGCCAATAGGTAGAGAGTTCTTGAGTGGCACAATGATACTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTTGGCCAATAGGTAGAGAGTTCTTGAGTGGCACAATGATACTTGC  200

seq1  TGAGGAGACAAGTGGTAAAGGTTGCCGGGTCAAAGGACTCGATGTCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGACAAGTGGTAAAGGTTGCCGGGTCAAAGGACTCGATGTCACCA  250

seq1  GTCAACAGTAGGTAATGCACTGAACACAGCTCTCAAACGATGAAGTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACAGTAGGTAATGCACTGAACACAGCTCTCAAACGATGAAGTGCAA  300

seq1  ATGAACAATACACATGAGAAAAATGTCCTAGCTAGCAGTTAAATGCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAATACACATGAGAAAAATGTCCTAGCTAGCAGTTAAATGCAAAG  350

seq1  TAGAACTATGTTGAGATTCCATCTTACTCTAGTCAGAATGGCCAGTCACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTATGTTGAGATTCCATCTTACTCTAGTCAGAATGGCCAGTCACG  400

seq1  AAAAAAAAAAAAAAAAGAAAAAAAGAAAAAGAAATAACAGCTCTGGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAGAAAAAAAGAAAAAGAAATAACAGCTCTGGAAAC  450

seq1  CATGTGGAACCAGGGGAACAAATCCTCATATACTCCTAGTAGAAAGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGAACCAGGGGAACAAATCCTCATATACTCCTAGTAGAAAGAGAA  500

seq1  CTTAATCCAGCCATACGGAAATCAGTATGGATTTACAAAAGCAAGCAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCCAGCCATACGGAAATCAGTATGGATTTACAAAAGCAAGCAAGC  550

seq1  AAACAAACAAAATCTAAAATTAGATCTATCATAGGACTCAGCTGTAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAAATCTAAAATTAGATCTATCATAGGACTCAGCTGTAGCAC  600

seq1  CTTGGGTATTTACCCAATGGACTTCAGGTCAGTAAGTCACAGAAAGACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTATTTACCCAATGGACTTCAGGTCAGTAAGTCACAGAAAGACTT  650

seq1  ACACAGCAGTCAGTGTTTACTGCTGACATTCACCATAGCTAAGTTATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCAGTCAGTGTTTACTGCTGACATTCACCATAGCTAAGTTATAGA  700

seq1  ACCAGCCTAGGAATAGACATAAACTTAACAAAGAAATGGATAAAGAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCTAGGAATAGACATAAACTTAACAAAGAAATGGATAAAGAAAGT  750

seq1  ATGATGTACACACATATATACACAGAAA-TTTTATTCAGCCAGAGAGAAC  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATGATGTACACACATATATACACAGAAATTTTTATTCAGCCAGAGAGAAC  800

seq1  AATAAAAAATGTTGTTTGCAAGAGAATGGATAGAAATGGGGAATGACATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAATGTTGTTTGCAAGAGAATGGATAGAAATGGGGAATGACATA  850

seq1  GTAAGAATATCA-TCAGTCAG-TCTCAGAAAGACAGATATT-GCATGCTC  896
      |||||||||||| |||||||| ||||||||||||||||||| ||||||||
seq2  GTAAGAATATCATTCAGTCAGTTCTCAGAAAGACAGATATTGGCATGCTC  900

seq1  TCTCTCATA-TACGAA-TCCTAGACATAATAAA-GATACAGAAAATTATG  943
      ||||||||| |||||| |||||||||||||||| ||||||||||||||||
seq2  TCTCTCATATTACGAATTCCTAGACATAATAAAGGATACAGAAAATTATG  950

seq1  -TATGTACA-TCTGACA-TAAATGTAGACGCCAAACTAGGAGAACAAAGG  990
       ||| |||| ||||||| ||| ||||||||||||||||||||||||||||
seq2  TTATTTACATTCTGACATTAATTGTAGACGCCAAACTAGGAGAACAAAGG  1000

seq1  GGACTGGACGGGGGGGGGGGGGG  1013
      |||||||||||||||||||||||
seq2  GGACTGGACGGGGGGGGGGGGGG  1023

seq1: chr3_144352426_144353459
seq2: B6Ng01-148G10.g_68_1105 (reverse)

seq1  AGGAGGCTCTGCTCGGGTTTCCGGGAGG-TGGAGAATGGGCTGAAGGGGG  49
      |||| ||||||||||||||||||||||| |||||||||||||||| ||||
seq2  AGGAAGCTCTGCTCGGGTTTCCGGGAGGTTGGAGAATGGGCTGAA-GGGG  49

seq1  CAAGCACAGCACAGAGGTCAGACATGTTCCTCACTGCCCATGTG-TCAGG  98
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  CAAGCACAGCACAGA-GTCAGACATGTTCCTCACTGCCCATGTGTTCAGG  98

seq1  GACTGAAAAGGACATCTGGGCTTACAGCAT-ATGTACTA-TATGCC-AGG  145
      |||||||||||||||||||||||||||||| |||||||| |||||| |||
seq2  GACTGAAAAGGACATCTGGGCTTACAGCATAATGTACTATTATGCCAAGG  148

seq1  TCTTTGCCTAAAAGCACAAAACAC-AAAGTAATACTTGTGGAATAGTCTC  194
      |||||||||||||||||||| ||| |||||||||||||||||||| ||||
seq2  TCTTTGCCTAAAAGCACAAACCACAAAAGTAATACTTGTGGAATAATCTC  198

seq1  CTGCTAGGTAACAATGCTTATTCCCATTATACTGATAAAAAATGGCAGCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGGTAACAATGCTTATTCCCATTATACTGATAAAAAATGGCAGCT  248

seq1  CTAAATCTGAGTTGAACTCCAGGGAGCCCAATATGTGAGGATACAAACCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTGAGTTGAACTCCAGGGAGCCCAATATGTGAGGATACAAACCA  298

seq1  GAACCAATTCAGTCCATATTTATATTTTCTCCTGCACTGATCTATTTCCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAATTCAGTCCATATTTATATTTTCTCCTGCACTGATCTATTTCCC  348

seq1  ATAAACTGAATTTGCTGAACTGAAGCTGCTGTTTAAAGTCACCCAAATTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTGAATTTGCTGAACTGAAGCTGCTGTTTAAAGTCACCCAAATTT  398

seq1  CTATAGTCCCTCAAAACCTAATTTTGGACAAATATAACAGATGGCGCTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTCCCTCAAAACCTAATTTTGGACAAATATAACAGATGGCGCTTT  448

seq1  AGGCTATAAAACTTCCTTTCTGAGGAAGAAAAAGAACAACAAACCTCATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATAAAACTTCCTTTCTGAGGAAGAAAAAGAACAACAAACCTCATT  498

seq1  CACTTGATTCCCTAGAACACTAGCATCTCAGTTGTCTCTGGAGTCCCTCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGATTCCCTAGAACACTAGCATCTCAGTTGTCTCTGGAGTCCCTCA  548

seq1  AGTATGTAACTCAAGTGTAAGTCAGAGTCTTACAGAACTAGAAAACTGCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTAACTCAAGTGTAAGTCAGAGTCTTACAGAACTAGAAAACTGCA  598

seq1  GAGGAATTTATCTGACTGCAGAGAAAGGGGTTTTTAATGCTGAGACCAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTTATCTGACTGCAGAGAAAGGGGTTTTTAATGCTGAGACCAAG  648

seq1  AACCAAGTTTTCCATGTTTACCAAGCTCTTAACACAAATGGATGCTTTAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGTTTTCCATGTTTACCAAGCTCTTAACACAAATGGATGCTTTAA  698

seq1  AGTGCTATTTAAATAGTACTTTAGGGCTCAAAAGTTTACAAGACTCTGTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTATTTAAATAGTACTTTAGGGCTCAAAAGTTTACAAGACTCTGTG  748

seq1  AGTAAGTGAACTACACCTTTGTACTCCGCTACTAAGGTACTCTGGACAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTGAACTACACCTTTGTACTCCGCTACTAAGGTACTCTGGACAAT  798

seq1  TTTATGTTCTGTTGGTTCTAGGCCCAAAACAAGTCTTTCCTTCTACGTGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTCTGTTGGTTCTAGGCCCAAAACAAGTCTTTCCTTCTACGTGG  848

seq1  GATTCTACTTCTGACTTCTCAGACCCAAACCAGGTAATTCCTAAACACAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTACTTCTGACTTCTCAGACCCAAACCAGGTAATTCCTAAACACAA  898

seq1  CACTTTTATTTCTTCCATCACAATATCAATCCTGTTAGAGGTGTACTTAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTATTTCTTCCATCACAATATCAATCCTGTTAGAGGTGTACTTAG  948

seq1  TTGATCAACAAAGTACCTGGCCCTCAATAAATGTCTTTTGAATGGATGGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAACAAAGTACCTGGCCCTCAATAAATGTCTTTTGAATGGATGGA  998

seq1  TGATGAACGAGTGAGACATGAAGACCTAACCAAAGAATTC  1034
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAACGAGTGAGACATGAAGACCTAACCAAAGAATTC  1038