BAC Information

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BAC

Clone NameB6Ng01-148L23
Chromosome3 (Build37)
Map Location 29,695,305 - 29,798,032
singlet/doubletdoublet
Overlap geneLOC100040676
Upstream geneEif5a2, Rpl22l1, Gm1527, 6130401L20Rik
Downstream geneEvi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1, Gpr160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148L23.bB6Ng01-148L23.g
ACCDH945269DH945270
length1,0931,119
definitionDH945269|Mus musculus domesticus DNA, BAC clone: B6Ng01-148L23, 5' end.DH945270|Mus musculus domesticus DNA, BAC clone: B6Ng01-148L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,695,305 - 29,696,398)(29,796,924 - 29,798,032)
sequence
gaattccacacttgtcttataggattaataggatcagatggtgttttaaa
tgtttgtgtcagaaggtatgaaagcataataaagatcctctgtctcatct
tcatttccaattggacttaaggtttaccccatgagacggaactcatgcct
aatactgctcaggtggtcatgagttgagactggataggtcaggggctcag
gggtaaataaaatactattgccctgctaatggagtatagcaagaagttga
ctcctaatgacattctgccttgctcattggttgctgccttattcagccat
catctgagaaggtgcatctgagatgctcgcagtagatgagaactaacaca
gactgacaactgtgcagagcgtgagagaatgtagagcacagcattctaaa
tgggttgtctccatcaacttcttcccctctttcctgcaaggctcagggat
ccatatacaagagattataagagctgaaggggatggatgactccaaggac
acagtgtccttcagacacaacagtacatatgaactcacacagactggcaa
aaaatagggcctgcacatctccaagcaagatgggatgccaagtgccagag
gggaacttgaacatgggctcttaccctagccaagaagcaaactgaaattg
agacacttttgaaaagaaaacaacagtgttatccaaaggagtctcactga
atatattaagcacacttcaggttagaccccccatggccagcagttgatgg
ccaacaaaaaacaattcagtactatttttgaagactccttgtctcatatc
tttttgagcattttgggtttttgtctgattttttagttgtatataacggg
tttcagattttatgggttttgggtgtgtgtgtgtatcttgtgaggttatt
ttatttatatacttatttatttaaaagtgattcaaacaatttttgtgtta
taccctggtgttcggtccagagatagttcaatgctgactcatgggaggag
caagagtagcatgtctaggtgaatgattagcttactttcttaagcctgaa
ggaaagaaaaggcaagtcatgtgttaattgggtgggggaagct
gaattctagaccgaggtgccagagtgcaatgctgggaactgaactgaggt
tcttcactgcccgagtgcatgctgggaactgaactgagattcttcactgc
ccgagtgcatgctgggaactgaactgagattcttcactgcccgagtgcaa
tgctgggaactgaactgagattcttcactgcccgagtgcatgctgggaac
tgaactgagattcttcactgcccgagtgcatgctgggaactgaactgagt
ttcttcactgcccgagtgcatgctgggaaccaaactggggtttcttcaca
acagtagagatctctgacctgtagttctctcacaaaactcagggaccttc
tcataattaatttaaaatgttgttttctttgaggattttatacactggac
atatgccttaactcactttgagagtcaattctcaacactatttcctctga
cttggatctatgagtatatgtaaattgcaaattaataaataataattaat
agtattccacttagaacttttaaagcatatcttctataattgtaatgttt
ttcttttttcttgtaattgtcaaagatattgttttctgttttatttttgg
tctggtttgttctttatttgcttgttttttaatttgatattactacaata
ctccaaggtatctttatgtagttgattcaaatcaagtctttcttaaagtt
atcattttaacccataccaaattgtgcccatggctgtgagttgcagttca
tgggaaaaagccatcatatgttcgacttagtacctagtgagctgtaggaa
ggtagtctgatcttgacgccattgagaatgttagggttctattctgacac
cccattcctccaggtcttgtctgcagaggacatacttctgatgacatttt
tagctactctcttcagatactgagaaactgtgacatgaagaagatgtacg
ttcaaatttctttcccttactgtccacatcctagcgctgcactattgctt
gaagtaaaattcaaggcctcctaagatagttgggctgtgatcactggcaa
caaagacagaaaacttgcccttcaaggtgggggtgcaaagtcaatataaa
tgggcccttcctctctgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_29695305_29696398
seq2: B6Ng01-148L23.b_47_1139

seq1  GAATTCCACACTTGTCTTATAGGATTAATAGGATCAGATGGTGTTTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACTTGTCTTATAGGATTAATAGGATCAGATGGTGTTTTAAA  50

seq1  TGTTTGTGTCAGAAGGTATGAAAGCATAATAAAGATCCTCTGTCTCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGTCAGAAGGTATGAAAGCATAATAAAGATCCTCTGTCTCATCT  100

seq1  TCATTTCCAATTGGACTTAAGGTTTACCCCATGAGACGGAACTCATGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCAATTGGACTTAAGGTTTACCCCATGAGACGGAACTCATGCCT  150

seq1  AATACTGCTCAGGTGGTCATGAGTTGAGACTGGATAGGTCAGGGGCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGCTCAGGTGGTCATGAGTTGAGACTGGATAGGTCAGGGGCTCAG  200

seq1  GGGTAAATAAAATACTATTGCCCTGCTAATGGAGTATAGCAAGAAGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAATAAAATACTATTGCCCTGCTAATGGAGTATAGCAAGAAGTTGA  250

seq1  CTCCTAATGACATTCTGCCTTGCTCATTGGTTGCTGCCTTATTCAGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAATGACATTCTGCCTTGCTCATTGGTTGCTGCCTTATTCAGCCAT  300

seq1  CATCTGAGAAGGTGCATCTGAGATGCTCGCAGTAGATGAGAACTAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAGAAGGTGCATCTGAGATGCTCGCAGTAGATGAGAACTAACACA  350

seq1  GACTGACAACTGTGCAGAGCGTGAGAGAATGTAGAGCACAGCATTCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGACAACTGTGCAGAGCGTGAGAGAATGTAGAGCACAGCATTCTAAA  400

seq1  TGGGTTGTCTCCATCAACTTCTTCCCCTCTTTCCTGCAAGGCTCAGGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGTCTCCATCAACTTCTTCCCCTCTTTCCTGCAAGGCTCAGGGAT  450

seq1  CCATATACAAGAGATTATAAGAGCTGAAGGGGATGGATGACTCCAAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATACAAGAGATTATAAGAGCTGAAGGGGATGGATGACTCCAAGGAC  500

seq1  ACAGTGTCCTTCAGACACAACAGTACATATGAACTCACACAGACTGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTCCTTCAGACACAACAGTACATATGAACTCACACAGACTGGCAA  550

seq1  AAAATAGGGCCTGCACATCTCCAAGCAAGATGGGATGCCAAGTGCCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGGCCTGCACATCTCCAAGCAAGATGGGATGCCAAGTGCCAGAG  600

seq1  GGGAACTTGAACATGGGCTCTTACCCTAGCCAAGAAGCAAACTGAAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTTGAACATGGGCTCTTACCCTAGCCAAGAAGCAAACTGAAATTG  650

seq1  AGACACTTTTGAAAAGAAAACAACAGTGTTATCCAAAGGAGTCTCACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTTTTGAAAAGAAAACAACAGTGTTATCCAAAGGAGTCTCACTGA  700

seq1  ATATATTAAGCACACTTCAGGTTAGACCCCCCATGGCCAGCAGTTGATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAAGCACACTTCAGGTTAGACCCCCCATGGCCAGCAGTTGATGG  750

seq1  CCAACAAAAAACAATTCAGTACTATTTTTGAAGACTCCTTGTCTCATATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAAAAACAATTCAGTACTATTTTTGAAGACTCCTTGTCTCATATC  800

seq1  TTTTTGAGCATTTT-GGTTTTTGTCTGATTTTTTAGTTGTATATAAC-GG  848
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  TTTTTGAGCATTTTGGGTTTTTGTCTGATTTTTTAGTTGTATATAACGGG  850

seq1  TTTCAGATTTTATGGGTTTTGGGTGTGTGTGTGTATCTTGTGAGGTTA-T  897
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTCAGATTTTATGGGTTTTGGGTGTGTGTGTGTATCTTGTGAGGTTATT  900

seq1  TTATTTATATACTTATTTATTTAAAAGTGATTCAAAACAATTTTTGTGTT  947
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTATTTATATACTTATTTATTTAAAAGTGATTC-AAACAATTTTTGTGTT  949

seq1  ATACCCTGGTGTTTGGTCCCAGAGATAGTTCCATGGCTGACTCATGGGAG  997
      ||||||||||||| ||| ||||||||||||| || |||||||||||||||
seq2  ATACCCTGGTGTTCGGT-CCAGAGATAGTTCAAT-GCTGACTCATGGGAG  997

seq1  GAAGCAAGAGTAGCAATGTCTAGGTGAATGATTAAGCTTAC-TTCTTAAG  1046
      | |||||||||||| |||||||||||||||||| ||||||| ||||||||
seq2  G-AGCAAGAGTAGC-ATGTCTAGGTGAATGATT-AGCTTACTTTCTTAAG  1044

seq1  GCATGAGGAAAG-AAAGCCAAGTCATGGAGTTAAATGGGT-GGGGAAGCT  1094
       |   ||||||| |||| |||||||| | ||||| ||||| |||||||||
seq2  CCTGAAGGAAAGAAAAGGCAAGTCAT-GTGTTAATTGGGTGGGGGAAGCT  1093

seq1: chr3_29796924_29798032
seq2: B6Ng01-148L23.g_69_1187 (reverse)

seq1  ATCAGA---GAAGG--CCATTTA-ATGGACTTTGCA--CCCACCTGGAAG  42
      ||||||   |||||  ||||||| || |||||||||  ||||||| ||||
seq2  ATCAGAGAGGAAGGGCCCATTTATATTGACTTTGCACCCCCACCTTGAAG  50

seq1  GGCAAAGTTTCTGTCTTTGTGCCCAGTTGATCACAGCCCACCTATCTTAG  92
      |||||  |||||||||||||  |||| ||||||||||||| |||||||||
seq2  GGCAAGTTTTCTGTCTTTGTTGCCAG-TGATCACAGCCCAACTATCTTAG  99

seq1  --AGCCTTGAATTTTACTTCAAGCAATAGTGCAGCGCTAGGATGT-GACA  139
         |||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGGCCTTGAATTTTACTTCAAGCAATAGTGCAGCGCTAGGATGTGGACA  149

seq1  GTAAGGGAAAGAAATTTGAACGTACATCTTCTTCATGTCACAGTTTCTCA  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGAAAGAAATTTGAACGTACATCTTCTTCATGTCACAGTTTCTCA  199

seq1  GTATCTGAAGAGAGTAGCTAAAAATGTCATCAGAAGTATGTCCTCTGCAG  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGAAGAGAGTAGCTAAAAATGTCATCAGAAGTATGTCCTCTGCAG  249

seq1  ACAAGACCTGGAGGAATGGGGTGTCAGAATAGAACCCTAACATTCTCAAT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACCTGGAGGAATGGGGTGTCAGAATAGAACCCTAACATTCTCAAT  299

seq1  GGCGTCAAGATCAGACTACCTTCCTACAGCTCACTAGGTACTAAGTCGAA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTCAAGATCAGACTACCTTCCTACAGCTCACTAGGTACTAAGTCGAA  349

seq1  CATATGATGGCTTTTTCCCATGAACTGCAACTCACAGCCATGGGCACAAT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGATGGCTTTTTCCCATGAACTGCAACTCACAGCCATGGGCACAAT  399

seq1  TTGGTATGGGTTAAAATGATAACTTTAAGAAAGACTTGATTTGAATCAAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATGGGTTAAAATGATAACTTTAAGAAAGACTTGATTTGAATCAAC  449

seq1  TACATAAAGATACCTTGGAGTATTGTAGTAATATCAAATTAAAAAACAAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAAGATACCTTGGAGTATTGTAGTAATATCAAATTAAAAAACAAG  499

seq1  CAAATAAAGAACAAACCAGACCAAAAATAAAACAGAAAACAATATCTTTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAGAACAAACCAGACCAAAAATAAAACAGAAAACAATATCTTTG  549

seq1  ACAATTACAAGAAAAAAGAAAAACATTACAATTATAGAAGATATGCTTTA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTACAAGAAAAAAGAAAAACATTACAATTATAGAAGATATGCTTTA  599

seq1  AAAGTTCTAAGTGGAATACTATTAATTATTATTTATTAATTTGCAATTTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCTAAGTGGAATACTATTAATTATTATTTATTAATTTGCAATTTA  649

seq1  CATATACTCATAGATCCAAGTCAGAGGAAATAGTGTTGAGAATTGACTCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTCATAGATCCAAGTCAGAGGAAATAGTGTTGAGAATTGACTCT  699

seq1  CAAAGTGAGTTAAGGCATATGTCCAGTGTATAAAATCCTCAAAGAAAACA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGAGTTAAGGCATATGTCCAGTGTATAAAATCCTCAAAGAAAACA  749

seq1  ACATTTTAAATTAATTATGAGAAGGTCCCTGAGTTTTGTGAGAGAACTAC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAAATTAATTATGAGAAGGTCCCTGAGTTTTGTGAGAGAACTAC  799

seq1  AGGTCAGAGATCTCTACTGTTGTGAAGAAACCCCAGTTTGGTTCCCAGCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGAGATCTCTACTGTTGTGAAGAAACCCCAGTTTGGTTCCCAGCA  849

seq1  TGCACTCGGGCAGTGAAGAAACTCAGTTCAGTTCCCAGCATGCACTCGGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCGGGCAGTGAAGAAACTCAGTTCAGTTCCCAGCATGCACTCGGG  899

seq1  CAGTGAAGAATCTCAGTTCAGTTCCCAGCATGCACTCGGGCAGTGAAGAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGAATCTCAGTTCAGTTCCCAGCATGCACTCGGGCAGTGAAGAA  949

seq1  TCTCAGTTCAGTTCCCAGCATTGCACTCGGGCAGTGAAGAATCTCAGTTC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTCAGTTCCCAGCATTGCACTCGGGCAGTGAAGAATCTCAGTTC  999

seq1  AGTTCCCAGCATGCACTCGGGCAGTGAAGAATCTCAGTTCAGTTCCCAGC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCAGCATGCACTCGGGCAGTGAAGAATCTCAGTTCAGTTCCCAGC  1049

seq1  ATGCACTCGGGCAGTGAAGAACCTCAGTTCAGTTCCCAGCATTGCACTCT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTCGGGCAGTGAAGAACCTCAGTTCAGTTCCCAGCATTGCACTCT  1099

seq1  GGCACCTCGGTCTAGAATTC  1109
      ||||||||||||||||||||
seq2  GGCACCTCGGTCTAGAATTC  1119